Wall clock time and date at job start Mon Mar 30 2020 05:18:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86799 * 119.99960 * 2 1
4 4 H 1.48496 * 109.46954 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.46650 * 299.99287 * 3 2 1
6 6 H 1.48494 * 109.47322 * 59.99462 * 3 2 1
7 7 C 1.37878 * 120.00154 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00266 * 180.02562 * 7 2 1
9 9 C 1.50700 * 119.99840 * 0.02562 * 7 2 1
10 10 C 1.52998 * 109.47250 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47463 * 179.97438 * 10 9 7
12 12 C 1.52998 * 109.47463 * 180.02562 * 11 10 9
13 13 N 1.46901 * 109.47419 * 180.02562 * 12 11 10
14 14 C 1.46904 * 111.00030 * 180.02562 * 13 12 11
15 15 C 1.52999 * 109.47043 * 179.97438 * 14 13 12
16 16 C 1.52999 * 109.52131 * 299.99572 * 15 14 13
17 17 O 1.42903 * 109.47256 * 60.12977 * 16 15 14
18 18 C 1.53175 * 109.57235 * 179.84027 * 15 14 13
19 19 C 1.53171 * 109.03879 * 297.03975 * 18 15 14
20 20 C 1.53097 * 109.16748 * 303.02336 * 19 18 15
21 21 O 1.42909 * 109.41380 * 57.60564 * 20 19 18
22 22 C 1.42911 * 114.09556 * 298.84703 * 21 20 19
23 23 H 0.96996 * 120.00170 * 0.02562 * 1 2 3
24 24 H 1.08999 * 109.47527 * 59.99958 * 9 7 2
25 25 H 1.09006 * 109.47412 * 299.99784 * 9 7 2
26 26 H 1.09004 * 109.47043 * 59.99936 * 10 9 7
27 27 H 1.08995 * 109.47462 * 300.00358 * 10 9 7
28 28 H 1.08999 * 109.47319 * 60.00271 * 11 10 9
29 29 H 1.09006 * 109.47407 * 300.00228 * 11 10 9
30 30 H 1.09004 * 109.47043 * 60.00061 * 12 11 10
31 31 H 1.08995 * 109.47462 * 300.00483 * 12 11 10
32 32 H 1.00899 * 110.99933 * 56.04463 * 13 12 11
33 33 H 1.09001 * 109.47153 * 59.99742 * 14 13 12
34 34 H 1.08994 * 109.47013 * 299.99506 * 14 13 12
35 35 H 1.08997 * 109.47286 * 300.12538 * 16 15 14
36 36 H 1.09008 * 109.47201 * 180.12318 * 16 15 14
37 37 H 0.96700 * 114.00311 * 180.02562 * 17 16 15
38 38 H 1.08997 * 109.54440 * 56.91349 * 18 15 14
39 39 H 1.09002 * 109.53869 * 177.17435 * 18 15 14
40 40 H 1.08996 * 109.52561 * 183.11669 * 19 18 15
41 41 H 1.08999 * 109.57322 * 62.95893 * 19 18 15
42 42 H 1.08996 * 109.47707 * 297.62719 * 20 19 18
43 43 H 1.08997 * 109.48177 * 177.58719 * 20 19 18
44 44 H 1.09001 * 109.47440 * 301.17369 * 22 21 20
45 45 H 1.09002 * 109.48832 * 181.15142 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3963 -1.2126
6 1 1.8903 2.3965 1.2124
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1941 0.0010
9 6 1.2511 -2.4991 0.0005
10 6 2.2453 -3.6621 0.0005
11 6 1.4803 -4.9871 0.0012
12 6 2.4745 -6.1500 0.0018
13 7 1.7401 -7.4222 0.0018
14 6 2.6646 -8.5639 0.0031
15 6 1.8645 -9.8680 0.0037
16 6 0.9821 -9.9259 1.2522
17 8 0.0803 -8.8174 1.2500
18 6 2.8264 -11.0601 0.0009
19 6 3.6499 -11.0347 -1.2903
20 6 2.7013 -11.0507 -2.4919
21 8 1.8141 -9.9333 -2.4117
22 6 0.9848 -9.9291 -1.2478
23 1 -0.4850 0.8400 -0.0004
24 1 0.6247 -2.5571 -0.8896
25 1 0.6240 -2.5568 0.8903
26 1 2.8719 -3.6043 0.8905
27 1 2.8720 -3.6044 -0.8894
28 1 0.8534 -5.0452 -0.8886
29 1 0.8539 -5.0446 0.8914
30 1 3.1011 -6.0918 0.8918
31 1 3.1013 -6.0928 -0.8881
32 1 1.1039 -7.4725 -0.7798
33 1 3.2919 -8.5224 0.8935
34 1 3.2931 -8.5233 -0.8865
35 1 1.6092 -9.8823 2.1427
36 1 0.4141 -10.8563 1.2529
37 1 -0.5110 -8.7898 2.0147
38 1 3.4934 -10.9924 0.8603
39 1 2.2569 -11.9881 0.0520
40 1 4.2981 -11.9102 -1.3263
41 1 4.2576 -10.1302 -1.3181
42 1 2.1234 -11.9748 -2.4863
43 1 3.2806 -10.9895 -3.4132
44 1 0.3845 -10.8386 -1.2261
45 1 0.3273 -9.0601 -1.2728
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000700938001.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:50
Heat of formation + Delta-G solvation = -141.973692 kcal
Electronic energy + Delta-G solvation = -21511.385942 eV
Core-core repulsion = 18333.902864 eV
Total energy + Delta-G solvation = -3177.483078 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 271.193 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-41.09767 -37.98526 -37.25349 -35.85661 -34.91124 -33.79594 -32.33158 -29.96894
-27.08837 -26.77916 -26.14390 -24.92337 -22.86396 -22.64594 -21.76354 -19.76766
-18.42703 -17.99160 -17.23627 -17.00332 -16.96003 -16.51999 -16.07351 -15.98795
-15.59838 -15.14704 -14.64290 -14.43025 -14.30981 -14.10108 -13.74042 -13.59544
-13.49491 -13.31893 -12.91610 -12.82351 -12.37884 -12.31655 -12.14846 -12.09839
-12.03007 -11.85116 -11.52693 -11.37757 -11.29514 -11.13836 -10.88696 -10.63304
-10.55778 -10.31342 -9.06165 -8.19520 -6.31263 1.39284 1.40242 1.53856
2.41220 2.95914 3.12813 3.22097 3.46742 3.69214 3.85946 4.00085
4.10962 4.16652 4.22019 4.24185 4.41825 4.51421 4.58035 4.59287
4.64484 4.67882 4.72665 4.76363 4.80951 4.85150 4.89357 4.95216
4.97147 5.05093 5.12010 5.25672 5.27509 5.31085 5.33377 5.37663
5.55842 5.78424 5.87079 6.24304 6.26966 6.28732 6.57725 6.86180
7.18339 7.37921 8.92733
Molecular weight = 271.19amu
Principal moments of inertia in cm(-1)
A = 0.033482 B = 0.002916 C = 0.002829
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 836.058714 B = 9600.005368 C = 9893.688879
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.004 4.004
3 Si 0.968 3.032
4 H -0.262 1.262
5 H -0.277 1.277
6 H -0.276 1.276
7 C -0.545 4.545
8 H 0.059 0.941
9 C 0.024 3.976
10 C -0.097 4.097
11 C -0.099 4.099
12 C 0.072 3.928
13 N -0.664 5.664
14 C 0.080 3.920
15 C -0.088 4.088
16 C 0.099 3.901
17 O -0.560 6.560
18 C -0.107 4.107
19 C -0.154 4.154
20 C 0.051 3.949
21 O -0.407 6.407
22 C 0.073 3.927
23 H 0.264 0.736
24 H -0.012 1.012
25 H -0.010 1.010
26 H 0.050 0.950
27 H 0.046 0.954
28 H 0.046 0.954
29 H 0.056 0.944
30 H 0.066 0.934
31 H 0.018 0.982
32 H 0.336 0.664
33 H 0.064 0.936
34 H 0.024 0.976
35 H 0.045 0.955
36 H 0.053 0.947
37 H 0.381 0.619
38 H 0.078 0.922
39 H 0.083 0.917
40 H 0.095 0.905
41 H 0.060 0.940
42 H 0.062 0.938
43 H 0.097 0.903
44 H 0.060 0.940
45 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.363 -28.642 0.401 29.143
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.201 4.201
3 Si 0.792 3.208
4 H -0.186 1.186
5 H -0.202 1.202
6 H -0.202 1.202
7 C -0.583 4.583
8 H 0.077 0.923
9 C -0.013 4.013
10 C -0.135 4.135
11 C -0.137 4.137
12 C -0.058 4.058
13 N -0.295 5.295
14 C -0.050 4.050
15 C -0.089 4.089
16 C 0.020 3.980
17 O -0.366 6.366
18 C -0.145 4.145
19 C -0.192 4.192
20 C -0.025 4.025
21 O -0.326 6.326
22 C -0.004 4.004
23 H 0.073 0.927
24 H 0.006 0.994
25 H 0.008 0.992
26 H 0.069 0.931
27 H 0.065 0.935
28 H 0.065 0.935
29 H 0.075 0.925
30 H 0.085 0.915
31 H 0.037 0.963
32 H 0.155 0.845
33 H 0.082 0.918
34 H 0.042 0.958
35 H 0.063 0.937
36 H 0.071 0.929
37 H 0.229 0.771
38 H 0.097 0.903
39 H 0.101 0.899
40 H 0.113 0.887
41 H 0.079 0.921
42 H 0.080 0.920
43 H 0.115 0.885
44 H 0.078 0.922
45 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 5.445 -28.277 0.383 28.799
hybrid contribution 0.127 0.868 -0.210 0.902
sum 5.572 -27.409 0.174 27.970
Atomic orbital electron populations
1.70116 1.07870 1.27728 1.51775 1.26045 0.95834 1.03536 0.94703
0.85353 0.79016 0.78520 0.77876 1.18571 1.20248 1.20175 1.21771
0.93540 0.92532 1.50428 0.92262 1.19012 0.94462 0.93270 0.94568
1.21403 0.97986 0.93853 1.00230 1.21392 0.97897 0.93247 1.01178
1.21818 0.95185 0.89232 0.99536 1.60462 1.18768 1.00316 1.49996
1.21843 0.93774 0.89808 0.99531 1.21283 0.96257 0.95438 0.95896
1.21929 0.91424 0.88944 0.95683 1.86728 1.52257 1.48164 1.49423
1.21573 0.97647 0.96723 0.98574 1.22202 0.98708 1.03444 0.94840
1.22773 0.91610 0.88963 0.99135 1.87951 1.53894 1.47525 1.43211
1.22573 0.91820 1.02242 0.83742 0.92742 0.99370 0.99171 0.93092
0.93478 0.93530 0.92517 0.91521 0.96342 0.84514 0.91784 0.95839
0.93715 0.92921 0.77150 0.90341 0.89851 0.88652 0.92129 0.91955
0.88469 0.92175 0.89503
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -59.04 13.29 21.45 0.28 -58.76 16
2 C 0.00 -0.23 5.46 84.66 0.46 0.23 16
3 Si 0.97 45.74 29.54 68.60 2.03 47.77 16
4 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16
5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16
7 C -0.54 -32.66 9.11 25.60 0.23 -32.42 16
8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16
9 C 0.02 1.35 4.97 29.85 0.15 1.50 16
10 C -0.10 -4.29 5.15 30.59 0.16 -4.14 16
11 C -0.10 -3.74 5.47 30.59 0.17 -3.57 16
12 C 0.07 2.24 5.69 86.30 0.49 2.73 16
13 N -0.66 -18.31 4.35 -513.89 -2.23 -20.54 16
14 C 0.08 1.81 4.25 86.30 0.37 2.17 16
15 C -0.09 -1.52 0.52 -52.09 -0.03 -1.55 16
16 C 0.10 1.56 5.92 71.98 0.43 1.98 16
17 O -0.56 -11.27 10.90 -148.98 -1.62 -12.89 16
18 C -0.11 -1.31 4.81 30.71 0.15 -1.16 16
19 C -0.15 -1.93 5.77 30.68 0.18 -1.75 16
20 C 0.05 0.76 6.84 72.01 0.49 1.25 16
21 O -0.41 -8.94 10.19 -148.98 -1.52 -10.46 16
22 C 0.07 1.43 5.09 72.01 0.37 1.80 16
23 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16
24 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16
25 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16
26 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16
27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16
29 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16
30 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16
31 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16
32 H 0.34 9.74 6.73 -89.69 -0.60 9.14 16
33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16
34 H 0.02 0.58 6.15 -2.39 -0.01 0.57 16
35 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16
36 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16
37 H 0.38 5.10 9.12 -74.06 -0.68 4.43 16
38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16
41 H 0.06 0.95 6.63 -2.39 -0.02 0.94 16
42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16
44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
45 H 0.09 2.04 6.09 -2.39 -0.01 2.02 16
Total: -1.00 -70.41 347.83 0.22 -70.20
By element:
Atomic # 1 Polarization: 17.93 SS G_CDS: -0.33 Total: 17.61 kcal
Atomic # 6 Polarization: -36.53 SS G_CDS: 3.61 Total: -32.92 kcal
Atomic # 7 Polarization: -77.35 SS G_CDS: -1.95 Total: -79.30 kcal
Atomic # 8 Polarization: -20.21 SS G_CDS: -3.14 Total: -23.35 kcal
Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal
Total: -70.41 0.22 -70.20 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000700938001.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.777 kcal
(2) G-P(sol) polarization free energy of solvation -70.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.191 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds