Wall clock time and date at job start Mon Mar 30 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47039 * 239.99681 * 2 1 3 5 5 C 1.53001 * 109.47039 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47521 * 180.02562 * 5 4 2 7 7 N 1.46895 * 109.47171 * 300.00168 * 5 4 2 8 8 C 1.52997 * 109.47151 * 60.00157 * 5 4 2 9 9 C 1.53002 * 109.47084 * 300.00175 * 8 5 4 10 10 H 1.08997 * 109.46822 * 299.99733 * 9 8 5 11 11 O 1.42898 * 109.46935 * 180.02562 * 9 8 5 12 12 C 1.42899 * 114.00233 * 89.99975 * 11 9 8 13 13 C 1.53010 * 109.47070 * 179.97438 * 12 11 9 14 14 O 1.42897 * 109.46742 * 65.00040 * 13 12 11 15 15 C 1.42902 * 113.99852 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47408 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99675 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99985 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00037 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46767 * 60.00061 * 20 18 16 22 22 H 1.48497 * 109.47194 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47251 * 300.00016 * 20 18 16 24 24 C 1.52993 * 109.47146 * 59.99679 * 9 8 5 25 25 H 1.09003 * 109.47108 * 299.99968 * 1 2 3 26 26 H 1.08993 * 109.46999 * 60.00649 * 1 2 3 27 27 H 1.09005 * 109.47076 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47008 * 168.41106 * 3 2 1 29 29 H 1.09001 * 109.46974 * 288.40899 * 3 2 1 30 30 H 1.08999 * 109.47183 * 48.41039 * 3 2 1 31 31 H 1.09000 * 109.47785 * 299.99900 * 4 2 1 32 32 H 1.08995 * 109.47035 * 60.00193 * 4 2 1 33 33 H 1.00902 * 111.00203 * 180.02562 * 7 5 4 34 34 H 1.00907 * 111.00266 * 303.95182 * 7 5 4 35 35 H 1.08999 * 109.47461 * 179.97438 * 8 5 4 36 36 H 1.09004 * 109.47595 * 60.00144 * 8 5 4 37 37 H 1.09000 * 109.47158 * 60.00026 * 12 11 9 38 38 H 1.08996 * 109.46986 * 299.99550 * 12 11 9 39 39 H 1.08994 * 109.47166 * 304.99573 * 13 12 11 40 40 H 1.09000 * 109.46459 * 184.99937 * 13 12 11 41 41 H 1.09007 * 109.46960 * 60.00257 * 15 14 13 42 42 H 1.09001 * 109.47308 * 300.00141 * 15 14 13 43 43 H 0.96995 * 119.99998 * 359.97438 * 19 18 16 44 44 H 1.09004 * 109.46637 * 60.00580 * 24 9 8 45 45 H 1.09003 * 109.46984 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 1 3.9334 -1.2353 -2.1390 7 7 4.0602 0.6629 -1.2486 8 6 4.0795 -1.4434 0.0004 9 6 3.5694 -0.7222 1.2496 10 1 3.9332 0.3053 1.2498 11 8 4.0458 -1.3958 2.4164 12 6 5.3054 -0.9161 2.8910 13 6 5.7148 -1.7045 4.1368 14 8 5.9394 -3.0707 3.7832 15 6 6.3293 -3.8985 4.8809 16 6 6.5376 -5.3102 4.3963 17 1 6.3877 -5.5510 3.3543 18 6 6.9196 -6.2942 5.2833 19 7 7.1017 -6.0010 6.5523 20 14 7.1785 -8.0439 4.6824 21 1 8.2442 -8.0595 3.6484 22 1 7.5824 -8.9044 5.8233 23 1 5.9142 -8.5588 4.0981 24 6 2.0395 -0.7216 1.2492 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1102 1.4495 0.2065 29 1 1.8551 1.8932 -0.9751 30 1 1.5180 2.0124 0.7686 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1391 33 1 5.0688 0.6895 -1.2488 34 1 3.6850 1.1795 -2.0300 35 1 5.1695 -1.4443 0.0004 36 1 3.7158 -2.4710 0.0002 37 1 5.2203 0.1411 3.1422 38 1 6.0594 -1.0456 2.1146 39 1 4.9200 -1.6474 4.8803 40 1 6.6302 -1.2809 4.5501 41 1 5.5474 -3.8871 5.6403 42 1 7.2575 -3.5204 5.3094 43 1 6.9676 -5.0924 6.8642 44 1 1.6758 -1.7492 1.2491 45 1 1.6761 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703743392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:48 Heat of formation + Delta-G solvation = -111.827593 kcal Electronic energy + Delta-G solvation = -21848.267498 eV Core-core repulsion = 18672.091653 eV Total energy + Delta-G solvation = -3176.175845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17496 -37.56109 -36.27000 -34.37671 -32.98369 -31.34896 -29.36706 -28.54764 -27.05003 -26.44703 -26.19841 -22.49195 -22.20398 -21.94695 -20.69396 -18.47145 -16.95984 -16.80692 -16.14963 -15.85290 -15.43948 -14.94393 -14.66546 -14.39274 -14.30265 -13.79952 -13.70950 -13.52141 -13.23946 -12.68241 -12.52560 -12.23994 -12.01045 -11.90278 -11.62722 -11.57334 -11.52887 -11.18901 -11.14789 -10.80646 -10.67454 -10.55193 -10.42063 -10.13020 -10.05324 -10.03893 -9.24450 -8.81030 -8.58626 -8.51288 -8.19568 -6.42611 -4.10450 3.45450 3.48793 3.67444 3.84370 4.24891 4.47383 4.54841 4.63068 4.80884 4.85041 5.04281 5.08685 5.20667 5.26401 5.35422 5.42720 5.46821 5.50629 5.57173 5.59752 5.63400 5.64483 5.78029 5.86922 5.90915 5.91448 5.96703 6.04385 6.09986 6.12970 6.24339 6.26826 6.35269 6.37087 6.71085 6.80604 6.87987 7.16331 7.18210 7.59394 7.94611 8.23036 8.68737 8.86010 9.60080 10.97825 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.003446 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.439076 B = 8122.914903 C = 8341.352507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C -0.150 4.150 4 C -0.105 4.105 5 C 0.093 3.907 6 H 0.036 0.964 7 N -0.835 5.835 8 C -0.134 4.134 9 C 0.095 3.905 10 H 0.072 0.928 11 O -0.372 6.372 12 C 0.072 3.928 13 C 0.061 3.939 14 O -0.380 6.380 15 C 0.185 3.815 16 C -0.594 4.594 17 H 0.060 0.940 18 C 0.016 3.984 19 N -0.912 5.912 20 Si 1.079 2.921 21 H -0.286 1.286 22 H -0.281 1.281 23 H -0.286 1.286 24 C -0.103 4.103 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.108 0.892 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.336 0.664 34 H 0.340 0.660 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.050 0.950 41 H -0.004 1.004 42 H -0.006 1.006 43 H 0.267 0.733 44 H 0.066 0.934 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.564 16.297 -16.172 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.052 4.052 3 C -0.207 4.207 4 C -0.142 4.142 5 C -0.018 4.018 6 H 0.054 0.946 7 N -0.366 5.366 8 C -0.172 4.172 9 C 0.037 3.963 10 H 0.090 0.910 11 O -0.291 6.291 12 C -0.005 4.005 13 C -0.017 4.017 14 O -0.299 6.299 15 C 0.110 3.890 16 C -0.633 4.633 17 H 0.078 0.922 18 C -0.187 4.187 19 N -0.549 5.549 20 Si 0.906 3.094 21 H -0.212 1.212 22 H -0.206 1.206 23 H -0.212 1.212 24 C -0.141 4.141 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.013 0.987 42 H 0.011 0.989 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.640 14.591 -15.076 23.090 hybrid contribution 0.145 1.646 -1.260 2.078 sum -9.495 16.237 -16.336 24.913 Atomic orbital electron populations 1.21900 0.95104 1.01525 1.01456 1.20349 0.94389 0.96455 0.93969 1.22380 1.05054 0.93390 0.99857 1.21697 0.94126 1.00723 0.97691 1.21296 0.95167 0.88712 0.96651 0.94561 1.59362 1.13373 1.13586 1.50248 1.22051 1.00852 1.00097 0.94243 1.21989 0.94104 0.95649 0.84526 0.90975 1.88041 1.36073 1.61145 1.43869 1.22521 0.86056 0.95717 0.96203 1.22318 0.98414 0.85823 0.95146 1.87945 1.89153 1.16637 1.36144 1.20287 0.92631 0.90476 0.85558 1.21907 1.50652 0.92700 0.98002 0.92167 1.25940 0.93731 1.05160 0.93854 1.70796 1.46257 1.22749 1.15059 0.83402 0.76672 0.74001 0.75280 1.21245 1.20638 1.21198 1.21592 0.93996 1.01030 0.97462 0.92691 0.92955 0.92885 0.87364 0.93963 0.94936 0.91434 0.92237 0.85156 0.84748 0.91903 0.90631 0.92900 0.93074 0.93733 0.93215 0.98673 0.98854 0.92326 0.91527 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.44 37.16 0.31 -0.94 16 2 C -0.05 -0.50 0.77 -154.51 -0.12 -0.62 16 3 C -0.15 -1.37 7.05 37.16 0.26 -1.11 16 4 C -0.10 -0.94 4.50 -26.73 -0.12 -1.06 16 5 C 0.09 0.85 3.57 -67.72 -0.24 0.61 16 6 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 7 N -0.84 -6.12 4.93 -4.67 -0.02 -6.15 16 8 C -0.13 -1.67 5.22 -26.73 -0.14 -1.81 16 9 C 0.09 1.27 2.27 -26.73 -0.06 1.21 16 10 H 0.07 0.90 5.54 -51.93 -0.29 0.61 16 11 O -0.37 -6.59 9.95 -40.08 -0.40 -6.99 16 12 C 0.07 1.18 6.13 37.16 0.23 1.40 16 13 C 0.06 1.20 6.32 37.16 0.23 1.44 16 14 O -0.38 -9.85 10.29 -40.08 -0.41 -10.27 16 15 C 0.19 5.30 5.00 36.01 0.18 5.48 16 16 C -0.59 -18.40 9.43 -34.44 -0.32 -18.73 16 17 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 18 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 19 N -0.91 -28.68 13.65 55.43 0.76 -27.92 16 20 Si 1.08 26.11 29.90 -169.99 -5.08 21.03 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.10 -1.27 4.38 -26.74 -0.12 -1.38 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.11 1.05 3.69 -51.93 -0.19 0.86 16 29 H 0.04 0.35 7.72 -51.93 -0.40 -0.06 16 30 H 0.03 0.30 8.10 -51.93 -0.42 -0.12 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.34 2.26 9.04 -39.29 -0.36 1.91 16 34 H 0.34 1.98 8.53 -39.29 -0.34 1.64 16 35 H 0.06 0.81 7.87 -51.93 -0.41 0.41 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.05 0.82 7.87 -51.93 -0.41 0.41 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.00 -0.13 8.01 -51.92 -0.42 -0.54 16 42 H -0.01 -0.18 8.01 -51.93 -0.42 -0.59 16 43 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -33.70 345.66 -8.17 -41.87 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.21 Total: -1.67 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 0.00 Total: -15.11 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.73 Total: -34.07 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.81 Total: -17.25 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.70 -8.17 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703743392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.959 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds