Wall clock time and date at job start Mon Mar 30 2020 05:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47014 * 110.99993 * 2 1 4 4 C 1.53089 * 109.25973 * 177.60345 * 3 2 1 5 5 O 1.43022 * 109.25734 * 56.85052 * 4 3 2 6 6 C 1.43014 * 113.73619 * 301.32633 * 5 4 3 7 7 C 1.47011 * 111.00196 * 236.36478 * 2 1 3 8 8 H 1.08998 * 109.50841 * 62.45886 * 7 2 1 9 9 C 1.53000 * 109.50530 * 302.36848 * 7 2 1 10 10 N 1.46903 * 109.47007 * 305.37749 * 9 7 2 11 11 C 1.46911 * 110.99638 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46723 * 180.02562 * 11 10 9 13 13 O 1.21276 * 120.00329 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99843 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00196 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47191 * 179.97438 * 15 14 12 17 17 H 1.08008 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00155 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00030 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00063 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47271 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47159 * 120.00063 * 20 18 16 23 23 H 1.48504 * 109.46827 * 239.99293 * 20 18 16 24 24 H 1.09003 * 109.47385 * 66.47083 * 1 2 3 25 25 H 1.09006 * 109.47217 * 186.46709 * 1 2 3 26 26 H 1.08995 * 109.47498 * 306.46393 * 1 2 3 27 27 H 1.09000 * 109.50779 * 57.66734 * 3 2 1 28 28 H 1.09000 * 109.50526 * 297.54351 * 3 2 1 29 29 H 1.08992 * 109.50966 * 296.91353 * 4 3 2 30 30 H 1.09004 * 109.50821 * 176.78322 * 4 3 2 31 31 H 1.09001 * 109.50493 * 178.60556 * 6 5 4 32 32 H 1.08999 * 109.50490 * 298.73487 * 6 5 4 33 33 H 1.08998 * 109.47130 * 65.38206 * 9 7 2 34 34 H 1.09003 * 109.47041 * 185.37857 * 9 7 2 35 35 H 1.00897 * 110.99854 * 56.04929 * 10 9 7 36 36 H 1.08997 * 109.47202 * 300.00255 * 11 10 9 37 37 H 1.09001 * 109.47109 * 60.00315 * 11 10 9 38 38 H 0.97004 * 119.99826 * 359.97438 * 14 12 11 39 39 H 1.09006 * 109.46214 * 299.99691 * 15 14 12 40 40 H 1.09001 * 109.47225 * 59.99654 * 15 14 12 41 41 H 0.97002 * 120.00136 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5248 1.3265 0.0604 5 8 4.0174 0.5574 -1.0402 6 6 3.5250 -0.7849 -1.0708 7 6 1.9958 -0.7602 -1.1427 8 1 1.6828 -0.2843 -2.0719 9 6 1.4581 -2.1918 -1.0954 10 7 1.7718 -2.7899 0.2092 11 6 1.2688 -4.1678 0.2912 12 6 1.6080 -4.7467 1.6406 13 8 2.2098 -4.0777 2.4537 14 7 1.2434 -6.0084 1.9435 15 6 1.5726 -6.5711 3.2554 16 6 1.0568 -7.9845 3.3395 17 1 0.5355 -8.4201 2.4998 18 6 1.2503 -8.7218 4.4884 19 7 1.8855 -8.1917 5.5107 20 14 0.6116 -10.4741 4.5924 21 1 -0.0615 -10.8321 3.3181 22 1 1.7468 -11.4015 4.8306 23 1 -0.3586 -10.5817 5.7115 24 1 -0.3634 0.4103 -0.9422 25 1 -0.3634 -1.0212 0.1158 26 1 -0.3634 0.6107 0.8264 27 1 1.6132 1.9092 0.8681 28 1 1.6827 1.8825 -0.9110 29 1 3.8383 0.8645 0.9965 30 1 3.9220 2.3399 0.0030 31 1 3.9223 -1.2985 -1.9463 32 1 3.8386 -1.3083 -0.1676 33 1 0.3777 -2.1791 -1.2390 34 1 1.9228 -2.7807 -1.8862 35 1 1.4065 -2.2265 0.9624 36 1 0.1871 -4.1683 0.1574 37 1 1.7318 -4.7706 -0.4900 38 1 0.7624 -6.5437 1.2930 39 1 2.6543 -6.5700 3.3901 40 1 1.1086 -5.9683 4.0361 41 1 2.0220 -8.7106 6.3189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700165641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:03 Heat of formation + Delta-G solvation = -99.784144 kcal Electronic energy + Delta-G solvation = -21065.336897 eV Core-core repulsion = 17786.142952 eV Total energy + Delta-G solvation = -3279.193945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.89018 -40.33509 -37.48192 -36.19086 -35.75026 -34.31942 -32.62163 -30.07865 -29.63179 -27.91822 -25.81697 -25.10114 -24.17914 -23.30558 -21.34915 -20.76686 -18.99045 -17.74646 -17.53079 -17.22443 -17.09740 -16.73368 -16.46793 -16.15477 -15.86057 -15.64320 -15.41268 -14.80214 -14.60417 -14.46547 -14.07368 -13.94748 -13.42817 -13.32261 -13.20368 -12.87621 -12.84095 -12.75657 -12.69225 -12.22079 -12.20807 -11.95620 -11.46790 -11.44653 -10.80718 -10.73826 -10.58775 -9.79224 -9.34402 -9.25215 -8.28386 -6.44995 1.43682 1.44912 1.58391 1.84108 2.31017 2.52241 2.79148 2.95679 3.06522 3.39005 3.85656 3.90679 3.96471 4.02272 4.23177 4.30412 4.31823 4.42082 4.51248 4.54527 4.58730 4.66281 4.73051 4.73303 4.86924 4.92330 4.97926 5.11441 5.13337 5.26007 5.50950 5.70965 5.86506 5.91052 5.98795 6.07446 6.21906 6.44208 6.67035 6.98450 7.24876 7.56707 8.84119 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.039481 B = 0.003024 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.032580 B = 9256.193516 C = 9370.821796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.553 5.553 3 C 0.024 3.976 4 C 0.058 3.942 5 O -0.405 6.405 6 C 0.071 3.929 7 C 0.058 3.942 8 H 0.061 0.939 9 C 0.070 3.930 10 N -0.681 5.681 11 C 0.056 3.944 12 C 0.491 3.509 13 O -0.592 6.592 14 N -0.710 5.710 15 C 0.267 3.733 16 C -0.554 4.554 17 H 0.085 0.915 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.986 3.014 21 H -0.252 1.252 22 H -0.280 1.280 23 H -0.279 1.279 24 H 0.037 0.963 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.351 0.649 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.408 0.592 39 H -0.016 1.016 40 H -0.015 1.015 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 15.791 -17.663 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.279 5.279 3 C -0.104 4.104 4 C -0.019 4.019 5 O -0.324 6.324 6 C -0.006 4.006 7 C -0.051 4.051 8 H 0.079 0.921 9 C -0.059 4.059 10 N -0.315 5.315 11 C -0.076 4.076 12 C 0.278 3.722 13 O -0.473 6.473 14 N -0.361 5.361 15 C 0.144 3.856 16 C -0.592 4.592 17 H 0.103 0.897 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.809 3.191 21 H -0.175 1.175 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.171 0.829 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.244 0.756 39 H 0.002 0.998 40 H 0.003 0.997 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.019 15.883 -16.806 23.320 hybrid contribution -1.567 -0.533 0.140 1.661 sum -4.587 15.350 -16.666 23.117 Atomic orbital electron populations 1.22423 0.86262 1.02473 1.01228 1.62124 1.08820 1.14079 1.42900 1.22774 0.96039 0.89325 1.02248 1.22791 0.92802 0.96927 0.89334 1.87924 1.70716 1.24782 1.49020 1.22692 0.91979 0.82886 1.03004 1.22335 0.96165 0.94317 0.92278 0.92084 1.22024 0.99007 0.93245 0.91600 1.60063 1.64566 1.01461 1.05386 1.21770 1.00471 0.92081 0.93267 1.21500 0.78611 0.81659 0.90404 1.90650 1.42896 1.61130 1.52591 1.46179 1.57811 1.14099 1.17982 1.18502 0.93665 0.93091 0.80353 1.21660 1.38108 0.97743 1.01664 0.89721 1.26092 0.94902 1.04004 0.94785 1.70153 1.42004 1.39487 1.05428 0.85099 0.77908 0.77238 0.78882 1.17510 1.20531 1.20497 0.94480 0.91652 0.90686 0.88540 0.93567 0.93501 0.86576 0.87461 0.93005 0.93419 0.88638 0.82866 0.90075 0.85998 0.75606 0.99770 0.99661 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.89 127.69 1.13 1.52 16 2 N -0.55 -10.87 3.91 -896.09 -3.50 -14.37 16 3 C 0.02 0.41 5.66 86.31 0.49 0.90 16 4 C 0.06 1.12 7.01 72.01 0.50 1.62 16 5 O -0.41 -9.52 10.83 -148.98 -1.61 -11.14 16 6 C 0.07 1.57 6.22 72.02 0.45 2.02 16 7 C 0.06 1.08 2.35 44.93 0.11 1.19 16 8 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 9 C 0.07 1.24 4.74 86.30 0.41 1.65 16 10 N -0.68 -17.59 5.53 -517.90 -2.87 -20.46 16 11 C 0.06 1.43 6.17 85.55 0.53 1.96 16 12 C 0.49 19.55 7.87 87.66 0.69 20.24 16 13 O -0.59 -29.94 16.20 -3.02 -0.05 -29.99 16 14 N -0.71 -29.81 5.55 -466.79 -2.59 -32.40 16 15 C 0.27 14.82 5.43 85.63 0.46 15.28 16 16 C -0.55 -30.22 9.28 25.60 0.24 -29.98 16 17 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 18 C 0.00 0.09 5.46 84.65 0.46 0.55 16 19 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 20 Si 0.99 42.36 29.54 68.60 2.03 44.39 16 21 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 1.09 6.25 -2.38 -0.01 1.07 16 26 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 27 H 0.10 1.41 8.12 -2.39 -0.02 1.39 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 30 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.44 7.68 -2.39 -0.02 1.42 16 33 H 0.05 0.72 6.75 -2.39 -0.02 0.70 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.35 10.49 7.09 -89.70 -0.64 9.86 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.41 13.86 8.32 -92.70 -0.77 13.09 16 39 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 40 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 41 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -74.14 333.01 -3.22 -77.35 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.38 Total: 26.11 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 5.47 Total: 16.95 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -8.67 Total: -123.67 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.66 Total: -41.13 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -74.14 -3.22 -77.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700165641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.429 kcal (2) G-P(sol) polarization free energy of solvation -74.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds