Wall clock time and date at job start Mon Mar 30 2020 05:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47404 * 2 1 4 4 C 1.53004 * 109.47207 * 239.99788 * 2 1 3 5 5 O 1.42899 * 109.52107 * 59.87858 * 4 2 1 6 6 C 1.53115 * 109.52578 * 299.68335 * 4 2 1 7 7 C 1.53034 * 109.28035 * 182.43688 * 6 4 2 8 8 N 1.46845 * 109.52203 * 59.18350 * 7 6 4 9 9 C 1.46897 * 111.00323 * 174.15936 * 8 7 6 10 10 C 1.52993 * 109.47651 * 199.92989 * 9 8 7 11 11 O 1.42901 * 109.47156 * 64.58347 * 10 9 8 12 12 C 1.42900 * 113.99908 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47030 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99660 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00061 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00111 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00108 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47134 * 60.00037 * 17 15 13 19 19 H 1.48497 * 109.47395 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47419 * 300.00202 * 17 15 13 21 21 C 1.46847 * 111.19628 * 298.25658 * 8 7 6 22 22 C 1.53034 * 109.52250 * 61.74447 * 21 8 7 23 23 H 1.08992 * 109.47122 * 300.00125 * 1 2 3 24 24 H 1.09000 * 109.47008 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46743 * 60.00127 * 1 2 3 26 26 H 1.09003 * 109.47206 * 120.00385 * 2 1 3 27 27 H 1.09002 * 109.47126 * 59.99837 * 3 2 1 28 28 H 1.09007 * 109.47262 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47067 * 299.99674 * 3 2 1 30 30 H 0.96699 * 114.00177 * 180.02562 * 5 4 2 31 31 H 1.08994 * 109.50529 * 302.38319 * 6 4 2 32 32 H 1.09007 * 109.50269 * 62.49658 * 6 4 2 33 33 H 1.09001 * 109.46274 * 299.16729 * 7 6 4 34 34 H 1.09002 * 109.46003 * 179.19432 * 7 6 4 35 35 H 1.09000 * 109.47316 * 319.93458 * 9 8 7 36 36 H 1.09001 * 109.46991 * 79.92914 * 9 8 7 37 37 H 1.08999 * 109.47493 * 184.58973 * 10 9 8 38 38 H 1.09003 * 109.47141 * 304.58591 * 10 9 8 39 39 H 1.09003 * 109.47157 * 299.99711 * 12 11 10 40 40 H 1.08991 * 109.47419 * 59.99960 * 12 11 10 41 41 H 0.97002 * 120.00262 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.46642 * 301.72452 * 21 8 7 43 43 H 1.09005 * 109.45050 * 181.75279 * 21 8 7 44 44 H 1.09004 * 109.50533 * 180.87789 * 22 21 8 45 45 H 1.08998 * 109.50927 * 60.76190 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5620 -0.0502 -2.4168 6 6 1.5369 -2.1674 -1.2465 7 6 2.0998 -2.9006 -2.4661 8 7 3.5673 -2.8741 -2.4205 9 6 4.1424 -3.6864 -3.5009 10 6 5.5878 -4.0479 -3.1533 11 8 5.6045 -4.8812 -1.9925 12 6 6.9141 -5.2776 -1.5804 13 6 6.8128 -6.1490 -0.3550 14 1 5.8451 -6.3768 0.0671 15 6 7.9554 -6.6553 0.2273 16 7 9.1338 -6.3774 -0.2864 17 14 7.8299 -7.7347 1.7466 18 1 7.0232 -8.9410 1.4315 19 1 9.1908 -8.1468 2.1748 20 1 7.1760 -6.9741 2.8417 21 6 4.0752 -1.4971 -2.4700 22 6 3.5713 -0.7221 -1.2504 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.8473 -0.4546 -3.2475 31 1 1.8692 -2.6666 -0.3364 32 1 0.4477 -2.1738 -1.2887 33 1 1.7557 -2.4090 -3.3761 34 1 1.7549 -3.9346 -2.4593 35 1 3.5582 -4.5990 -3.6198 36 1 4.1235 -3.1192 -4.4315 37 1 6.0404 -4.5806 -3.9896 38 1 6.1524 -3.1369 -2.9546 39 1 7.3944 -5.8358 -2.3840 40 1 7.5058 -4.3920 -1.3490 41 1 9.9377 -6.7332 0.1234 42 1 3.7219 -1.0121 -3.3800 43 1 5.1651 -1.5119 -2.4659 44 1 3.9356 0.3043 -1.2954 45 1 3.9356 -1.1985 -0.3403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710626018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:29 Heat of formation + Delta-G solvation = -110.604451 kcal Electronic energy + Delta-G solvation = -22065.703627 eV Core-core repulsion = 18889.580821 eV Total energy + Delta-G solvation = -3176.122806 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24571 -37.30494 -35.90306 -34.27928 -32.73365 -31.56135 -31.10498 -28.47833 -27.26514 -26.66388 -24.27086 -23.01834 -22.25631 -21.29721 -20.26599 -19.58783 -17.32272 -16.36482 -15.82948 -15.61370 -15.09356 -14.81895 -14.62929 -14.40754 -14.22575 -14.12595 -13.80840 -13.40882 -12.94153 -12.88466 -12.35290 -12.20452 -12.09960 -11.72213 -11.66818 -11.51591 -11.37917 -11.33773 -11.07309 -10.87907 -10.85357 -10.79831 -10.69121 -10.43740 -10.08870 -9.90344 -9.64631 -9.04956 -8.74619 -8.11167 -8.05328 -6.06297 -4.07265 3.35137 3.37464 3.41713 3.94439 4.14884 4.38905 4.57309 4.57648 4.76530 4.87182 5.02589 5.13651 5.18750 5.23359 5.30103 5.34331 5.36753 5.53764 5.58423 5.60732 5.61567 5.74870 5.77259 5.82768 5.85576 5.86606 5.96659 6.03586 6.09505 6.10357 6.18007 6.23195 6.27428 6.31604 6.39407 7.15101 7.23847 7.26032 7.49187 7.55635 7.85155 8.22152 8.67726 9.07379 9.57452 11.05398 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.003953 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.966629 B = 7081.223543 C = 7653.355146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.145 4.145 4 C 0.139 3.861 5 O -0.558 6.558 6 C -0.143 4.143 7 C 0.055 3.945 8 N -0.523 5.523 9 C 0.061 3.939 10 C 0.069 3.931 11 O -0.380 6.380 12 C 0.195 3.805 13 C -0.511 4.511 14 H 0.066 0.934 15 C 0.056 3.944 16 N -0.901 5.901 17 Si 0.907 3.093 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.053 3.947 22 C -0.143 4.143 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.368 0.632 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.034 0.966 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.264 0.736 42 H 0.026 0.974 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.100 13.370 -4.505 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.202 4.202 4 C 0.098 3.902 5 O -0.365 6.365 6 C -0.181 4.181 7 C -0.073 4.073 8 N -0.248 5.248 9 C -0.067 4.067 10 C -0.009 4.009 11 O -0.299 6.299 12 C 0.120 3.880 13 C -0.549 4.549 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.540 5.540 17 Si 0.734 3.266 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.075 4.075 22 C -0.181 4.181 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.216 0.784 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.195 13.453 -3.481 20.591 hybrid contribution 0.513 -0.586 -0.585 0.974 sum -14.682 12.866 -4.067 19.941 Atomic orbital electron populations 1.21812 0.94918 1.01746 1.01696 1.21090 0.96327 0.96589 0.95842 1.21818 1.01014 0.95714 1.01683 1.21226 0.92305 0.90729 0.85895 1.86486 1.77066 1.57259 1.15671 1.22307 1.00418 0.95376 0.99953 1.22095 0.87878 1.00975 0.96304 1.61762 1.05739 1.10494 1.46804 1.22140 0.96473 0.97197 0.90841 1.22211 0.94402 0.94212 0.90097 1.87935 1.31717 1.67164 1.43109 1.20157 0.79111 0.94036 0.94653 1.21027 0.93474 1.29663 1.10720 0.91615 1.24939 0.94922 0.96742 0.97917 1.69957 0.97616 1.45503 1.40962 0.86412 0.76991 0.80601 0.82550 1.20053 1.21221 1.20030 1.22138 1.01036 0.88042 0.96273 1.22305 0.95464 1.00277 1.00015 0.93132 0.92628 0.92019 0.90138 0.93130 0.92540 0.92017 0.78360 0.89803 0.90785 0.95680 0.90262 0.90245 0.94217 0.94448 0.94753 0.98101 0.97975 0.92696 0.95623 0.90075 0.90740 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.70 37.16 0.32 -1.04 16 2 C -0.08 -0.82 2.34 -90.62 -0.21 -1.03 16 3 C -0.15 -1.41 8.70 37.16 0.32 -1.08 16 4 C 0.14 1.51 0.47 -90.50 -0.04 1.47 16 5 O -0.56 -6.04 11.60 -35.23 -0.41 -6.45 16 6 C -0.14 -1.61 4.69 -26.65 -0.12 -1.74 16 7 C 0.06 0.66 5.20 -3.84 -0.02 0.64 16 8 N -0.52 -7.60 4.53 -234.68 -1.06 -8.66 16 9 C 0.06 0.90 5.39 -3.83 -0.02 0.88 16 10 C 0.07 1.29 6.13 37.15 0.23 1.52 16 11 O -0.38 -9.34 10.27 -35.23 -0.36 -9.70 16 12 C 0.19 5.45 5.69 36.01 0.20 5.66 16 13 C -0.51 -15.31 9.43 -34.44 -0.32 -15.63 16 14 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 17 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.05 0.68 5.06 -3.84 -0.02 0.66 16 22 C -0.14 -1.71 4.68 -26.65 -0.12 -1.83 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.51 6.50 -51.93 -0.34 0.17 16 25 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.55 6.49 -51.92 -0.34 0.21 16 29 H 0.06 0.64 7.69 -51.93 -0.40 0.24 16 30 H 0.37 3.41 5.87 45.56 0.27 3.68 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.76 6.58 -51.93 -0.34 0.42 16 33 H 0.03 0.26 6.85 -51.93 -0.36 -0.09 16 34 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 35 H 0.08 1.18 7.79 -51.93 -0.40 0.77 16 36 H 0.04 0.49 8.00 -51.93 -0.42 0.07 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.63 6.71 -51.93 -0.35 0.28 16 39 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 40 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.03 0.28 6.85 -51.93 -0.36 -0.07 16 43 H 0.08 1.14 6.65 -51.93 -0.35 0.79 16 44 H 0.07 0.83 6.58 -51.93 -0.34 0.48 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -31.83 341.89 -8.32 -40.15 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.45 Total: -1.03 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.33 Total: -35.23 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.77 Total: -16.15 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.83 -8.32 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710626018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.453 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds