Wall clock time and date at job start Mon Mar 30 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99705 * 2 1 4 4 C 1.52996 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.81454 * 51.65967 * 4 3 2 6 6 C 1.54896 * 110.75116 * 288.32637 * 4 3 2 7 7 C 1.54266 * 104.19125 * 203.73968 * 6 4 3 8 8 H 1.09005 * 110.06880 * 142.91728 * 7 6 4 9 9 O 1.42898 * 110.03648 * 264.32431 * 7 6 4 10 10 C 1.53870 * 106.60088 * 23.61211 * 7 6 4 11 11 H 1.09000 * 110.03785 * 240.71033 * 10 7 6 12 12 N 1.46902 * 110.07425 * 119.30503 * 10 7 6 13 13 C 1.46905 * 111.00017 * 283.99095 * 12 10 7 14 14 C 1.50697 * 109.47251 * 163.83700 * 13 12 10 15 15 H 1.07998 * 119.99889 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00124 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99677 * 0.02562 * 16 14 13 18 18 Si 1.86789 * 120.00112 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47156 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47370 * 120.00206 * 18 16 14 21 21 H 1.48502 * 109.47403 * 240.00123 * 18 16 14 22 22 C 1.46901 * 111.00355 * 160.04011 * 12 10 7 23 23 C 1.52996 * 109.46900 * 289.20147 * 22 12 10 24 24 C 1.53007 * 109.46987 * 49.19509 * 22 12 10 25 25 C 1.54265 * 106.59949 * 359.97438 * 10 7 6 26 26 H 1.09004 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47152 * 300.00093 * 1 2 3 28 28 H 1.08998 * 109.47280 * 60.00545 * 1 2 3 29 29 H 1.08994 * 109.47554 * 59.99549 * 3 2 1 30 30 H 1.09000 * 109.46719 * 299.99683 * 3 2 1 31 31 H 1.08992 * 110.48696 * 322.42122 * 6 4 3 32 32 H 1.09000 * 110.48355 * 85.06762 * 6 4 3 33 33 H 0.96700 * 114.00322 * 297.17619 * 9 7 6 34 34 H 1.08999 * 109.47292 * 283.84278 * 13 12 10 35 35 H 1.09004 * 109.46615 * 43.83796 * 13 12 10 36 36 H 0.97005 * 120.00189 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.47316 * 169.19481 * 22 12 10 38 38 H 1.08998 * 109.47377 * 57.08878 * 23 22 12 39 39 H 1.09007 * 109.47091 * 177.08772 * 23 22 12 40 40 H 1.08997 * 109.46878 * 297.08545 * 23 22 12 41 41 H 1.09001 * 109.46787 * 60.00738 * 24 22 12 42 42 H 1.09001 * 109.47106 * 179.97438 * 24 22 12 43 43 H 1.08993 * 109.47434 * 300.00766 * 24 22 12 44 44 H 1.09003 * 110.48993 * 217.71370 * 25 10 7 45 45 H 1.08997 * 110.60430 * 95.12268 * 25 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8713 0.5243 -0.8000 6 6 4.0471 0.6872 1.3741 7 6 5.5053 1.1866 1.4381 8 1 5.7505 1.4956 2.4543 9 8 6.3959 0.1531 1.0129 10 6 5.6002 2.3899 0.4839 11 1 6.3256 2.1856 -0.3037 12 7 5.9922 3.5941 1.2283 13 6 4.8614 4.1277 1.9995 14 6 5.3723 5.0935 3.0373 15 1 6.4310 5.2915 3.1159 16 6 4.4880 5.7244 3.8865 17 7 3.1988 5.4829 3.7911 18 14 5.1213 6.9210 5.1734 19 1 6.6000 7.0167 5.0752 20 1 4.5226 8.2601 4.9415 21 1 4.7448 6.4381 6.5263 22 6 6.5426 4.6148 0.3265 23 6 7.9144 4.1629 -0.1783 24 6 5.5994 4.8065 -0.8629 25 6 4.1966 2.5794 -0.1274 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6885 1.8465 0.8899 30 1 1.6885 1.8463 -0.8900 31 1 3.4586 1.1236 2.1809 32 1 4.0142 -0.4012 1.4221 33 1 6.3822 -0.6338 1.5747 34 1 4.1756 4.6447 1.3283 35 1 4.3386 3.3078 2.4921 36 1 2.5766 5.9270 4.3882 37 1 6.6456 5.5573 0.8642 38 1 7.8197 3.1953 -0.6710 39 1 8.3000 4.8955 -0.8874 40 1 8.6009 4.0762 0.6639 41 1 4.6221 5.1284 -0.5033 42 1 6.0076 5.5641 -1.5319 43 1 5.4963 3.8640 -1.4005 44 1 4.2728 2.8721 -1.1746 45 1 3.6304 3.3218 0.4350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698786785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:27 Heat of formation + Delta-G solvation = -114.978673 kcal Electronic energy + Delta-G solvation = -22918.234707 eV Core-core repulsion = 19741.922221 eV Total energy + Delta-G solvation = -3176.312486 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16614 -38.86351 -37.81385 -35.59990 -34.87602 -32.43728 -30.37497 -29.35792 -28.44548 -27.53470 -26.93579 -25.04570 -24.10897 -21.83972 -21.14022 -19.75615 -18.48758 -18.09667 -17.50897 -17.17691 -16.86658 -16.38337 -16.13620 -15.53866 -15.35400 -15.24831 -14.94979 -14.44582 -14.12979 -13.93676 -13.52625 -13.23614 -13.17379 -13.07229 -12.95096 -12.73250 -12.57366 -12.47650 -12.38794 -12.11606 -12.00844 -11.84747 -11.77264 -11.53316 -11.29920 -11.15431 -11.04809 -10.79246 -10.56134 -10.54633 -8.84619 -8.15873 -6.23751 1.39340 1.41107 1.53570 2.41618 2.77788 3.10778 3.16347 3.42138 3.65966 3.90941 3.95038 4.14531 4.27439 4.35935 4.39670 4.44994 4.48369 4.51534 4.56142 4.59749 4.65359 4.70840 4.76404 4.80701 4.83223 4.85505 4.89937 4.99929 5.01883 5.05035 5.17504 5.24768 5.30325 5.34573 5.45812 5.49165 5.61327 5.73071 6.17199 6.19628 6.51082 6.76845 6.93078 6.97138 7.45035 8.93573 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.006586 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.479020 B = 4250.164678 C = 5247.651129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.073 3.927 4 C -0.077 4.077 5 H 0.092 0.908 6 C -0.136 4.136 7 C 0.113 3.887 8 H 0.043 0.957 9 O -0.571 6.571 10 C 0.091 3.909 11 H 0.092 0.908 12 N -0.532 5.532 13 C 0.214 3.786 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.959 3.041 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.074 3.926 23 C -0.128 4.128 24 C -0.178 4.178 25 C -0.151 4.151 26 H 0.103 0.897 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.390 0.610 34 H -0.019 1.019 35 H 0.004 0.996 36 H 0.262 0.738 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.034 0.966 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -8.809 -9.505 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C -0.003 4.003 4 C -0.096 4.096 5 H 0.110 0.890 6 C -0.174 4.174 7 C 0.054 3.946 8 H 0.061 0.939 9 O -0.379 6.379 10 C -0.018 4.018 11 H 0.110 0.890 12 N -0.256 5.256 13 C 0.088 3.912 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.785 3.215 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.034 4.034 23 C -0.186 4.186 24 C -0.236 4.236 25 C -0.190 4.190 26 H 0.121 0.879 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.240 0.760 34 H -0.002 1.002 35 H 0.022 0.978 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.236 -8.621 -9.543 12.863 hybrid contribution -1.168 0.919 1.039 1.813 sum -0.932 -7.702 -8.504 11.511 Atomic orbital electron populations 1.22930 0.79830 1.03908 1.00516 1.87817 1.21189 1.28171 1.95520 1.22499 0.93449 0.84383 0.99996 1.21949 0.92504 0.96994 0.98105 0.88998 1.22971 0.95906 1.01427 0.97084 1.22241 0.88065 0.87456 0.96846 0.93882 1.86411 1.64512 1.29350 1.57612 1.22124 0.95205 0.89830 0.94603 0.88971 1.62294 1.33322 1.05468 1.24472 1.19344 0.87759 0.93024 0.91097 1.21539 0.93468 1.24130 1.16545 0.92736 1.25756 0.94991 0.98812 0.99665 1.70069 1.02560 1.44651 1.39801 0.85485 0.78676 0.78586 0.78779 1.19144 1.20554 1.20664 1.21638 0.95022 0.94928 0.91823 1.21745 0.95086 1.01256 1.00505 1.22686 0.99518 1.02609 0.98790 1.23400 0.96978 0.96802 1.01786 0.87862 0.94269 0.93060 0.94688 0.92322 0.93035 0.89647 0.76043 1.00163 0.97762 0.92957 0.92127 0.92498 0.90866 0.93379 0.94641 0.91302 0.90773 0.89509 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -11.51 10.65 -148.98 -1.59 -13.09 16 3 C 0.07 2.16 5.37 71.98 0.39 2.54 16 4 C -0.08 -2.33 3.16 -9.51 -0.03 -2.36 16 5 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 6 C -0.14 -4.38 5.84 31.67 0.18 -4.19 16 7 C 0.11 3.94 3.36 31.32 0.11 4.05 16 8 H 0.04 1.75 7.66 -2.38 -0.02 1.74 16 9 O -0.57 -17.14 13.21 -148.98 -1.97 -19.11 16 10 C 0.09 3.29 2.09 45.64 0.10 3.38 16 11 H 0.09 3.16 5.71 -2.39 -0.01 3.15 16 12 N -0.53 -22.53 4.19 -846.19 -3.55 -26.07 16 13 C 0.21 10.92 3.12 85.55 0.27 11.19 16 14 C -0.52 -29.13 8.40 25.60 0.22 -28.91 16 15 H 0.05 3.08 7.64 -2.91 -0.02 3.06 16 16 C 0.01 0.32 5.46 84.66 0.46 0.78 16 17 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 18 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 22 C 0.07 2.79 2.78 44.92 0.12 2.92 16 23 C -0.13 -3.92 9.28 71.98 0.67 -3.25 16 24 C -0.18 -5.80 7.54 71.98 0.54 -5.26 16 25 C -0.15 -5.07 3.75 31.66 0.12 -4.95 16 26 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.03 1.16 7.99 -2.39 -0.02 1.14 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.90 7.84 -2.39 -0.02 1.88 16 32 H 0.08 2.40 8.06 -2.39 -0.02 2.39 16 33 H 0.39 8.17 9.11 -74.06 -0.67 7.49 16 34 H -0.02 -1.04 5.12 -2.39 -0.01 -1.05 16 35 H 0.00 0.24 6.98 -2.38 -0.02 0.22 16 36 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 37 H 0.06 2.61 7.08 -2.39 -0.02 2.60 16 38 H 0.06 1.65 6.41 -2.39 -0.02 1.63 16 39 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.03 1.32 6.26 -2.39 -0.01 1.30 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 43 H 0.07 2.17 4.75 -2.39 -0.01 2.16 16 44 H 0.09 2.56 5.96 -2.39 -0.01 2.54 16 45 H 0.06 2.56 4.84 -2.39 -0.01 2.55 16 Total: -1.00 -64.53 338.22 -0.10 -64.64 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.30 Total: 24.08 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 4.39 Total: -22.31 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -3.26 Total: -80.71 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -3.55 Total: -32.20 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -64.53 -0.10 -64.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698786785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.339 kcal (2) G-P(sol) polarization free energy of solvation -64.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds