Wall clock time and date at job start Mon Mar 30 2020 04:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99963 * 2 1 4 4 C 1.50702 * 110.36526 * 58.16733 * 3 2 1 5 5 O 1.20828 * 119.99614 * 217.80288 * 4 3 2 6 6 O 1.34225 * 120.00703 * 37.80441 * 4 3 2 7 7 C 1.54258 * 110.32270 * 180.34416 * 3 2 1 8 8 C 1.54389 * 105.05612 * 118.89727 * 7 3 2 9 9 N 1.48555 * 104.59505 * 336.14747 * 8 7 3 10 10 C 1.46896 * 111.00243 * 159.04166 * 9 8 7 11 11 C 1.52993 * 109.47279 * 69.87217 * 10 9 8 12 12 C 1.53002 * 109.47387 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47064 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46772 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99929 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99616 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00074 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47074 * 89.99941 * 18 16 14 20 20 H 1.48500 * 109.47130 * 209.99679 * 18 16 14 21 21 H 1.48505 * 109.47110 * 330.00204 * 18 16 14 22 22 C 1.48567 * 104.22293 * 39.48489 * 9 8 7 23 23 H 1.09000 * 109.47099 * 66.86907 * 1 2 3 24 24 H 1.09000 * 109.47097 * 186.87033 * 1 2 3 25 25 H 1.09005 * 109.47659 * 306.86840 * 1 2 3 26 26 H 0.96695 * 117.00604 * 179.97438 * 6 4 3 27 27 H 1.09001 * 110.32562 * 0.02562 * 7 3 2 28 28 H 1.08989 * 110.32703 * 237.78960 * 7 3 2 29 29 H 1.08996 * 110.41018 * 217.37208 * 8 7 3 30 30 H 1.08999 * 110.51097 * 94.97950 * 8 7 3 31 31 H 1.09001 * 109.46944 * 309.87452 * 10 9 8 32 32 H 1.09001 * 109.47754 * 189.87533 * 10 9 8 33 33 H 1.09005 * 109.47433 * 60.00310 * 11 10 9 34 34 H 1.09003 * 109.47496 * 300.00746 * 11 10 9 35 35 H 1.09001 * 109.47148 * 60.00043 * 12 11 10 36 36 H 1.08995 * 109.47062 * 300.00007 * 12 11 10 37 37 H 1.08995 * 109.47205 * 299.99941 * 13 12 11 38 38 H 1.08997 * 109.47089 * 60.00536 * 13 12 11 39 39 H 0.97005 * 119.99472 * 180.02562 * 17 16 14 40 40 H 1.08998 * 110.41211 * 79.29358 * 22 9 8 41 41 H 1.09003 * 110.41238 * 201.73834 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5428 2.0877 1.2003 5 8 1.3115 3.2692 1.0987 6 8 1.3834 1.4719 2.3823 7 6 3.5496 1.2065 -0.0087 8 6 3.9889 1.9030 -1.3147 9 7 2.8031 1.8115 -2.2048 10 6 2.8621 2.8252 -3.2663 11 6 3.9791 2.4698 -4.2495 12 6 4.0410 3.5260 -5.3547 13 6 5.1585 3.1708 -6.3376 14 6 5.2199 4.2115 -7.4258 15 1 4.5304 5.0428 -7.4175 16 6 6.1554 4.1018 -8.4327 17 7 6.9946 3.0892 -8.4430 18 14 6.2310 5.3913 -9.7820 19 1 7.1590 6.4777 -9.3770 20 1 6.7189 4.7661 -11.0375 21 1 4.8754 5.9555 -10.0041 22 6 1.6488 2.0533 -1.3013 23 1 -0.3633 0.4037 -0.9451 24 1 -0.3633 -1.0203 0.1229 25 1 -0.3634 0.6166 0.8222 26 1 1.0821 2.0152 3.1233 27 1 3.8619 0.1622 -0.0134 28 1 3.9671 1.7238 0.8550 29 1 4.8373 1.3810 -1.7570 30 1 4.2421 2.9460 -1.1248 31 1 3.0632 3.8016 -2.8254 32 1 1.9090 2.8545 -3.7944 33 1 3.7780 1.4934 -4.6904 34 1 4.9323 2.4405 -3.7215 35 1 4.2423 4.5022 -4.9135 36 1 3.0880 3.5555 -5.8828 37 1 6.1114 3.1416 -5.8092 38 1 4.9576 2.1946 -6.7788 39 1 7.6530 3.0122 -9.1512 40 1 1.5346 3.1199 -1.1076 41 1 0.7355 1.6446 -1.7335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703776724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:21 Heat of formation + Delta-G solvation = -140.869829 kcal Electronic energy + Delta-G solvation = -21072.316063 eV Core-core repulsion = 17759.047757 eV Total energy + Delta-G solvation = -3313.268305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37364 -39.11420 -37.35949 -36.53992 -34.72605 -32.77398 -31.24217 -29.11493 -28.22934 -26.90627 -25.04315 -23.70707 -22.37783 -20.72772 -20.54565 -19.86195 -18.79492 -17.86510 -16.77858 -16.20386 -15.91793 -15.71588 -15.08349 -15.01889 -14.57455 -14.43762 -14.34359 -13.67418 -13.22186 -12.92954 -12.58891 -12.35161 -12.25730 -11.99692 -11.87831 -11.71110 -11.57797 -11.45106 -11.29514 -10.96230 -10.88359 -10.48655 -10.47017 -10.35730 -10.06649 -9.59795 -9.23851 -8.98364 -8.55413 -8.30500 -5.95721 -3.97798 1.62276 2.40290 3.20740 3.34222 3.40274 3.43878 3.90275 4.09145 4.20131 4.49582 4.67329 4.89030 4.91616 4.98041 5.07388 5.22131 5.25344 5.32197 5.39811 5.43539 5.49280 5.55789 5.72872 5.82714 5.89221 5.98517 6.11964 6.21958 6.45250 6.59106 6.75253 6.84122 6.94808 7.01760 7.23302 7.40634 7.73530 7.89570 8.05598 8.48390 9.09739 9.65933 11.15644 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.044536 B = 0.002845 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.554187 B = 9838.640929 C = 9916.547725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.344 6.344 3 C 0.127 3.873 4 C 0.463 3.537 5 O -0.504 6.504 6 O -0.503 6.503 7 C -0.106 4.106 8 C 0.030 3.970 9 N -0.499 5.499 10 C 0.044 3.956 11 C -0.111 4.111 12 C -0.110 4.110 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.013 3.987 23 H 0.051 0.949 24 H 0.096 0.904 25 H 0.040 0.960 26 H 0.408 0.592 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.281 -5.427 22.146 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.262 6.262 3 C 0.085 3.915 4 C 0.303 3.697 5 O -0.391 6.391 6 O -0.315 6.315 7 C -0.143 4.143 8 C -0.098 4.098 9 N -0.223 5.223 10 C -0.083 4.083 11 C -0.149 4.149 12 C -0.148 4.148 13 C -0.015 4.015 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.116 4.116 23 H 0.070 0.930 24 H 0.115 0.885 25 H 0.059 0.941 26 H 0.266 0.734 27 H 0.123 0.877 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.999 -6.103 21.401 25.283 hybrid contribution -0.312 2.132 0.154 2.160 sum -12.311 -3.971 21.555 25.139 Atomic orbital electron populations 1.22942 0.80712 1.03600 1.00293 1.88113 1.20040 1.23885 1.94192 1.22182 0.96645 0.83777 0.88871 1.24290 0.73573 0.86918 0.84896 1.90747 1.46201 1.17099 1.85066 1.84650 1.79642 1.46865 1.20309 1.22398 0.88825 1.04361 0.98755 1.23225 0.95392 0.99736 0.91406 1.65504 1.00920 1.46966 1.08909 1.22464 1.01102 0.91971 0.92788 1.21618 0.96498 1.00706 0.96083 1.21608 1.00755 0.96557 0.95870 1.19083 0.92701 0.96769 0.92987 1.21297 1.16554 1.09212 1.08774 0.92791 1.25033 0.95740 0.95684 0.98084 1.69972 1.19948 1.29992 1.33643 0.86614 0.78249 0.81716 0.81535 1.20721 1.21233 1.19908 1.23686 0.97133 1.00033 0.90725 0.93046 0.88528 0.94134 0.73359 0.87684 0.89992 0.88396 0.92983 0.94482 0.90689 0.91500 0.92541 0.93679 0.93433 0.96729 0.96571 0.93060 0.90825 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.40 101.05 1.05 1.22 16 2 O -0.34 -3.74 10.18 -46.77 -0.48 -4.22 16 3 C 0.13 1.37 1.06 -90.39 -0.10 1.28 16 4 C 0.46 4.78 5.68 36.01 0.20 4.99 16 5 O -0.50 -6.44 16.29 -18.75 -0.31 -6.75 16 6 O -0.50 -3.85 12.75 -43.87 -0.56 -4.41 16 7 C -0.11 -1.06 6.45 -25.35 -0.16 -1.22 16 8 C 0.03 0.35 5.74 -2.18 -0.01 0.34 16 9 N -0.50 -6.61 5.37 -229.97 -1.24 -7.85 16 10 C 0.04 0.64 4.81 -3.83 -0.02 0.62 16 11 C -0.11 -1.91 5.27 -26.73 -0.14 -2.05 16 12 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 22 C 0.01 0.15 5.50 -2.18 -0.01 0.14 16 23 H 0.05 0.39 6.48 -51.93 -0.34 0.06 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.30 6.58 -51.93 -0.34 -0.04 16 26 H 0.41 1.28 9.10 45.56 0.41 1.69 16 27 H 0.10 1.01 7.98 -51.93 -0.41 0.59 16 28 H 0.08 0.71 7.70 -51.94 -0.40 0.31 16 29 H 0.10 1.13 7.76 -51.93 -0.40 0.73 16 30 H 0.05 0.61 7.82 -51.93 -0.41 0.20 16 31 H 0.04 0.53 7.88 -51.93 -0.41 0.12 16 32 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.96 7.26 -51.93 -0.38 0.59 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.07 0.92 6.65 -51.93 -0.35 0.58 16 41 H 0.10 1.05 6.16 -51.93 -0.32 0.73 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -33.64 332.75 -7.56 -41.20 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.84 Total: -2.77 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 0.13 Total: -10.51 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.50 Total: -34.50 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -1.34 Total: -15.38 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.64 -7.56 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703776724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.668 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds