Wall clock time and date at job start Mon Mar 30 2020 04:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99963 * 2 1 4 4 C 1.50702 * 110.36526 * 58.16733 * 3 2 1 5 5 O 1.20828 * 119.99614 * 217.80288 * 4 3 2 6 6 O 1.34225 * 120.00703 * 37.80441 * 4 3 2 7 7 C 1.54258 * 110.32270 * 180.34416 * 3 2 1 8 8 C 1.54389 * 105.05612 * 118.89727 * 7 3 2 9 9 N 1.48555 * 104.59505 * 336.14747 * 8 7 3 10 10 C 1.46896 * 111.00243 * 159.04166 * 9 8 7 11 11 C 1.52993 * 109.47279 * 69.87217 * 10 9 8 12 12 C 1.53002 * 109.47387 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47064 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46772 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99929 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99616 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00074 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47074 * 89.99941 * 18 16 14 20 20 H 1.48500 * 109.47130 * 209.99679 * 18 16 14 21 21 H 1.48505 * 109.47110 * 330.00204 * 18 16 14 22 22 C 1.48567 * 104.22293 * 39.48489 * 9 8 7 23 23 H 1.09000 * 109.47099 * 66.86907 * 1 2 3 24 24 H 1.09000 * 109.47097 * 186.87033 * 1 2 3 25 25 H 1.09005 * 109.47659 * 306.86840 * 1 2 3 26 26 H 0.96695 * 117.00604 * 179.97438 * 6 4 3 27 27 H 1.09001 * 110.32562 * 0.02562 * 7 3 2 28 28 H 1.08989 * 110.32703 * 237.78960 * 7 3 2 29 29 H 1.08996 * 110.41018 * 217.37208 * 8 7 3 30 30 H 1.08999 * 110.51097 * 94.97950 * 8 7 3 31 31 H 1.09001 * 109.46944 * 309.87452 * 10 9 8 32 32 H 1.09001 * 109.47754 * 189.87533 * 10 9 8 33 33 H 1.09005 * 109.47433 * 60.00310 * 11 10 9 34 34 H 1.09003 * 109.47496 * 300.00746 * 11 10 9 35 35 H 1.09001 * 109.47148 * 60.00043 * 12 11 10 36 36 H 1.08995 * 109.47062 * 300.00007 * 12 11 10 37 37 H 1.08995 * 109.47205 * 299.99941 * 13 12 11 38 38 H 1.08997 * 109.47089 * 60.00536 * 13 12 11 39 39 H 0.97005 * 119.99472 * 180.02562 * 17 16 14 40 40 H 1.08998 * 110.41211 * 79.29358 * 22 9 8 41 41 H 1.09003 * 110.41238 * 201.73834 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5428 2.0877 1.2003 5 8 1.3115 3.2692 1.0987 6 8 1.3834 1.4719 2.3823 7 6 3.5496 1.2065 -0.0087 8 6 3.9889 1.9030 -1.3147 9 7 2.8031 1.8115 -2.2048 10 6 2.8621 2.8252 -3.2663 11 6 3.9791 2.4698 -4.2495 12 6 4.0410 3.5260 -5.3547 13 6 5.1585 3.1708 -6.3376 14 6 5.2199 4.2115 -7.4258 15 1 4.5304 5.0428 -7.4175 16 6 6.1554 4.1018 -8.4327 17 7 6.9946 3.0892 -8.4430 18 14 6.2310 5.3913 -9.7820 19 1 7.1590 6.4777 -9.3770 20 1 6.7189 4.7661 -11.0375 21 1 4.8754 5.9555 -10.0041 22 6 1.6488 2.0533 -1.3013 23 1 -0.3633 0.4037 -0.9451 24 1 -0.3633 -1.0203 0.1229 25 1 -0.3634 0.6166 0.8222 26 1 1.0821 2.0152 3.1233 27 1 3.8619 0.1622 -0.0134 28 1 3.9671 1.7238 0.8550 29 1 4.8373 1.3810 -1.7570 30 1 4.2421 2.9460 -1.1248 31 1 3.0632 3.8016 -2.8254 32 1 1.9090 2.8545 -3.7944 33 1 3.7780 1.4934 -4.6904 34 1 4.9323 2.4405 -3.7215 35 1 4.2423 4.5022 -4.9135 36 1 3.0880 3.5555 -5.8828 37 1 6.1114 3.1416 -5.8092 38 1 4.9576 2.1946 -6.7788 39 1 7.6530 3.0122 -9.1512 40 1 1.5346 3.1199 -1.1076 41 1 0.7355 1.6446 -1.7335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703776724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:20 Heat of formation + Delta-G solvation = -165.179697 kcal Electronic energy + Delta-G solvation = -21073.370218 eV Core-core repulsion = 17759.047757 eV Total energy + Delta-G solvation = -3314.322460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.17682 -39.97153 -38.26371 -37.31224 -36.36309 -34.56879 -32.63459 -30.13784 -29.65296 -27.70226 -26.56333 -24.83237 -23.67976 -22.10809 -21.65834 -21.10365 -19.55377 -18.64591 -18.40406 -17.64616 -16.78961 -16.63405 -16.48137 -16.24225 -15.80486 -15.48136 -15.32267 -14.82429 -14.52085 -14.09231 -13.85999 -13.82178 -13.47235 -13.03615 -12.99910 -12.79575 -12.74473 -12.69699 -12.51659 -12.32354 -12.25712 -12.16897 -11.92878 -11.67538 -11.32554 -11.28962 -11.04484 -10.78600 -10.54417 -9.57710 -8.19083 -6.30384 0.84030 1.39939 1.41579 1.52790 1.69821 2.41502 2.46921 2.95039 3.13662 3.20385 3.37128 3.99188 4.04820 4.08165 4.16253 4.18173 4.33000 4.37616 4.40984 4.53162 4.56607 4.58633 4.68485 4.75253 4.82286 4.88210 4.90510 4.99859 5.21148 5.27884 5.34479 5.36320 5.55872 5.65952 5.79479 5.87537 5.90317 5.95142 6.27063 6.78638 6.87231 7.38825 8.92824 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.044536 B = 0.002845 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.554187 B = 9838.640929 C = 9916.547725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.358 6.358 3 C 0.126 3.874 4 C 0.473 3.527 5 O -0.532 6.532 6 O -0.497 6.497 7 C -0.102 4.102 8 C 0.026 3.974 9 N -0.510 5.510 10 C 0.054 3.946 11 C -0.100 4.100 12 C -0.098 4.098 13 C 0.024 3.976 14 C -0.545 4.545 15 H 0.059 0.941 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.014 3.986 23 H 0.053 0.947 24 H 0.114 0.886 25 H 0.046 0.954 26 H 0.429 0.571 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.051 0.949 37 H -0.010 1.010 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.066 0.934 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 -4.923 22.968 26.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.276 6.276 3 C 0.083 3.917 4 C 0.314 3.686 5 O -0.422 6.422 6 O -0.310 6.310 7 C -0.139 4.139 8 C -0.102 4.102 9 N -0.234 5.234 10 C -0.074 4.074 11 C -0.138 4.138 12 C -0.136 4.136 13 C -0.013 4.013 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.114 4.114 23 H 0.072 0.928 24 H 0.132 0.868 25 H 0.064 0.936 26 H 0.291 0.709 27 H 0.128 0.872 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.999 -5.607 22.262 26.382 hybrid contribution -0.019 1.903 -0.038 1.903 sum -13.018 -3.704 22.224 26.021 Atomic orbital electron populations 1.23136 0.79438 1.04953 1.00659 1.88098 1.21499 1.23750 1.94253 1.22109 0.96995 0.83830 0.88725 1.24069 0.72870 0.86224 0.85402 1.90745 1.47648 1.18211 1.85597 1.84596 1.79120 1.47021 1.20267 1.22397 0.88557 1.04645 0.98329 1.23282 0.94892 0.99951 0.92048 1.65442 1.02136 1.46399 1.09433 1.22248 0.99967 0.92419 0.92724 1.21419 0.97798 0.98941 0.95598 1.21412 0.98613 0.97813 0.95729 1.19006 0.93561 0.95131 0.93607 1.21754 1.16897 1.09906 1.09752 0.92247 1.26012 0.95187 0.97996 1.00815 1.70106 1.20640 1.31978 1.34716 0.85442 0.78815 0.78747 0.78012 1.19737 1.20668 1.18728 1.23667 0.96743 0.99853 0.91159 0.92837 0.86771 0.93585 0.70907 0.87201 0.88475 0.88639 0.93046 0.94176 0.90138 0.92400 0.92673 0.93204 0.92995 0.99171 0.99170 0.92772 0.91566 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 10.40 113.37 1.18 1.38 16 2 O -0.36 -7.16 10.18 -137.95 -1.40 -8.56 16 3 C 0.13 2.52 1.06 -10.65 -0.01 2.51 16 4 C 0.47 8.94 5.68 71.24 0.40 9.35 16 5 O -0.53 -12.91 16.29 21.96 0.36 -12.56 16 6 O -0.50 -6.41 12.75 -46.94 -0.60 -7.01 16 7 C -0.10 -1.89 6.45 31.49 0.20 -1.69 16 8 C 0.03 0.59 5.74 86.45 0.50 1.08 16 9 N -0.51 -13.07 5.37 -881.50 -4.73 -17.80 16 10 C 0.05 1.53 4.81 86.30 0.41 1.94 16 11 C -0.10 -3.43 5.27 30.59 0.16 -3.27 16 12 C -0.10 -4.07 5.15 30.60 0.16 -3.91 16 13 C 0.02 1.30 4.97 29.85 0.15 1.45 16 14 C -0.55 -31.82 9.11 25.60 0.23 -31.59 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 17 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 18 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.01 0.31 5.50 86.45 0.48 0.79 16 23 H 0.05 0.74 6.48 -2.39 -0.02 0.72 16 24 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 0.60 6.58 -2.38 -0.02 0.59 16 26 H 0.43 1.58 9.10 -74.06 -0.67 0.91 16 27 H 0.11 1.94 7.98 -2.39 -0.02 1.92 16 28 H 0.10 1.50 7.70 -2.39 -0.02 1.48 16 29 H 0.10 2.17 7.76 -2.39 -0.02 2.15 16 30 H 0.05 1.16 7.82 -2.39 -0.02 1.14 16 31 H 0.04 1.11 7.88 -2.39 -0.02 1.09 16 32 H 0.08 2.17 8.13 -2.39 -0.02 2.15 16 33 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.05 1.90 7.26 -2.39 -0.02 1.88 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.26 15.31 8.31 -92.70 -0.77 14.53 16 40 H 0.07 1.60 6.65 -2.39 -0.02 1.59 16 41 H 0.10 2.11 6.16 -2.39 -0.01 2.09 16 Total: -1.00 -71.81 332.75 0.60 -71.21 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 0.35 Total: 7.10 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 4.33 Total: -21.66 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -4.45 Total: -75.51 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -1.65 Total: -28.13 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.81 0.60 -71.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703776724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.972 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds