Wall clock time and date at job start Mon Mar 30 2020 05:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47014 * 110.99993 * 2 1 4 4 C 1.53089 * 109.25973 * 177.60345 * 3 2 1 5 5 O 1.43022 * 109.25734 * 56.85052 * 4 3 2 6 6 C 1.43014 * 113.73619 * 301.32633 * 5 4 3 7 7 C 1.47011 * 111.00196 * 236.36478 * 2 1 3 8 8 H 1.08998 * 109.50841 * 62.45886 * 7 2 1 9 9 C 1.53000 * 109.50530 * 302.36848 * 7 2 1 10 10 N 1.46903 * 109.47007 * 305.37749 * 9 7 2 11 11 C 1.46911 * 110.99638 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46723 * 180.02562 * 11 10 9 13 13 O 1.21276 * 120.00329 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99843 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00196 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47191 * 179.97438 * 15 14 12 17 17 H 1.08008 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00155 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00030 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00063 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47271 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47159 * 120.00063 * 20 18 16 23 23 H 1.48504 * 109.46827 * 239.99293 * 20 18 16 24 24 H 1.09003 * 109.47385 * 66.47083 * 1 2 3 25 25 H 1.09006 * 109.47217 * 186.46709 * 1 2 3 26 26 H 1.08995 * 109.47498 * 306.46393 * 1 2 3 27 27 H 1.09000 * 109.50779 * 57.66734 * 3 2 1 28 28 H 1.09000 * 109.50526 * 297.54351 * 3 2 1 29 29 H 1.08992 * 109.50966 * 296.91353 * 4 3 2 30 30 H 1.09004 * 109.50821 * 176.78322 * 4 3 2 31 31 H 1.09001 * 109.50493 * 178.60556 * 6 5 4 32 32 H 1.08999 * 109.50490 * 298.73487 * 6 5 4 33 33 H 1.08998 * 109.47130 * 65.38206 * 9 7 2 34 34 H 1.09003 * 109.47041 * 185.37857 * 9 7 2 35 35 H 1.00897 * 110.99854 * 56.04929 * 10 9 7 36 36 H 1.08997 * 109.47202 * 300.00255 * 11 10 9 37 37 H 1.09001 * 109.47109 * 60.00315 * 11 10 9 38 38 H 0.97004 * 119.99826 * 359.97438 * 14 12 11 39 39 H 1.09006 * 109.46214 * 299.99691 * 15 14 12 40 40 H 1.09001 * 109.47225 * 59.99654 * 15 14 12 41 41 H 0.97002 * 120.00136 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5248 1.3265 0.0604 5 8 4.0174 0.5574 -1.0402 6 6 3.5250 -0.7849 -1.0708 7 6 1.9958 -0.7602 -1.1427 8 1 1.6828 -0.2843 -2.0719 9 6 1.4581 -2.1918 -1.0954 10 7 1.7718 -2.7899 0.2092 11 6 1.2688 -4.1678 0.2912 12 6 1.6080 -4.7467 1.6406 13 8 2.2098 -4.0777 2.4537 14 7 1.2434 -6.0084 1.9435 15 6 1.5726 -6.5711 3.2554 16 6 1.0568 -7.9845 3.3395 17 1 0.5355 -8.4201 2.4998 18 6 1.2503 -8.7218 4.4884 19 7 1.8855 -8.1917 5.5107 20 14 0.6116 -10.4741 4.5924 21 1 -0.0615 -10.8321 3.3181 22 1 1.7468 -11.4015 4.8306 23 1 -0.3586 -10.5817 5.7115 24 1 -0.3634 0.4103 -0.9422 25 1 -0.3634 -1.0212 0.1158 26 1 -0.3634 0.6107 0.8264 27 1 1.6132 1.9092 0.8681 28 1 1.6827 1.8825 -0.9110 29 1 3.8383 0.8645 0.9965 30 1 3.9220 2.3399 0.0030 31 1 3.9223 -1.2985 -1.9463 32 1 3.8386 -1.3083 -0.1676 33 1 0.3777 -2.1791 -1.2390 34 1 1.9228 -2.7807 -1.8862 35 1 1.4065 -2.2265 0.9624 36 1 0.1871 -4.1683 0.1574 37 1 1.7318 -4.7706 -0.4900 38 1 0.7624 -6.5437 1.2930 39 1 2.6543 -6.5700 3.3901 40 1 1.1086 -5.9683 4.0361 41 1 2.0220 -8.7106 6.3189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700165641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:03 Heat of formation + Delta-G solvation = -72.092178 kcal Electronic energy + Delta-G solvation = -21064.136084 eV Core-core repulsion = 17786.142952 eV Total energy + Delta-G solvation = -3277.993132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02602 -38.74344 -36.54480 -34.97552 -34.07025 -32.31248 -31.68541 -29.16498 -28.07540 -26.57014 -24.59756 -24.32525 -22.59476 -22.20225 -19.97127 -19.62429 -17.28504 -16.73289 -16.44699 -15.97678 -15.75476 -15.28821 -15.26882 -14.98594 -14.90689 -14.19707 -14.13912 -13.88522 -13.42230 -13.04422 -12.69757 -12.52260 -12.29335 -12.17326 -11.99499 -11.87952 -11.48399 -11.36082 -11.19293 -10.93852 -10.88704 -10.63481 -10.30855 -9.78934 -9.36359 -8.99202 -8.72247 -8.60761 -8.28305 -7.83072 -6.15448 -4.22239 3.23893 3.30863 3.33906 3.43703 3.49339 3.74767 3.88432 4.32144 4.50153 4.65345 4.68909 4.75873 4.99035 5.05535 5.08704 5.20585 5.23185 5.26125 5.35924 5.38941 5.44728 5.53228 5.54056 5.63168 5.66416 5.68136 5.73057 6.00077 6.67529 6.69463 6.95212 7.05754 7.34946 7.48127 7.54260 7.55805 7.69845 7.99102 8.67002 8.81232 9.16183 9.44680 10.94807 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.039481 B = 0.003024 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.032580 B = 9256.193516 C = 9370.821796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.532 5.532 3 C 0.021 3.979 4 C 0.063 3.937 5 O -0.391 6.391 6 C 0.071 3.929 7 C 0.053 3.947 8 H 0.050 0.950 9 C 0.066 3.934 10 N -0.663 5.663 11 C 0.039 3.961 12 C 0.496 3.504 13 O -0.541 6.541 14 N -0.716 5.716 15 C 0.251 3.749 16 C -0.542 4.542 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.025 0.975 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.362 0.638 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.389 0.611 39 H 0.027 0.973 40 H 0.025 0.975 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 16.417 -15.248 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.258 5.258 3 C -0.107 4.107 4 C -0.015 4.015 5 O -0.309 6.309 6 C -0.006 4.006 7 C -0.056 4.056 8 H 0.068 0.932 9 C -0.064 4.064 10 N -0.298 5.298 11 C -0.094 4.094 12 C 0.280 3.720 13 O -0.419 6.419 14 N -0.365 5.365 15 C 0.130 3.870 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.184 0.816 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.221 0.779 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.305 16.502 -14.322 21.889 hybrid contribution -2.144 -0.831 -0.626 2.383 sum -3.449 15.672 -14.948 21.931 Atomic orbital electron populations 1.22439 0.87206 1.02565 1.00478 1.62132 1.07815 1.13362 1.42481 1.22780 0.96846 0.89650 1.01440 1.22645 0.91900 0.96301 0.90610 1.87951 1.70089 1.24489 1.48374 1.22705 0.90806 0.83208 1.03878 1.22393 0.97235 0.94079 0.91872 0.93192 1.21955 0.97844 0.93380 0.93213 1.60071 1.63898 1.01704 1.04123 1.21856 0.98406 0.91840 0.97306 1.20346 0.80378 0.82718 0.88559 1.90672 1.40822 1.60054 1.50320 1.46447 1.57329 1.13153 1.19582 1.19082 0.96678 0.92870 0.78398 1.21269 1.38194 0.97769 1.00826 0.91897 1.24960 0.94961 0.98809 0.95355 1.69989 1.40495 1.37239 1.04539 0.86366 0.78611 0.83829 0.78123 1.19660 1.20788 1.20830 0.95612 0.91225 0.91030 0.89591 0.94286 0.91783 0.88741 0.88758 0.90055 0.95094 0.90247 0.81603 0.93217 0.88756 0.77867 0.95535 0.95655 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.89 60.06 0.53 0.72 16 2 N -0.53 -5.56 3.91 -234.58 -0.92 -6.47 16 3 C 0.02 0.19 5.66 -3.72 -0.02 0.17 16 4 C 0.06 0.61 7.01 37.20 0.26 0.88 16 5 O -0.39 -4.69 10.83 -35.23 -0.38 -5.07 16 6 C 0.07 0.80 6.22 37.21 0.23 1.03 16 7 C 0.05 0.54 2.35 -67.60 -0.16 0.39 16 8 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 9 C 0.07 0.67 4.74 -3.82 -0.02 0.66 16 10 N -0.66 -9.03 5.53 -115.05 -0.64 -9.66 16 11 C 0.04 0.54 6.17 -4.97 -0.03 0.51 16 12 C 0.50 9.87 7.87 -10.98 -0.09 9.79 16 13 O -0.54 -13.17 16.20 5.56 0.09 -13.08 16 14 N -0.72 -15.03 5.55 -61.47 -0.34 -15.37 16 15 C 0.25 6.69 5.43 -5.20 -0.03 6.66 16 16 C -0.54 -14.76 9.28 -34.45 -0.32 -15.08 16 17 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 20 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.07 0.65 6.25 -51.93 -0.32 0.32 16 26 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 27 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.10 7.68 -51.93 -0.40 0.70 16 33 H 0.03 0.29 6.75 -51.93 -0.35 -0.06 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.36 5.49 7.09 -39.29 -0.28 5.21 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -32.70 333.01 -7.91 -40.61 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.72 Total: 6.30 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 0.27 Total: 7.37 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -1.16 Total: -57.01 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.29 Total: -18.15 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.70 -7.91 -40.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700165641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.486 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds