Wall clock time and date at job start Mon Mar 30 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47039 * 239.99681 * 2 1 3 5 5 C 1.53001 * 109.47039 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47521 * 180.02562 * 5 4 2 7 7 N 1.46895 * 109.47171 * 300.00168 * 5 4 2 8 8 C 1.52997 * 109.47151 * 60.00157 * 5 4 2 9 9 C 1.53002 * 109.47084 * 300.00175 * 8 5 4 10 10 H 1.08997 * 109.46822 * 299.99733 * 9 8 5 11 11 O 1.42898 * 109.46935 * 180.02562 * 9 8 5 12 12 C 1.42899 * 114.00233 * 89.99975 * 11 9 8 13 13 C 1.53010 * 109.47070 * 179.97438 * 12 11 9 14 14 O 1.42897 * 109.46742 * 65.00040 * 13 12 11 15 15 C 1.42902 * 113.99852 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47408 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99675 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99985 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00037 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46767 * 60.00061 * 20 18 16 22 22 H 1.48497 * 109.47194 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47251 * 300.00016 * 20 18 16 24 24 C 1.52993 * 109.47146 * 59.99679 * 9 8 5 25 25 H 1.09003 * 109.47108 * 299.99968 * 1 2 3 26 26 H 1.08993 * 109.46999 * 60.00649 * 1 2 3 27 27 H 1.09005 * 109.47076 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47008 * 168.41106 * 3 2 1 29 29 H 1.09001 * 109.46974 * 288.40899 * 3 2 1 30 30 H 1.08999 * 109.47183 * 48.41039 * 3 2 1 31 31 H 1.09000 * 109.47785 * 299.99900 * 4 2 1 32 32 H 1.08995 * 109.47035 * 60.00193 * 4 2 1 33 33 H 1.00902 * 111.00203 * 180.02562 * 7 5 4 34 34 H 1.00907 * 111.00266 * 303.95182 * 7 5 4 35 35 H 1.08999 * 109.47461 * 179.97438 * 8 5 4 36 36 H 1.09004 * 109.47595 * 60.00144 * 8 5 4 37 37 H 1.09000 * 109.47158 * 60.00026 * 12 11 9 38 38 H 1.08996 * 109.46986 * 299.99550 * 12 11 9 39 39 H 1.08994 * 109.47166 * 304.99573 * 13 12 11 40 40 H 1.09000 * 109.46459 * 184.99937 * 13 12 11 41 41 H 1.09007 * 109.46960 * 60.00257 * 15 14 13 42 42 H 1.09001 * 109.47308 * 300.00141 * 15 14 13 43 43 H 0.96995 * 119.99998 * 359.97438 * 19 18 16 44 44 H 1.09004 * 109.46637 * 60.00580 * 24 9 8 45 45 H 1.09003 * 109.46984 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 1 3.9334 -1.2353 -2.1390 7 7 4.0602 0.6629 -1.2486 8 6 4.0795 -1.4434 0.0004 9 6 3.5694 -0.7222 1.2496 10 1 3.9332 0.3053 1.2498 11 8 4.0458 -1.3958 2.4164 12 6 5.3054 -0.9161 2.8910 13 6 5.7148 -1.7045 4.1368 14 8 5.9394 -3.0707 3.7832 15 6 6.3293 -3.8985 4.8809 16 6 6.5376 -5.3102 4.3963 17 1 6.3877 -5.5510 3.3543 18 6 6.9196 -6.2942 5.2833 19 7 7.1017 -6.0010 6.5523 20 14 7.1785 -8.0439 4.6824 21 1 8.2442 -8.0595 3.6484 22 1 7.5824 -8.9044 5.8233 23 1 5.9142 -8.5588 4.0981 24 6 2.0395 -0.7216 1.2492 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1102 1.4495 0.2065 29 1 1.8551 1.8932 -0.9751 30 1 1.5180 2.0124 0.7686 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1391 33 1 5.0688 0.6895 -1.2488 34 1 3.6850 1.1795 -2.0300 35 1 5.1695 -1.4443 0.0004 36 1 3.7158 -2.4710 0.0002 37 1 5.2203 0.1411 3.1422 38 1 6.0594 -1.0456 2.1146 39 1 4.9200 -1.6474 4.8803 40 1 6.6302 -1.2809 4.5501 41 1 5.5474 -3.8871 5.6403 42 1 7.2575 -3.5204 5.3094 43 1 6.9676 -5.0924 6.8642 44 1 1.6758 -1.7492 1.2491 45 1 1.6761 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703743392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:48 Heat of formation + Delta-G solvation = -134.736816 kcal Electronic energy + Delta-G solvation = -21849.260917 eV Core-core repulsion = 18672.091653 eV Total energy + Delta-G solvation = -3177.169263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.08117 -39.11210 -37.89189 -35.26075 -35.11604 -32.48740 -30.65029 -29.54823 -28.39968 -27.75559 -27.28253 -24.78818 -23.54190 -23.06491 -21.55108 -19.36607 -19.18753 -18.00836 -17.69816 -16.97907 -16.52645 -16.16460 -15.87197 -15.68329 -15.59263 -15.50740 -14.90360 -14.72734 -14.39110 -14.17076 -13.74366 -13.57565 -13.30305 -13.06381 -12.94346 -12.78636 -12.56070 -12.54836 -12.35277 -12.11528 -12.03138 -11.90189 -11.68350 -11.36082 -11.25651 -11.02415 -10.88315 -10.87351 -10.41518 -10.38038 -9.15322 -8.86595 -6.57329 1.51033 1.60503 1.82068 2.48062 2.68679 3.00806 3.01683 3.54877 3.70912 3.84510 3.98072 4.08331 4.13539 4.18843 4.24758 4.33749 4.37558 4.43315 4.48699 4.50623 4.51326 4.65651 4.71745 4.76072 4.86176 4.88952 4.92659 5.03902 5.04802 5.10391 5.12810 5.23101 5.25113 5.42074 5.51104 5.55353 5.64306 5.88936 5.97313 6.26615 6.29455 6.40427 6.63900 6.67195 7.23693 8.54798 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.003446 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.439076 B = 8122.914903 C = 8341.352507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C -0.145 4.145 4 C -0.104 4.104 5 C 0.103 3.897 6 H 0.043 0.957 7 N -0.833 5.833 8 C -0.133 4.133 9 C 0.094 3.906 10 H 0.087 0.913 11 O -0.409 6.409 12 C 0.078 3.922 13 C 0.049 3.951 14 O -0.401 6.401 15 C 0.195 3.805 16 C -0.627 4.627 17 H 0.051 0.949 18 C -0.028 4.028 19 N -0.927 5.927 20 Si 1.129 2.871 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.269 1.269 24 C -0.103 4.103 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.028 0.972 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.341 0.659 34 H 0.353 0.647 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.070 0.930 41 H -0.021 1.021 42 H -0.013 1.013 43 H 0.256 0.744 44 H 0.046 0.954 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 17.183 -17.982 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.047 4.047 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.009 4.009 6 H 0.061 0.939 7 N -0.365 5.365 8 C -0.172 4.172 9 C 0.037 3.963 10 H 0.105 0.895 11 O -0.329 6.329 12 C 0.001 3.999 13 C -0.028 4.028 14 O -0.320 6.320 15 C 0.120 3.880 16 C -0.664 4.664 17 H 0.069 0.931 18 C -0.225 4.225 19 N -0.563 5.563 20 Si 0.947 3.053 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.194 1.194 24 C -0.141 4.141 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.088 0.912 41 H -0.003 1.003 42 H 0.005 0.995 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.819 15.534 -16.901 24.967 hybrid contribution 0.164 1.477 -0.672 1.631 sum -9.655 17.011 -17.574 26.295 Atomic orbital electron populations 1.21889 0.94377 1.01468 1.02134 1.20337 0.94949 0.96666 0.92785 1.22337 1.04609 0.92644 1.00610 1.21702 0.93868 1.00461 0.98127 1.21122 0.95271 0.89545 0.94947 0.93901 1.59264 1.13919 1.12285 1.51035 1.22019 1.00269 0.99210 0.95671 1.22187 0.94624 0.96043 0.83423 0.89482 1.87997 1.36523 1.62660 1.45718 1.22525 0.85860 0.96830 0.94646 1.22726 0.99444 0.83226 0.97411 1.87893 1.89163 1.19509 1.35476 1.19984 0.91686 0.90542 0.85822 1.22272 1.51792 0.94392 0.97933 0.93051 1.27665 0.92140 1.09538 0.93205 1.70922 1.47218 1.22193 1.15977 0.82820 0.77994 0.68809 0.75644 1.19000 1.19800 1.19397 1.21627 0.93367 1.00204 0.98863 0.92887 0.91389 0.93366 0.87773 0.92431 0.95341 0.92324 0.90116 0.84535 0.83268 0.92728 0.93108 0.88954 0.92810 0.93984 0.91195 1.00306 0.99523 0.93517 0.93528 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.44 71.98 0.61 -1.67 16 2 C -0.05 -0.84 0.77 -52.18 -0.04 -0.88 16 3 C -0.14 -2.29 7.05 71.98 0.51 -1.78 16 4 C -0.10 -1.68 4.50 30.59 0.14 -1.54 16 5 C 0.10 1.72 3.57 44.92 0.16 1.88 16 6 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 7 N -0.83 -10.08 4.93 -168.69 -0.83 -10.92 16 8 C -0.13 -3.30 5.22 30.59 0.16 -3.14 16 9 C 0.09 2.48 2.27 30.59 0.07 2.55 16 10 H 0.09 2.02 5.54 -2.39 -0.01 2.01 16 11 O -0.41 -14.59 9.95 -144.34 -1.44 -16.02 16 12 C 0.08 2.48 6.13 71.99 0.44 2.92 16 13 C 0.05 1.94 6.32 71.99 0.45 2.39 16 14 O -0.40 -21.30 10.29 -144.34 -1.49 -22.79 16 15 C 0.19 11.49 5.00 71.24 0.36 11.85 16 16 C -0.63 -39.51 9.43 25.60 0.24 -39.26 16 17 H 0.05 3.25 7.81 -2.91 -0.02 3.23 16 18 C -0.03 -1.70 5.46 84.65 0.46 -1.24 16 19 N -0.93 -58.78 13.65 21.45 0.29 -58.48 16 20 Si 1.13 51.77 29.90 68.60 2.05 53.82 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C -0.10 -2.52 4.38 30.59 0.13 -2.39 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.10 1.75 3.69 -2.39 -0.01 1.74 16 29 H 0.06 0.74 7.72 -2.39 -0.02 0.72 16 30 H 0.03 0.47 8.10 -2.39 -0.02 0.45 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.34 3.76 9.04 -89.69 -0.81 2.95 16 34 H 0.35 2.94 8.53 -89.69 -0.77 2.17 16 35 H 0.05 1.41 7.87 -2.39 -0.02 1.39 16 36 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.09 2.23 8.08 -2.39 -0.02 2.21 16 38 H 0.05 1.68 7.87 -2.39 -0.02 1.66 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 41 H -0.02 -1.26 8.01 -2.38 -0.02 -1.28 16 42 H -0.01 -0.76 8.01 -2.39 -0.02 -0.78 16 43 H 0.26 16.36 7.22 -92.71 -0.67 15.69 16 44 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -73.52 345.66 1.77 -71.76 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -0.52 Total: 12.94 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 3.69 Total: -30.30 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -0.54 Total: -69.40 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -2.92 Total: -38.81 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 2.05 Total: 53.82 kcal Total: -73.52 1.77 -71.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703743392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.981 kcal (2) G-P(sol) polarization free energy of solvation -73.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds