Wall clock time and date at job start Mon Mar 30 2020 05:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99960 * 2 1 4 4 H 1.48496 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46650 * 299.99287 * 3 2 1 6 6 H 1.48494 * 109.47322 * 59.99462 * 3 2 1 7 7 C 1.37878 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47250 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47463 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47463 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47419 * 180.02562 * 12 11 10 14 14 C 1.46904 * 111.00030 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47043 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.52131 * 299.99572 * 15 14 13 17 17 O 1.42903 * 109.47256 * 60.12977 * 16 15 14 18 18 C 1.53175 * 109.57235 * 179.84027 * 15 14 13 19 19 C 1.53171 * 109.03879 * 297.03975 * 18 15 14 20 20 C 1.53097 * 109.16748 * 303.02336 * 19 18 15 21 21 O 1.42909 * 109.41380 * 57.60564 * 20 19 18 22 22 C 1.42911 * 114.09556 * 298.84703 * 21 20 19 23 23 H 0.96996 * 120.00170 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47527 * 59.99958 * 9 7 2 25 25 H 1.09006 * 109.47412 * 299.99784 * 9 7 2 26 26 H 1.09004 * 109.47043 * 59.99936 * 10 9 7 27 27 H 1.08995 * 109.47462 * 300.00358 * 10 9 7 28 28 H 1.08999 * 109.47319 * 60.00271 * 11 10 9 29 29 H 1.09006 * 109.47407 * 300.00228 * 11 10 9 30 30 H 1.09004 * 109.47043 * 60.00061 * 12 11 10 31 31 H 1.08995 * 109.47462 * 300.00483 * 12 11 10 32 32 H 1.00899 * 110.99933 * 56.04463 * 13 12 11 33 33 H 1.09001 * 109.47153 * 59.99742 * 14 13 12 34 34 H 1.08994 * 109.47013 * 299.99506 * 14 13 12 35 35 H 1.08997 * 109.47286 * 300.12538 * 16 15 14 36 36 H 1.09008 * 109.47201 * 180.12318 * 16 15 14 37 37 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.54440 * 56.91349 * 18 15 14 39 39 H 1.09002 * 109.53869 * 177.17435 * 18 15 14 40 40 H 1.08996 * 109.52561 * 183.11669 * 19 18 15 41 41 H 1.08999 * 109.57322 * 62.95893 * 19 18 15 42 42 H 1.08996 * 109.47707 * 297.62719 * 20 19 18 43 43 H 1.08997 * 109.48177 * 177.58719 * 20 19 18 44 44 H 1.09001 * 109.47440 * 301.17369 * 22 21 20 45 45 H 1.09002 * 109.48832 * 181.15142 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 7 1.7401 -7.4222 0.0018 14 6 2.6646 -8.5639 0.0031 15 6 1.8645 -9.8680 0.0037 16 6 0.9821 -9.9259 1.2522 17 8 0.0803 -8.8174 1.2500 18 6 2.8264 -11.0601 0.0009 19 6 3.6499 -11.0347 -1.2903 20 6 2.7013 -11.0507 -2.4919 21 8 1.8141 -9.9333 -2.4117 22 6 0.9848 -9.9291 -1.2478 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8720 -3.6044 -0.8894 28 1 0.8534 -5.0452 -0.8886 29 1 0.8539 -5.0446 0.8914 30 1 3.1011 -6.0918 0.8918 31 1 3.1013 -6.0928 -0.8881 32 1 1.1039 -7.4725 -0.7798 33 1 3.2919 -8.5224 0.8935 34 1 3.2931 -8.5233 -0.8865 35 1 1.6092 -9.8823 2.1427 36 1 0.4141 -10.8563 1.2529 37 1 -0.5110 -8.7898 2.0147 38 1 3.4934 -10.9924 0.8603 39 1 2.2569 -11.9881 0.0520 40 1 4.2981 -11.9102 -1.3263 41 1 4.2576 -10.1302 -1.3181 42 1 2.1234 -11.9748 -2.4863 43 1 3.2806 -10.9895 -3.4132 44 1 0.3845 -10.8386 -1.2261 45 1 0.3273 -9.0601 -1.2728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700938001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:50 Heat of formation + Delta-G solvation = -118.953734 kcal Electronic energy + Delta-G solvation = -21510.387722 eV Core-core repulsion = 18333.902864 eV Total energy + Delta-G solvation = -3176.484858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36101 -37.08425 -36.03977 -34.51841 -33.59370 -32.23455 -31.26063 -28.26337 -26.28156 -25.48781 -25.27918 -23.42647 -22.11739 -21.18553 -19.94919 -18.96770 -17.26363 -16.52448 -16.25221 -16.13019 -15.85757 -15.29489 -14.85629 -14.64564 -14.35939 -14.17923 -13.51212 -13.44386 -13.19902 -12.89443 -12.68591 -12.31831 -12.20554 -11.66794 -11.52671 -11.46324 -11.28544 -11.07597 -10.96399 -10.81348 -10.51803 -10.36942 -10.31409 -10.27093 -9.93974 -9.60299 -9.51268 -9.15314 -8.89805 -8.26324 -7.93951 -5.91292 -3.93046 3.36129 3.43092 3.47819 3.65088 4.01897 4.25051 4.42897 4.52823 4.59442 4.64196 4.81235 4.90413 5.09904 5.14257 5.21884 5.28264 5.33812 5.42495 5.44056 5.50441 5.54383 5.60611 5.66163 5.71747 5.77735 5.87720 5.98430 6.00427 6.10412 6.32337 6.42955 6.67516 6.97522 6.97934 7.11782 7.23866 7.44268 7.73235 7.76061 7.79801 7.96960 8.11095 8.54132 9.14919 9.70377 11.20149 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.033482 B = 0.002916 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.058714 B = 9600.005368 C = 9893.688879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.111 4.111 12 C 0.060 3.940 13 N -0.665 5.665 14 C 0.078 3.922 15 C -0.091 4.091 16 C 0.099 3.901 17 O -0.536 6.536 18 C -0.111 4.111 19 C -0.157 4.157 20 C 0.059 3.941 21 O -0.379 6.379 22 C 0.072 3.928 23 H 0.259 0.741 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.019 0.981 32 H 0.339 0.661 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.042 0.958 36 H 0.033 0.967 37 H 0.369 0.631 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.014 -27.475 0.056 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.149 4.149 12 C -0.069 4.069 13 N -0.296 5.296 14 C -0.052 4.052 15 C -0.092 4.092 16 C 0.020 3.980 17 O -0.339 6.339 18 C -0.149 4.149 19 C -0.195 4.195 20 C -0.018 4.018 21 O -0.298 6.298 22 C -0.005 4.005 23 H 0.068 0.932 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.158 0.842 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.214 0.786 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.090 -27.085 0.029 27.392 hybrid contribution 0.593 0.537 -0.085 0.804 sum 4.683 -26.548 -0.055 26.958 Atomic orbital electron populations 1.69982 1.06024 1.26314 1.51287 1.25039 0.94842 0.99195 0.95536 0.86563 0.80131 0.83964 0.77507 1.19791 1.21071 1.21067 1.21351 0.93045 0.91271 1.49947 0.92767 1.19094 0.94053 0.91342 0.97126 1.21589 0.99043 0.94187 0.99891 1.21580 0.97821 0.93663 1.01874 1.22034 0.96117 0.89294 0.99416 1.60469 1.18566 1.00454 1.50147 1.21805 0.93919 0.89435 1.00020 1.21282 0.96100 0.95925 0.95905 1.21856 0.91446 0.88601 0.96066 1.86771 1.51595 1.47193 1.48334 1.21561 0.97863 0.97155 0.98300 1.22220 0.98836 1.03187 0.95249 1.22569 0.91602 0.89320 0.98344 1.87992 1.53164 1.45944 1.42682 1.22631 0.91788 1.02542 0.83556 0.93164 0.96741 0.96629 0.93629 0.93823 0.92944 0.91703 0.91885 0.96253 0.84178 0.91816 0.94988 0.94014 0.94894 0.78598 0.91125 0.91570 0.90848 0.90595 0.93407 0.89033 0.93494 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.29 55.43 0.74 -27.15 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.33 29.54 -169.99 -5.02 17.30 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.52 -15.34 9.11 -34.44 -0.31 -15.66 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.40 5.15 -26.73 -0.14 -2.53 16 11 C -0.11 -2.07 5.47 -26.73 -0.15 -2.22 16 12 C 0.06 0.95 5.69 -3.82 -0.02 0.93 16 13 N -0.66 -9.25 4.35 -113.78 -0.49 -9.75 16 14 C 0.08 0.92 4.25 -3.82 -0.02 0.90 16 15 C -0.09 -0.86 0.52 -154.37 -0.08 -0.94 16 16 C 0.10 0.87 5.92 37.16 0.22 1.09 16 17 O -0.54 -5.61 10.90 -35.23 -0.38 -5.99 16 18 C -0.11 -0.82 4.81 -26.55 -0.13 -0.94 16 19 C -0.16 -1.15 5.77 -26.59 -0.15 -1.30 16 20 C 0.06 0.48 6.84 37.21 0.25 0.73 16 21 O -0.38 -4.30 10.19 -35.23 -0.36 -4.66 16 22 C 0.07 0.73 5.09 37.20 0.19 0.92 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.34 4.86 6.73 -39.29 -0.26 4.60 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.03 0.40 6.15 -51.93 -0.32 0.08 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.03 0.24 8.14 -51.92 -0.42 -0.18 16 37 H 0.37 2.61 9.12 45.56 0.42 3.02 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.64 6.63 -51.93 -0.34 0.30 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.11 1.25 6.09 -51.93 -0.32 0.93 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -32.67 347.83 -8.41 -41.08 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.56 Total: 0.97 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -0.57 Total: -17.06 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.24 Total: -36.89 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.74 Total: -10.65 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.67 -8.41 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700938001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.876 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds