Wall clock time and date at job start Mon Mar 30 2020 04:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00126 * 2 1 4 4 O 1.20833 * 119.99644 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00640 * 179.71955 * 3 2 1 6 6 C 1.53000 * 109.50431 * 300.28347 * 5 3 2 7 7 C 1.52992 * 109.47626 * 59.99388 * 6 5 3 8 8 O 1.42900 * 109.47275 * 180.02562 * 7 6 5 9 9 C 1.42899 * 113.99762 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47008 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99833 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99846 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99221 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00162 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.46997 * 89.99992 * 14 12 10 16 16 H 1.48507 * 109.46993 * 209.99633 * 14 12 10 17 17 H 1.48493 * 109.47371 * 330.00030 * 14 12 10 18 18 C 1.53116 * 109.50584 * 180.19754 * 5 3 2 19 19 C 1.53120 * 109.15995 * 182.40754 * 18 5 3 20 20 C 1.53044 * 109.27768 * 57.65482 * 19 18 5 21 21 N 1.46843 * 109.52418 * 300.81954 * 20 19 18 22 22 C 1.46848 * 111.23189 * 61.72263 * 21 20 19 23 23 H 1.08997 * 109.47488 * 299.99586 * 1 2 3 24 24 H 1.08997 * 109.47515 * 60.00401 * 1 2 3 25 25 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46821 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.46630 * 299.99145 * 6 5 3 28 28 H 1.08998 * 109.47140 * 300.00121 * 7 6 5 29 29 H 1.09002 * 109.47314 * 60.00176 * 7 6 5 30 30 H 1.09002 * 109.47163 * 299.99689 * 9 8 7 31 31 H 1.08996 * 109.47928 * 59.99741 * 9 8 7 32 32 H 0.97003 * 119.99466 * 179.97438 * 13 12 10 33 33 H 1.08995 * 109.52308 * 302.31023 * 18 5 3 34 34 H 1.09001 * 109.52417 * 62.44224 * 18 5 3 35 35 H 1.09003 * 109.50213 * 177.59698 * 19 18 5 36 36 H 1.09002 * 109.50766 * 297.71384 * 19 18 5 37 37 H 1.08994 * 109.46067 * 60.83912 * 20 19 18 38 38 H 1.09003 * 109.45959 * 180.79825 * 20 19 18 39 39 H 1.00896 * 111.00354 * 185.84104 * 21 20 19 40 40 H 1.08996 * 109.49684 * 178.28426 * 22 21 20 41 41 H 1.08998 * 109.42617 * 58.31409 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0064 6 6 4.1090 0.5783 1.2557 7 6 3.6758 -0.8890 1.2504 8 8 4.1823 -1.5395 2.4176 9 6 3.8330 -2.9221 2.5101 10 6 4.4167 -3.5042 3.7718 11 1 4.9960 -2.8806 4.4366 12 6 4.2102 -4.8327 4.0778 13 7 4.7191 -5.3405 5.1790 14 14 3.2076 -5.9110 2.9283 15 1 4.1076 -6.5383 1.9275 16 1 2.5252 -6.9709 3.7134 17 1 2.1931 -5.0812 2.2303 18 6 4.0011 2.7431 0.0100 19 6 5.5297 2.8146 -0.0443 20 6 6.0257 2.0822 -1.2932 21 7 5.5846 0.6823 -1.2489 22 6 4.1192 0.5864 -1.2435 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 5.1976 0.6354 1.2595 27 1 3.7160 1.0700 2.1456 28 1 2.5873 -0.9464 1.2464 29 1 4.0688 -1.3807 0.3605 30 1 2.7478 -3.0220 2.5316 31 1 4.2300 -3.4558 1.6467 32 1 4.5736 -6.2750 5.3945 33 1 3.5817 3.2494 -0.8594 34 1 3.6450 3.2263 0.9199 35 1 5.8440 3.8575 -0.0850 36 1 5.9479 2.3424 0.8446 37 1 5.6182 2.5635 -2.1822 38 1 7.1146 2.1191 -1.3274 39 1 5.9786 0.1546 -2.0133 40 1 3.8234 -0.4626 -1.2411 41 1 3.7207 1.0740 -2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711630535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:24 Heat of formation + Delta-G solvation = -134.824045 kcal Electronic energy + Delta-G solvation = -22086.833986 eV Core-core repulsion = 18773.827846 eV Total energy + Delta-G solvation = -3313.006141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15401 -38.83640 -36.83704 -36.43107 -33.63134 -32.53561 -31.89987 -29.15386 -27.83983 -27.29502 -24.25915 -24.12539 -22.31018 -21.73118 -21.29268 -18.83037 -17.58602 -17.34411 -16.74656 -16.58607 -15.90629 -15.24318 -14.87278 -14.81740 -14.44888 -14.26823 -13.96778 -13.79715 -13.43519 -13.11055 -12.73043 -12.68792 -12.61474 -12.22355 -12.12791 -11.61327 -11.16473 -11.11925 -10.98844 -10.87120 -10.84221 -10.72439 -10.42156 -10.20180 -10.13960 -9.81462 -9.11535 -8.74154 -8.62242 -8.35811 -6.07471 -4.05764 2.09289 2.61224 3.27478 3.34053 3.36312 3.96980 4.31482 4.39296 4.48318 4.51910 4.81030 4.86211 4.98646 5.03646 5.11929 5.15000 5.24228 5.32332 5.42907 5.45654 5.47440 5.51880 5.66145 5.70356 5.80561 5.94133 5.96965 6.05524 6.20177 6.29110 6.41032 6.58840 6.71924 6.77124 7.08094 7.16081 7.65320 7.65731 8.11130 8.74128 9.04854 9.52462 11.05737 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.005064 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.270979 B = 5527.353559 C = 6282.300377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.345 6.345 3 C 0.472 3.528 4 O -0.509 6.509 5 C -0.043 4.043 6 C -0.099 4.099 7 C 0.052 3.948 8 O -0.382 6.382 9 C 0.172 3.828 10 C -0.517 4.517 11 H 0.082 0.918 12 C 0.071 3.929 13 N -0.897 5.897 14 Si 0.875 3.125 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.266 1.266 18 C -0.098 4.098 19 C -0.121 4.121 20 C 0.056 3.944 21 N -0.680 5.680 22 C 0.069 3.931 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.001 0.999 31 H -0.002 1.002 32 H 0.266 0.734 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.029 0.971 38 H 0.078 0.922 39 H 0.350 0.650 40 H 0.093 0.907 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 14.576 -16.429 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.261 6.261 3 C 0.314 3.686 4 O -0.397 6.397 5 C -0.045 4.045 6 C -0.136 4.136 7 C -0.025 4.025 8 O -0.301 6.301 9 C 0.096 3.904 10 C -0.555 4.555 11 H 0.100 0.900 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.702 3.298 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.191 1.191 18 C -0.136 4.136 19 C -0.159 4.159 20 C -0.074 4.074 21 N -0.312 5.312 22 C -0.061 4.061 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.097 0.903 39 H 0.168 0.832 40 H 0.111 0.889 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.302 14.738 -15.499 21.641 hybrid contribution -1.207 -0.576 -1.662 2.133 sum -4.509 14.163 -17.161 22.703 Atomic orbital electron populations 1.23307 0.76762 1.03948 1.02329 1.86684 1.23186 1.32887 1.83348 1.23767 0.91729 0.81424 0.71662 1.90633 1.67134 1.36450 1.45479 1.20614 0.86218 0.98566 0.99058 1.21445 1.03599 0.94807 0.93787 1.22622 0.98089 0.92065 0.89760 1.87863 1.76118 1.25205 1.40955 1.20545 0.94436 0.78185 0.97201 1.20930 1.33661 0.95505 1.05411 0.89988 1.24766 0.95559 0.97404 0.95272 1.69884 1.45162 1.14208 1.24310 0.86856 0.81020 0.80674 0.81257 1.19925 1.20862 1.19059 1.21495 0.96186 0.92466 1.03459 1.21690 0.94636 1.00262 0.99287 1.21978 1.00298 0.88265 0.96826 1.60087 1.07637 1.11963 1.51514 1.21914 0.88606 1.01512 0.94024 0.91756 0.92121 0.87925 0.87969 0.91364 0.92764 0.93943 0.98119 0.98452 0.92440 0.91368 0.90585 0.90984 0.89968 0.95322 0.90320 0.83151 0.88871 0.94898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.74 7.40 -39.26 -0.29 -5.03 16 3 C 0.47 6.65 6.49 36.00 0.23 6.88 16 4 O -0.51 -7.97 15.73 -18.76 -0.29 -8.27 16 5 C -0.04 -0.54 0.51 -155.58 -0.08 -0.62 16 6 C -0.10 -1.50 4.19 -26.74 -0.11 -1.62 16 7 C 0.05 0.95 5.07 37.15 0.19 1.14 16 8 O -0.38 -9.21 10.33 -35.23 -0.36 -9.57 16 9 C 0.17 4.48 4.76 36.01 0.17 4.65 16 10 C -0.52 -15.66 9.99 -34.44 -0.34 -16.00 16 11 H 0.08 2.71 8.06 -52.49 -0.42 2.29 16 12 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 13 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 14 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 18 C -0.10 -1.09 4.09 -26.61 -0.11 -1.19 16 19 C -0.12 -1.13 5.74 -26.65 -0.15 -1.29 16 20 C 0.06 0.48 6.55 -3.83 -0.03 0.46 16 21 N -0.68 -6.90 6.13 -113.82 -0.70 -7.60 16 22 C 0.07 0.76 4.88 -3.83 -0.02 0.75 16 23 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 24 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 25 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.10 1.57 6.01 -51.93 -0.31 1.26 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.99 5.32 -51.93 -0.28 0.71 16 29 H 0.04 0.74 6.42 -51.93 -0.33 0.41 16 30 H 0.00 0.03 7.20 -51.93 -0.37 -0.34 16 31 H 0.00 -0.06 7.57 -51.93 -0.39 -0.45 16 32 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.86 6.58 -51.93 -0.34 0.52 16 37 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.35 2.90 8.90 -39.29 -0.35 2.55 16 40 H 0.09 1.09 6.39 -51.93 -0.33 0.76 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 322.11 15.07 4.85 4.85 Total: -1.00 -33.94 322.11 -6.49 -40.43 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.52 Total: -1.13 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 0.72 Total: -3.43 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.08 Total: -34.78 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.95 Total: -22.87 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.94 -6.49 -40.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711630535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.391 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds