Wall clock time and date at job start Mon Mar 30 2020 05:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99960 * 2 1 4 4 H 1.48496 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46650 * 299.99287 * 3 2 1 6 6 H 1.48494 * 109.47322 * 59.99462 * 3 2 1 7 7 C 1.37878 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47250 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47463 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47463 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47419 * 180.02562 * 12 11 10 14 14 C 1.46904 * 111.00030 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47043 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.52131 * 299.99572 * 15 14 13 17 17 O 1.42903 * 109.47256 * 60.12977 * 16 15 14 18 18 C 1.53175 * 109.57235 * 179.84027 * 15 14 13 19 19 C 1.53171 * 109.03879 * 297.03975 * 18 15 14 20 20 C 1.53097 * 109.16748 * 303.02336 * 19 18 15 21 21 O 1.42909 * 109.41380 * 57.60564 * 20 19 18 22 22 C 1.42911 * 114.09556 * 298.84703 * 21 20 19 23 23 H 0.96996 * 120.00170 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47527 * 59.99958 * 9 7 2 25 25 H 1.09006 * 109.47412 * 299.99784 * 9 7 2 26 26 H 1.09004 * 109.47043 * 59.99936 * 10 9 7 27 27 H 1.08995 * 109.47462 * 300.00358 * 10 9 7 28 28 H 1.08999 * 109.47319 * 60.00271 * 11 10 9 29 29 H 1.09006 * 109.47407 * 300.00228 * 11 10 9 30 30 H 1.09004 * 109.47043 * 60.00061 * 12 11 10 31 31 H 1.08995 * 109.47462 * 300.00483 * 12 11 10 32 32 H 1.00899 * 110.99933 * 56.04463 * 13 12 11 33 33 H 1.09001 * 109.47153 * 59.99742 * 14 13 12 34 34 H 1.08994 * 109.47013 * 299.99506 * 14 13 12 35 35 H 1.08997 * 109.47286 * 300.12538 * 16 15 14 36 36 H 1.09008 * 109.47201 * 180.12318 * 16 15 14 37 37 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.54440 * 56.91349 * 18 15 14 39 39 H 1.09002 * 109.53869 * 177.17435 * 18 15 14 40 40 H 1.08996 * 109.52561 * 183.11669 * 19 18 15 41 41 H 1.08999 * 109.57322 * 62.95893 * 19 18 15 42 42 H 1.08996 * 109.47707 * 297.62719 * 20 19 18 43 43 H 1.08997 * 109.48177 * 177.58719 * 20 19 18 44 44 H 1.09001 * 109.47440 * 301.17369 * 22 21 20 45 45 H 1.09002 * 109.48832 * 181.15142 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 7 1.7401 -7.4222 0.0018 14 6 2.6646 -8.5639 0.0031 15 6 1.8645 -9.8680 0.0037 16 6 0.9821 -9.9259 1.2522 17 8 0.0803 -8.8174 1.2500 18 6 2.8264 -11.0601 0.0009 19 6 3.6499 -11.0347 -1.2903 20 6 2.7013 -11.0507 -2.4919 21 8 1.8141 -9.9333 -2.4117 22 6 0.9848 -9.9291 -1.2478 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8720 -3.6044 -0.8894 28 1 0.8534 -5.0452 -0.8886 29 1 0.8539 -5.0446 0.8914 30 1 3.1011 -6.0918 0.8918 31 1 3.1013 -6.0928 -0.8881 32 1 1.1039 -7.4725 -0.7798 33 1 3.2919 -8.5224 0.8935 34 1 3.2931 -8.5233 -0.8865 35 1 1.6092 -9.8823 2.1427 36 1 0.4141 -10.8563 1.2529 37 1 -0.5110 -8.7898 2.0147 38 1 3.4934 -10.9924 0.8603 39 1 2.2569 -11.9881 0.0520 40 1 4.2981 -11.9102 -1.3263 41 1 4.2576 -10.1302 -1.3181 42 1 2.1234 -11.9748 -2.4863 43 1 3.2806 -10.9895 -3.4132 44 1 0.3845 -10.8386 -1.2261 45 1 0.3273 -9.0601 -1.2728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700938001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:50 Heat of formation + Delta-G solvation = -141.973692 kcal Electronic energy + Delta-G solvation = -21511.385942 eV Core-core repulsion = 18333.902864 eV Total energy + Delta-G solvation = -3177.483078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09767 -37.98526 -37.25349 -35.85661 -34.91124 -33.79594 -32.33158 -29.96894 -27.08837 -26.77916 -26.14390 -24.92337 -22.86396 -22.64594 -21.76354 -19.76766 -18.42703 -17.99160 -17.23627 -17.00332 -16.96003 -16.51999 -16.07351 -15.98795 -15.59838 -15.14704 -14.64290 -14.43025 -14.30981 -14.10108 -13.74042 -13.59544 -13.49491 -13.31893 -12.91610 -12.82351 -12.37884 -12.31655 -12.14846 -12.09839 -12.03007 -11.85116 -11.52693 -11.37757 -11.29514 -11.13836 -10.88696 -10.63304 -10.55778 -10.31342 -9.06165 -8.19520 -6.31263 1.39284 1.40242 1.53856 2.41220 2.95914 3.12813 3.22097 3.46742 3.69214 3.85946 4.00085 4.10962 4.16652 4.22019 4.24185 4.41825 4.51421 4.58035 4.59287 4.64484 4.67882 4.72665 4.76363 4.80951 4.85150 4.89357 4.95216 4.97147 5.05093 5.12010 5.25672 5.27509 5.31085 5.33377 5.37663 5.55842 5.78424 5.87079 6.24304 6.26966 6.28732 6.57725 6.86180 7.18339 7.37921 8.92733 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.033482 B = 0.002916 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.058714 B = 9600.005368 C = 9893.688879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.097 4.097 11 C -0.099 4.099 12 C 0.072 3.928 13 N -0.664 5.664 14 C 0.080 3.920 15 C -0.088 4.088 16 C 0.099 3.901 17 O -0.560 6.560 18 C -0.107 4.107 19 C -0.154 4.154 20 C 0.051 3.949 21 O -0.407 6.407 22 C 0.073 3.927 23 H 0.264 0.736 24 H -0.012 1.012 25 H -0.010 1.010 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.018 0.982 32 H 0.336 0.664 33 H 0.064 0.936 34 H 0.024 0.976 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.381 0.619 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.060 0.940 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 -28.642 0.401 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.135 4.135 11 C -0.137 4.137 12 C -0.058 4.058 13 N -0.295 5.295 14 C -0.050 4.050 15 C -0.089 4.089 16 C 0.020 3.980 17 O -0.366 6.366 18 C -0.145 4.145 19 C -0.192 4.192 20 C -0.025 4.025 21 O -0.326 6.326 22 C -0.004 4.004 23 H 0.073 0.927 24 H 0.006 0.994 25 H 0.008 0.992 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.155 0.845 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.229 0.771 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.445 -28.277 0.383 28.799 hybrid contribution 0.127 0.868 -0.210 0.902 sum 5.572 -27.409 0.174 27.970 Atomic orbital electron populations 1.70116 1.07870 1.27728 1.51775 1.26045 0.95834 1.03536 0.94703 0.85353 0.79016 0.78520 0.77876 1.18571 1.20248 1.20175 1.21771 0.93540 0.92532 1.50428 0.92262 1.19012 0.94462 0.93270 0.94568 1.21403 0.97986 0.93853 1.00230 1.21392 0.97897 0.93247 1.01178 1.21818 0.95185 0.89232 0.99536 1.60462 1.18768 1.00316 1.49996 1.21843 0.93774 0.89808 0.99531 1.21283 0.96257 0.95438 0.95896 1.21929 0.91424 0.88944 0.95683 1.86728 1.52257 1.48164 1.49423 1.21573 0.97647 0.96723 0.98574 1.22202 0.98708 1.03444 0.94840 1.22773 0.91610 0.88963 0.99135 1.87951 1.53894 1.47525 1.43211 1.22573 0.91820 1.02242 0.83742 0.92742 0.99370 0.99171 0.93092 0.93478 0.93530 0.92517 0.91521 0.96342 0.84514 0.91784 0.95839 0.93715 0.92921 0.77150 0.90341 0.89851 0.88652 0.92129 0.91955 0.88469 0.92175 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.04 13.29 21.45 0.28 -58.76 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 3 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.54 -32.66 9.11 25.60 0.23 -32.42 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.35 4.97 29.85 0.15 1.50 16 10 C -0.10 -4.29 5.15 30.59 0.16 -4.14 16 11 C -0.10 -3.74 5.47 30.59 0.17 -3.57 16 12 C 0.07 2.24 5.69 86.30 0.49 2.73 16 13 N -0.66 -18.31 4.35 -513.89 -2.23 -20.54 16 14 C 0.08 1.81 4.25 86.30 0.37 2.17 16 15 C -0.09 -1.52 0.52 -52.09 -0.03 -1.55 16 16 C 0.10 1.56 5.92 71.98 0.43 1.98 16 17 O -0.56 -11.27 10.90 -148.98 -1.62 -12.89 16 18 C -0.11 -1.31 4.81 30.71 0.15 -1.16 16 19 C -0.15 -1.93 5.77 30.68 0.18 -1.75 16 20 C 0.05 0.76 6.84 72.01 0.49 1.25 16 21 O -0.41 -8.94 10.19 -148.98 -1.52 -10.46 16 22 C 0.07 1.43 5.09 72.01 0.37 1.80 16 23 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 24 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 25 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 26 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.34 9.74 6.73 -89.69 -0.60 9.14 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.02 0.58 6.15 -2.39 -0.01 0.57 16 35 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.38 5.10 9.12 -74.06 -0.68 4.43 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.95 6.63 -2.39 -0.02 0.94 16 42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 2.04 6.09 -2.39 -0.01 2.02 16 Total: -1.00 -70.41 347.83 0.22 -70.20 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -0.33 Total: 17.61 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 3.61 Total: -32.92 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -1.95 Total: -79.30 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -3.14 Total: -23.35 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.41 0.22 -70.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700938001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.777 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds