Wall clock time and date at job start Mon Mar 30 2020 04:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00126 * 2 1 4 4 O 1.20833 * 119.99644 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00640 * 179.71955 * 3 2 1 6 6 C 1.53000 * 109.50431 * 300.28347 * 5 3 2 7 7 C 1.52992 * 109.47626 * 59.99388 * 6 5 3 8 8 O 1.42900 * 109.47275 * 180.02562 * 7 6 5 9 9 C 1.42899 * 113.99762 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47008 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99833 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99846 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99221 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00162 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.46997 * 89.99992 * 14 12 10 16 16 H 1.48507 * 109.46993 * 209.99633 * 14 12 10 17 17 H 1.48493 * 109.47371 * 330.00030 * 14 12 10 18 18 C 1.53116 * 109.50584 * 180.19754 * 5 3 2 19 19 C 1.53120 * 109.15995 * 182.40754 * 18 5 3 20 20 C 1.53044 * 109.27768 * 57.65482 * 19 18 5 21 21 N 1.46843 * 109.52418 * 300.81954 * 20 19 18 22 22 C 1.46848 * 111.23189 * 61.72263 * 21 20 19 23 23 H 1.08997 * 109.47488 * 299.99586 * 1 2 3 24 24 H 1.08997 * 109.47515 * 60.00401 * 1 2 3 25 25 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46821 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.46630 * 299.99145 * 6 5 3 28 28 H 1.08998 * 109.47140 * 300.00121 * 7 6 5 29 29 H 1.09002 * 109.47314 * 60.00176 * 7 6 5 30 30 H 1.09002 * 109.47163 * 299.99689 * 9 8 7 31 31 H 1.08996 * 109.47928 * 59.99741 * 9 8 7 32 32 H 0.97003 * 119.99466 * 179.97438 * 13 12 10 33 33 H 1.08995 * 109.52308 * 302.31023 * 18 5 3 34 34 H 1.09001 * 109.52417 * 62.44224 * 18 5 3 35 35 H 1.09003 * 109.50213 * 177.59698 * 19 18 5 36 36 H 1.09002 * 109.50766 * 297.71384 * 19 18 5 37 37 H 1.08994 * 109.46067 * 60.83912 * 20 19 18 38 38 H 1.09003 * 109.45959 * 180.79825 * 20 19 18 39 39 H 1.00896 * 111.00354 * 185.84104 * 21 20 19 40 40 H 1.08996 * 109.49684 * 178.28426 * 22 21 20 41 41 H 1.08998 * 109.42617 * 58.31409 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0064 6 6 4.1090 0.5783 1.2557 7 6 3.6758 -0.8890 1.2504 8 8 4.1823 -1.5395 2.4176 9 6 3.8330 -2.9221 2.5101 10 6 4.4167 -3.5042 3.7718 11 1 4.9960 -2.8806 4.4366 12 6 4.2102 -4.8327 4.0778 13 7 4.7191 -5.3405 5.1790 14 14 3.2076 -5.9110 2.9283 15 1 4.1076 -6.5383 1.9275 16 1 2.5252 -6.9709 3.7134 17 1 2.1931 -5.0812 2.2303 18 6 4.0011 2.7431 0.0100 19 6 5.5297 2.8146 -0.0443 20 6 6.0257 2.0822 -1.2932 21 7 5.5846 0.6823 -1.2489 22 6 4.1192 0.5864 -1.2435 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 5.1976 0.6354 1.2595 27 1 3.7160 1.0700 2.1456 28 1 2.5873 -0.9464 1.2464 29 1 4.0688 -1.3807 0.3605 30 1 2.7478 -3.0220 2.5316 31 1 4.2300 -3.4558 1.6467 32 1 4.5736 -6.2750 5.3945 33 1 3.5817 3.2494 -0.8594 34 1 3.6450 3.2263 0.9199 35 1 5.8440 3.8575 -0.0850 36 1 5.9479 2.3424 0.8446 37 1 5.6182 2.5635 -2.1822 38 1 7.1146 2.1191 -1.3274 39 1 5.9786 0.1546 -2.0133 40 1 3.8234 -0.4626 -1.2411 41 1 3.7207 1.0740 -2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711630535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:23 Heat of formation + Delta-G solvation = -159.349900 kcal Electronic energy + Delta-G solvation = -22087.897507 eV Core-core repulsion = 18773.827846 eV Total energy + Delta-G solvation = -3314.069661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.20072 -39.79466 -38.50608 -37.57734 -35.03233 -34.41056 -32.76167 -30.77556 -29.05243 -28.70406 -25.24636 -24.97631 -23.97446 -23.50940 -22.19139 -19.79744 -19.08467 -18.57821 -18.28751 -17.67016 -17.28348 -16.70251 -16.38232 -16.19484 -15.64406 -15.29575 -15.14488 -14.79812 -14.67873 -14.35796 -14.07746 -14.05281 -13.88172 -13.53032 -13.10299 -13.03141 -12.84705 -12.45289 -12.27076 -12.07877 -11.87766 -11.79852 -11.72525 -11.68769 -11.39487 -11.26914 -11.24217 -10.87426 -10.22435 -9.36548 -8.35466 -6.43360 1.00175 1.34752 1.38213 1.49363 1.64406 2.31620 2.94882 2.97192 3.26098 3.43054 3.59951 3.81513 4.00985 4.14901 4.16765 4.24118 4.29379 4.33719 4.39475 4.52469 4.56330 4.61041 4.65494 4.72902 4.74634 4.79613 4.87449 4.99322 5.03178 5.09110 5.15858 5.19897 5.33163 5.42952 5.47497 5.97313 6.02207 6.50642 6.59320 6.60558 6.79386 7.21361 8.81776 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.005064 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.270979 B = 5527.353559 C = 6282.300377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.356 6.356 3 C 0.471 3.529 4 O -0.529 6.529 5 C -0.039 4.039 6 C -0.089 4.089 7 C 0.048 3.952 8 O -0.409 6.409 9 C 0.183 3.817 10 C -0.547 4.547 11 H 0.029 0.971 12 C 0.013 3.987 13 N -0.943 5.943 14 Si 0.955 3.045 15 H -0.257 1.257 16 H -0.273 1.273 17 H -0.245 1.245 18 C -0.096 4.096 19 C -0.119 4.119 20 C 0.056 3.944 21 N -0.693 5.693 22 C 0.073 3.927 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.124 0.876 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.010 0.990 31 H 0.012 0.988 32 H 0.273 0.727 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.091 0.909 39 H 0.361 0.639 40 H 0.087 0.913 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 14.341 -19.122 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.272 6.272 3 C 0.314 3.686 4 O -0.418 6.418 5 C -0.041 4.041 6 C -0.127 4.127 7 C -0.028 4.028 8 O -0.329 6.329 9 C 0.107 3.893 10 C -0.584 4.584 11 H 0.048 0.952 12 C -0.185 4.185 13 N -0.582 5.582 14 Si 0.776 3.224 15 H -0.182 1.182 16 H -0.198 1.198 17 H -0.168 1.168 18 C -0.133 4.133 19 C -0.157 4.157 20 C -0.073 4.073 21 N -0.327 5.327 22 C -0.056 4.056 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.143 0.857 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.181 0.819 40 H 0.105 0.895 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.147 14.521 -18.204 23.653 hybrid contribution -0.911 -0.429 -0.745 1.253 sum -5.058 14.092 -18.949 24.150 Atomic orbital electron populations 1.23570 0.75202 1.05570 1.02702 1.86641 1.24839 1.32707 1.83054 1.24019 0.92216 0.81280 0.71059 1.90619 1.67652 1.37022 1.46489 1.20632 0.85426 0.99534 0.98472 1.21335 1.03494 0.92982 0.94882 1.22893 0.98418 0.93323 0.88151 1.87820 1.76845 1.24411 1.43863 1.20273 0.94351 0.79344 0.95333 1.21190 1.34341 0.96029 1.06880 0.95250 1.25846 0.96572 0.98841 0.97198 1.70040 1.46483 1.15144 1.26537 0.85618 0.79579 0.78364 0.78879 1.18169 1.19797 1.16813 1.21497 0.97438 0.91171 1.03233 1.21704 0.93202 1.01604 0.99175 1.22024 1.01109 0.87397 0.96727 1.60074 1.07020 1.13175 1.52427 1.21834 0.89354 1.00979 0.93476 0.92280 0.90925 0.85740 0.88153 0.92562 0.92317 0.92585 0.97281 0.97047 0.91800 0.90757 0.91578 0.88941 0.91468 0.94042 0.89024 0.81886 0.89506 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.56 113.37 1.20 1.64 16 2 O -0.36 -9.28 7.40 -51.42 -0.38 -9.66 16 3 C 0.47 12.76 6.49 71.23 0.46 13.23 16 4 O -0.53 -16.09 15.73 21.94 0.35 -15.74 16 5 C -0.04 -0.94 0.51 -52.88 -0.03 -0.97 16 6 C -0.09 -2.69 4.19 30.59 0.13 -2.57 16 7 C 0.05 1.73 5.07 71.98 0.36 2.10 16 8 O -0.41 -19.89 10.33 -148.98 -1.54 -21.43 16 9 C 0.18 9.44 4.76 71.24 0.34 9.78 16 10 C -0.55 -34.00 9.99 25.60 0.26 -33.75 16 11 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 12 C 0.01 0.79 5.47 84.65 0.46 1.26 16 13 N -0.94 -59.88 13.96 21.45 0.30 -59.59 16 14 Si 0.95 43.53 27.47 68.60 1.88 45.42 16 15 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 18 C -0.10 -1.99 4.09 30.67 0.13 -1.86 16 19 C -0.12 -2.02 5.74 30.65 0.18 -1.85 16 20 C 0.06 0.83 6.55 86.33 0.57 1.40 16 21 N -0.69 -12.59 6.13 -514.00 -3.15 -15.74 16 22 C 0.07 1.47 4.88 86.33 0.42 1.90 16 23 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 24 H 0.07 1.25 8.13 -2.39 -0.02 1.24 16 25 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.10 3.06 6.01 -2.38 -0.01 3.05 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 2.08 5.32 -2.39 -0.01 2.06 16 29 H 0.06 1.87 6.42 -2.39 -0.02 1.85 16 30 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 31 H 0.01 0.57 7.57 -2.39 -0.02 0.56 16 32 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 33 H 0.07 1.47 8.04 -2.39 -0.02 1.45 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.35 6.58 -2.39 -0.02 1.34 16 37 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 39 H 0.36 5.13 8.90 -89.70 -0.80 4.33 16 40 H 0.09 1.85 6.39 -2.39 -0.02 1.83 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -74.51 322.11 2.10 -72.41 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.17 Total: 14.02 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 4.47 Total: -9.69 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -2.85 Total: -75.32 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.57 Total: -46.83 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.42 kcal Total: -74.51 2.10 -72.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711630535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.935 kcal (2) G-P(sol) polarization free energy of solvation -74.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds