Wall clock time and date at job start Mon Mar 30 2020 05:18:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86799 * 119.99960 * 2 1
4 4 H 1.48496 * 109.46954 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.46650 * 299.99287 * 3 2 1
6 6 H 1.48494 * 109.47322 * 59.99462 * 3 2 1
7 7 C 1.37878 * 120.00154 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00266 * 180.02562 * 7 2 1
9 9 C 1.50700 * 119.99840 * 0.02562 * 7 2 1
10 10 C 1.52998 * 109.47250 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47463 * 179.97438 * 10 9 7
12 12 C 1.52998 * 109.47463 * 180.02562 * 11 10 9
13 13 N 1.46901 * 109.47419 * 180.02562 * 12 11 10
14 14 C 1.46904 * 111.00030 * 180.02562 * 13 12 11
15 15 C 1.52999 * 109.47043 * 179.97438 * 14 13 12
16 16 C 1.52999 * 109.52131 * 299.99572 * 15 14 13
17 17 O 1.42903 * 109.47256 * 60.12977 * 16 15 14
18 18 C 1.53175 * 109.57235 * 179.84027 * 15 14 13
19 19 C 1.53171 * 109.03879 * 297.03975 * 18 15 14
20 20 C 1.53097 * 109.16748 * 303.02336 * 19 18 15
21 21 O 1.42909 * 109.41380 * 57.60564 * 20 19 18
22 22 C 1.42911 * 114.09556 * 298.84703 * 21 20 19
23 23 H 0.96996 * 120.00170 * 0.02562 * 1 2 3
24 24 H 1.08999 * 109.47527 * 59.99958 * 9 7 2
25 25 H 1.09006 * 109.47412 * 299.99784 * 9 7 2
26 26 H 1.09004 * 109.47043 * 59.99936 * 10 9 7
27 27 H 1.08995 * 109.47462 * 300.00358 * 10 9 7
28 28 H 1.08999 * 109.47319 * 60.00271 * 11 10 9
29 29 H 1.09006 * 109.47407 * 300.00228 * 11 10 9
30 30 H 1.09004 * 109.47043 * 60.00061 * 12 11 10
31 31 H 1.08995 * 109.47462 * 300.00483 * 12 11 10
32 32 H 1.00899 * 110.99933 * 56.04463 * 13 12 11
33 33 H 1.09001 * 109.47153 * 59.99742 * 14 13 12
34 34 H 1.08994 * 109.47013 * 299.99506 * 14 13 12
35 35 H 1.08997 * 109.47286 * 300.12538 * 16 15 14
36 36 H 1.09008 * 109.47201 * 180.12318 * 16 15 14
37 37 H 0.96700 * 114.00311 * 180.02562 * 17 16 15
38 38 H 1.08997 * 109.54440 * 56.91349 * 18 15 14
39 39 H 1.09002 * 109.53869 * 177.17435 * 18 15 14
40 40 H 1.08996 * 109.52561 * 183.11669 * 19 18 15
41 41 H 1.08999 * 109.57322 * 62.95893 * 19 18 15
42 42 H 1.08996 * 109.47707 * 297.62719 * 20 19 18
43 43 H 1.08997 * 109.48177 * 177.58719 * 20 19 18
44 44 H 1.09001 * 109.47440 * 301.17369 * 22 21 20
45 45 H 1.09002 * 109.48832 * 181.15142 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3963 -1.2126
6 1 1.8903 2.3965 1.2124
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1941 0.0010
9 6 1.2511 -2.4991 0.0005
10 6 2.2453 -3.6621 0.0005
11 6 1.4803 -4.9871 0.0012
12 6 2.4745 -6.1500 0.0018
13 7 1.7401 -7.4222 0.0018
14 6 2.6646 -8.5639 0.0031
15 6 1.8645 -9.8680 0.0037
16 6 0.9821 -9.9259 1.2522
17 8 0.0803 -8.8174 1.2500
18 6 2.8264 -11.0601 0.0009
19 6 3.6499 -11.0347 -1.2903
20 6 2.7013 -11.0507 -2.4919
21 8 1.8141 -9.9333 -2.4117
22 6 0.9848 -9.9291 -1.2478
23 1 -0.4850 0.8400 -0.0004
24 1 0.6247 -2.5571 -0.8896
25 1 0.6240 -2.5568 0.8903
26 1 2.8719 -3.6043 0.8905
27 1 2.8720 -3.6044 -0.8894
28 1 0.8534 -5.0452 -0.8886
29 1 0.8539 -5.0446 0.8914
30 1 3.1011 -6.0918 0.8918
31 1 3.1013 -6.0928 -0.8881
32 1 1.1039 -7.4725 -0.7798
33 1 3.2919 -8.5224 0.8935
34 1 3.2931 -8.5233 -0.8865
35 1 1.6092 -9.8823 2.1427
36 1 0.4141 -10.8563 1.2529
37 1 -0.5110 -8.7898 2.0147
38 1 3.4934 -10.9924 0.8603
39 1 2.2569 -11.9881 0.0520
40 1 4.2981 -11.9102 -1.3263
41 1 4.2576 -10.1302 -1.3181
42 1 2.1234 -11.9748 -2.4863
43 1 3.2806 -10.9895 -3.4132
44 1 0.3845 -10.8386 -1.2261
45 1 0.3273 -9.0601 -1.2728
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000700938001.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:50
Heat of formation + Delta-G solvation = -118.953734 kcal
Electronic energy + Delta-G solvation = -21510.387722 eV
Core-core repulsion = 18333.902864 eV
Total energy + Delta-G solvation = -3176.484858 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 271.193 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.36101 -37.08425 -36.03977 -34.51841 -33.59370 -32.23455 -31.26063 -28.26337
-26.28156 -25.48781 -25.27918 -23.42647 -22.11739 -21.18553 -19.94919 -18.96770
-17.26363 -16.52448 -16.25221 -16.13019 -15.85757 -15.29489 -14.85629 -14.64564
-14.35939 -14.17923 -13.51212 -13.44386 -13.19902 -12.89443 -12.68591 -12.31831
-12.20554 -11.66794 -11.52671 -11.46324 -11.28544 -11.07597 -10.96399 -10.81348
-10.51803 -10.36942 -10.31409 -10.27093 -9.93974 -9.60299 -9.51268 -9.15314
-8.89805 -8.26324 -7.93951 -5.91292 -3.93046 3.36129 3.43092 3.47819
3.65088 4.01897 4.25051 4.42897 4.52823 4.59442 4.64196 4.81235
4.90413 5.09904 5.14257 5.21884 5.28264 5.33812 5.42495 5.44056
5.50441 5.54383 5.60611 5.66163 5.71747 5.77735 5.87720 5.98430
6.00427 6.10412 6.32337 6.42955 6.67516 6.97522 6.97934 7.11782
7.23866 7.44268 7.73235 7.76061 7.79801 7.96960 8.11095 8.54132
9.14919 9.70377 11.20149
Molecular weight = 271.19amu
Principal moments of inertia in cm(-1)
A = 0.033482 B = 0.002916 C = 0.002829
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 836.058714 B = 9600.005368 C = 9893.688879
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.054 3.946
3 Si 0.890 3.110
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.518 4.518
8 H 0.054 0.946
9 C 0.021 3.979
10 C -0.109 4.109
11 C -0.111 4.111
12 C 0.060 3.940
13 N -0.665 5.665
14 C 0.078 3.922
15 C -0.091 4.091
16 C 0.099 3.901
17 O -0.536 6.536
18 C -0.111 4.111
19 C -0.157 4.157
20 C 0.059 3.941
21 O -0.379 6.379
22 C 0.072 3.928
23 H 0.259 0.741
24 H 0.014 0.986
25 H 0.015 0.985
26 H 0.045 0.955
27 H 0.043 0.957
28 H 0.052 0.948
29 H 0.064 0.936
30 H 0.063 0.937
31 H 0.019 0.981
32 H 0.339 0.661
33 H 0.063 0.937
34 H 0.032 0.968
35 H 0.042 0.958
36 H 0.033 0.967
37 H 0.369 0.631
38 H 0.070 0.930
39 H 0.066 0.934
40 H 0.073 0.927
41 H 0.075 0.925
42 H 0.048 0.952
43 H 0.092 0.908
44 H 0.047 0.953
45 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.014 -27.475 0.056 27.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.146 4.146
3 Si 0.718 3.282
4 H -0.198 1.198
5 H -0.211 1.211
6 H -0.211 1.211
7 C -0.556 4.556
8 H 0.072 0.928
9 C -0.016 4.016
10 C -0.147 4.147
11 C -0.149 4.149
12 C -0.069 4.069
13 N -0.296 5.296
14 C -0.052 4.052
15 C -0.092 4.092
16 C 0.020 3.980
17 O -0.339 6.339
18 C -0.149 4.149
19 C -0.195 4.195
20 C -0.018 4.018
21 O -0.298 6.298
22 C -0.005 4.005
23 H 0.068 0.932
24 H 0.033 0.967
25 H 0.034 0.966
26 H 0.064 0.936
27 H 0.062 0.938
28 H 0.071 0.929
29 H 0.083 0.917
30 H 0.081 0.919
31 H 0.037 0.963
32 H 0.158 0.842
33 H 0.082 0.918
34 H 0.050 0.950
35 H 0.060 0.940
36 H 0.051 0.949
37 H 0.214 0.786
38 H 0.089 0.911
39 H 0.084 0.916
40 H 0.092 0.908
41 H 0.094 0.906
42 H 0.066 0.934
43 H 0.110 0.890
44 H 0.065 0.935
45 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges 4.090 -27.085 0.029 27.392
hybrid contribution 0.593 0.537 -0.085 0.804
sum 4.683 -26.548 -0.055 26.958
Atomic orbital electron populations
1.69982 1.06024 1.26314 1.51287 1.25039 0.94842 0.99195 0.95536
0.86563 0.80131 0.83964 0.77507 1.19791 1.21071 1.21067 1.21351
0.93045 0.91271 1.49947 0.92767 1.19094 0.94053 0.91342 0.97126
1.21589 0.99043 0.94187 0.99891 1.21580 0.97821 0.93663 1.01874
1.22034 0.96117 0.89294 0.99416 1.60469 1.18566 1.00454 1.50147
1.21805 0.93919 0.89435 1.00020 1.21282 0.96100 0.95925 0.95905
1.21856 0.91446 0.88601 0.96066 1.86771 1.51595 1.47193 1.48334
1.21561 0.97863 0.97155 0.98300 1.22220 0.98836 1.03187 0.95249
1.22569 0.91602 0.89320 0.98344 1.87992 1.53164 1.45944 1.42682
1.22631 0.91788 1.02542 0.83556 0.93164 0.96741 0.96629 0.93629
0.93823 0.92944 0.91703 0.91885 0.96253 0.84178 0.91816 0.94988
0.94014 0.94894 0.78598 0.91125 0.91570 0.90848 0.90595 0.93407
0.89033 0.93494 0.87459
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.88 13.29 55.43 0.74 -27.15 16
2 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16
3 Si 0.89 22.33 29.54 -169.99 -5.02 17.30 16
4 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16
5 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16
6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16
7 C -0.52 -15.34 9.11 -34.44 -0.31 -15.66 16
8 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16
9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16
10 C -0.11 -2.40 5.15 -26.73 -0.14 -2.53 16
11 C -0.11 -2.07 5.47 -26.73 -0.15 -2.22 16
12 C 0.06 0.95 5.69 -3.82 -0.02 0.93 16
13 N -0.66 -9.25 4.35 -113.78 -0.49 -9.75 16
14 C 0.08 0.92 4.25 -3.82 -0.02 0.90 16
15 C -0.09 -0.86 0.52 -154.37 -0.08 -0.94 16
16 C 0.10 0.87 5.92 37.16 0.22 1.09 16
17 O -0.54 -5.61 10.90 -35.23 -0.38 -5.99 16
18 C -0.11 -0.82 4.81 -26.55 -0.13 -0.94 16
19 C -0.16 -1.15 5.77 -26.59 -0.15 -1.30 16
20 C 0.06 0.48 6.84 37.21 0.25 0.73 16
21 O -0.38 -4.30 10.19 -35.23 -0.36 -4.66 16
22 C 0.07 0.73 5.09 37.20 0.19 0.92 16
23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
24 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16
25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16
27 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16
28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16
32 H 0.34 4.86 6.73 -39.29 -0.26 4.60 16
33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
34 H 0.03 0.40 6.15 -51.93 -0.32 0.08 16
35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16
36 H 0.03 0.24 8.14 -51.92 -0.42 -0.18 16
37 H 0.37 2.61 9.12 45.56 0.42 3.02 16
38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
41 H 0.08 0.64 6.63 -51.93 -0.34 0.30 16
42 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16
43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
44 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
45 H 0.11 1.25 6.09 -51.93 -0.32 0.93 16
LS Contribution 347.83 15.07 5.24 5.24
Total: -1.00 -32.67 347.83 -8.41 -41.08
By element:
Atomic # 1 Polarization: 8.53 SS G_CDS: -7.56 Total: 0.97 kcal
Atomic # 6 Polarization: -16.49 SS G_CDS: -0.57 Total: -17.06 kcal
Atomic # 7 Polarization: -37.14 SS G_CDS: 0.24 Total: -36.89 kcal
Atomic # 8 Polarization: -9.90 SS G_CDS: -0.74 Total: -10.65 kcal
Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -32.67 -8.41 -41.08 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000700938001.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.876 kcal
(2) G-P(sol) polarization free energy of solvation -32.670 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.547 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.954 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds