Wall clock time and date at job start Mon Mar 30 2020 05:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47404 * 2 1 4 4 C 1.53004 * 109.47207 * 239.99788 * 2 1 3 5 5 O 1.42899 * 109.52107 * 59.87858 * 4 2 1 6 6 C 1.53115 * 109.52578 * 299.68335 * 4 2 1 7 7 C 1.53034 * 109.28035 * 182.43688 * 6 4 2 8 8 N 1.46845 * 109.52203 * 59.18350 * 7 6 4 9 9 C 1.46897 * 111.00323 * 174.15936 * 8 7 6 10 10 C 1.52993 * 109.47651 * 199.92989 * 9 8 7 11 11 O 1.42901 * 109.47156 * 64.58347 * 10 9 8 12 12 C 1.42900 * 113.99908 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47030 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99660 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00061 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00111 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00108 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47134 * 60.00037 * 17 15 13 19 19 H 1.48497 * 109.47395 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47419 * 300.00202 * 17 15 13 21 21 C 1.46847 * 111.19628 * 298.25658 * 8 7 6 22 22 C 1.53034 * 109.52250 * 61.74447 * 21 8 7 23 23 H 1.08992 * 109.47122 * 300.00125 * 1 2 3 24 24 H 1.09000 * 109.47008 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46743 * 60.00127 * 1 2 3 26 26 H 1.09003 * 109.47206 * 120.00385 * 2 1 3 27 27 H 1.09002 * 109.47126 * 59.99837 * 3 2 1 28 28 H 1.09007 * 109.47262 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47067 * 299.99674 * 3 2 1 30 30 H 0.96699 * 114.00177 * 180.02562 * 5 4 2 31 31 H 1.08994 * 109.50529 * 302.38319 * 6 4 2 32 32 H 1.09007 * 109.50269 * 62.49658 * 6 4 2 33 33 H 1.09001 * 109.46274 * 299.16729 * 7 6 4 34 34 H 1.09002 * 109.46003 * 179.19432 * 7 6 4 35 35 H 1.09000 * 109.47316 * 319.93458 * 9 8 7 36 36 H 1.09001 * 109.46991 * 79.92914 * 9 8 7 37 37 H 1.08999 * 109.47493 * 184.58973 * 10 9 8 38 38 H 1.09003 * 109.47141 * 304.58591 * 10 9 8 39 39 H 1.09003 * 109.47157 * 299.99711 * 12 11 10 40 40 H 1.08991 * 109.47419 * 59.99960 * 12 11 10 41 41 H 0.97002 * 120.00262 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.46642 * 301.72452 * 21 8 7 43 43 H 1.09005 * 109.45050 * 181.75279 * 21 8 7 44 44 H 1.09004 * 109.50533 * 180.87789 * 22 21 8 45 45 H 1.08998 * 109.50927 * 60.76190 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5620 -0.0502 -2.4168 6 6 1.5369 -2.1674 -1.2465 7 6 2.0998 -2.9006 -2.4661 8 7 3.5673 -2.8741 -2.4205 9 6 4.1424 -3.6864 -3.5009 10 6 5.5878 -4.0479 -3.1533 11 8 5.6045 -4.8812 -1.9925 12 6 6.9141 -5.2776 -1.5804 13 6 6.8128 -6.1490 -0.3550 14 1 5.8451 -6.3768 0.0671 15 6 7.9554 -6.6553 0.2273 16 7 9.1338 -6.3774 -0.2864 17 14 7.8299 -7.7347 1.7466 18 1 7.0232 -8.9410 1.4315 19 1 9.1908 -8.1468 2.1748 20 1 7.1760 -6.9741 2.8417 21 6 4.0752 -1.4971 -2.4700 22 6 3.5713 -0.7221 -1.2504 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.8473 -0.4546 -3.2475 31 1 1.8692 -2.6666 -0.3364 32 1 0.4477 -2.1738 -1.2887 33 1 1.7557 -2.4090 -3.3761 34 1 1.7549 -3.9346 -2.4593 35 1 3.5582 -4.5990 -3.6198 36 1 4.1235 -3.1192 -4.4315 37 1 6.0404 -4.5806 -3.9896 38 1 6.1524 -3.1369 -2.9546 39 1 7.3944 -5.8358 -2.3840 40 1 7.5058 -4.3920 -1.3490 41 1 9.9377 -6.7332 0.1234 42 1 3.7219 -1.0121 -3.3800 43 1 5.1651 -1.5119 -2.4659 44 1 3.9356 0.3043 -1.2954 45 1 3.9356 -1.1985 -0.3403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710626018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:28 Heat of formation + Delta-G solvation = -133.187637 kcal Electronic energy + Delta-G solvation = -22066.682907 eV Core-core repulsion = 18889.580821 eV Total energy + Delta-G solvation = -3177.102086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18654 -38.78942 -37.31899 -35.10648 -34.90714 -32.73804 -32.06432 -30.03547 -28.54405 -28.03759 -25.35174 -24.45916 -23.97658 -22.54995 -21.19210 -20.49267 -18.61037 -18.25710 -17.39880 -17.05550 -16.47339 -16.09749 -15.85527 -15.53222 -15.50003 -15.19665 -15.02331 -14.83253 -14.24732 -13.79785 -13.71872 -13.45439 -13.21060 -13.07294 -12.82783 -12.80876 -12.66901 -12.59105 -12.32033 -12.28225 -12.22493 -12.12621 -11.82115 -11.66941 -11.63404 -11.25966 -10.91398 -10.84446 -10.55150 -10.16337 -9.12171 -8.31063 -6.43209 1.39719 1.44758 1.53129 2.35608 2.88633 3.02541 3.26241 3.32978 3.69195 3.69400 3.83846 4.09265 4.21097 4.23084 4.24139 4.34523 4.41246 4.47942 4.50754 4.53755 4.64495 4.67106 4.81150 4.83428 4.89382 4.91701 4.95720 4.99355 5.01877 5.07699 5.08243 5.18441 5.19870 5.27976 5.31862 5.48066 5.55979 5.58801 5.98358 6.14731 6.24330 6.58318 6.78402 6.87734 7.29220 8.81207 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.003953 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.966629 B = 7081.223543 C = 7653.355146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.142 4.142 4 C 0.147 3.853 5 O -0.559 6.559 6 C -0.139 4.139 7 C 0.057 3.943 8 N -0.552 5.552 9 C 0.070 3.930 10 C 0.058 3.942 11 O -0.395 6.395 12 C 0.211 3.789 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.007 3.993 16 N -0.932 5.932 17 Si 0.982 3.018 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.266 1.266 21 C 0.054 3.946 22 C -0.139 4.139 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.376 0.624 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.034 0.966 39 H -0.017 1.017 40 H -0.020 1.020 41 H 0.270 0.730 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.463 13.626 -4.380 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.199 4.199 4 C 0.106 3.894 5 O -0.367 6.367 6 C -0.177 4.177 7 C -0.070 4.070 8 N -0.278 5.278 9 C -0.057 4.057 10 C -0.019 4.019 11 O -0.314 6.314 12 C 0.135 3.865 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.805 3.195 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.191 1.191 21 C -0.073 4.073 22 C -0.177 4.177 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.226 0.774 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.000 1.000 40 H -0.002 1.002 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.573 13.724 -3.383 21.782 hybrid contribution 0.945 -0.601 -0.699 1.320 sum -15.628 13.123 -4.082 20.811 Atomic orbital electron populations 1.21769 0.94076 1.01935 1.01932 1.21131 0.97044 0.96778 0.95326 1.21782 1.00781 0.95364 1.01950 1.21098 0.91265 0.90578 0.86419 1.86489 1.76971 1.57317 1.15934 1.22271 1.01170 0.95364 0.98862 1.22108 0.86246 1.01106 0.97558 1.61666 1.07428 1.11412 1.47304 1.22039 0.93492 0.97913 0.92275 1.22589 0.97798 0.93291 0.88220 1.87890 1.29590 1.68313 1.45639 1.19760 0.80313 0.92614 0.93784 1.21354 0.93770 1.31195 1.12071 0.92195 1.25953 0.94169 0.97767 1.01271 1.70067 0.98472 1.46126 1.42476 0.85250 0.77701 0.78599 0.77955 1.18928 1.19896 1.19122 1.22115 0.99923 0.87625 0.97649 1.22265 0.96508 1.00301 0.98658 0.92166 0.92453 0.92493 0.90614 0.92119 0.92874 0.92466 0.77445 0.91776 0.89378 0.93232 0.90818 0.90262 0.90709 0.93665 0.94813 0.99955 1.00248 0.92072 0.93083 0.92014 0.89904 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.70 71.98 0.63 -1.77 16 2 C -0.08 -1.63 2.34 -10.79 -0.03 -1.65 16 3 C -0.14 -2.56 8.70 71.98 0.63 -1.94 16 4 C 0.15 3.01 0.47 -10.71 -0.01 3.00 16 5 O -0.56 -10.78 11.60 -148.98 -1.73 -12.51 16 6 C -0.14 -2.98 4.69 30.64 0.14 -2.83 16 7 C 0.06 1.27 5.20 86.32 0.45 1.72 16 8 N -0.55 -15.55 4.53 -896.38 -4.06 -19.61 16 9 C 0.07 1.99 5.39 86.30 0.47 2.46 16 10 C 0.06 2.20 6.13 71.98 0.44 2.64 16 11 O -0.39 -19.93 10.27 -148.98 -1.53 -21.46 16 12 C 0.21 12.23 5.69 71.24 0.41 12.63 16 13 C -0.55 -33.46 9.43 25.60 0.24 -33.22 16 14 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 15 C 0.01 0.39 5.46 84.65 0.46 0.85 16 16 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 17 Si 0.98 45.16 29.54 68.60 2.03 47.18 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 C 0.05 1.34 5.06 86.32 0.44 1.77 16 22 C -0.14 -3.27 4.68 30.65 0.14 -3.13 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.95 6.50 -2.39 -0.02 0.93 16 25 H 0.06 1.04 7.68 -2.39 -0.02 1.02 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.98 6.49 -2.38 -0.02 0.96 16 29 H 0.06 1.09 7.69 -2.39 -0.02 1.07 16 30 H 0.38 5.81 5.87 -74.06 -0.43 5.37 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.64 6.58 -2.38 -0.02 1.63 16 33 H 0.05 0.87 6.85 -2.39 -0.02 0.86 16 34 H 0.07 1.72 7.93 -2.39 -0.02 1.70 16 35 H 0.08 2.24 7.79 -2.39 -0.02 2.22 16 36 H 0.08 1.61 8.00 -2.39 -0.02 1.59 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.03 1.27 6.71 -2.39 -0.02 1.25 16 39 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 40 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 41 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.05 0.99 6.85 -2.38 -0.02 0.98 16 43 H 0.06 1.74 6.65 -2.38 -0.02 1.72 16 44 H 0.08 1.78 6.58 -2.38 -0.02 1.76 16 45 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.70 341.89 -0.08 -68.78 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.52 Total: 13.85 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.41 Total: -19.46 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -3.77 Total: -76.38 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -3.26 Total: -33.96 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.70 -0.08 -68.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710626018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.405 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds