Wall clock time and date at job start Mon Mar 30 2020 05:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00131 * 2 1 4 4 C 1.46902 * 110.99809 * 123.95087 * 2 1 3 5 5 C 1.52999 * 109.47225 * 161.70108 * 4 2 1 6 6 O 1.42889 * 110.87690 * 309.30166 * 5 4 2 7 7 C 1.55147 * 110.99154 * 185.45223 * 5 4 2 8 8 C 1.54313 * 103.01670 * 206.22255 * 7 5 4 9 9 N 1.47439 * 107.23853 * 22.28560 * 8 7 5 10 10 C 1.46901 * 111.00199 * 123.25873 * 9 8 7 11 11 C 1.50698 * 109.47184 * 69.87460 * 10 9 8 12 12 O 1.21299 * 119.99753 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00004 * 179.97438 * 11 10 9 14 14 C 1.37094 * 119.99631 * 179.72369 * 13 11 10 15 15 H 1.07996 * 120.00721 * 0.02562 * 14 13 11 16 16 C 1.38955 * 119.99554 * 180.02562 * 14 13 11 17 17 N 1.31406 * 119.99835 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00235 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46712 * 90.00057 * 18 16 14 20 20 H 1.48491 * 109.47429 * 210.00181 * 18 16 14 21 21 H 1.48500 * 109.47250 * 330.00759 * 18 16 14 22 22 C 1.47846 * 108.56404 * 0.98929 * 9 8 7 23 23 H 1.09002 * 109.47303 * 296.04793 * 1 2 3 24 24 H 1.09003 * 109.46810 * 56.04588 * 1 2 3 25 25 H 1.08994 * 109.47746 * 176.04584 * 1 2 3 26 26 H 1.09004 * 109.46916 * 197.61930 * 3 2 1 27 27 H 1.08992 * 109.47317 * 317.62407 * 3 2 1 28 28 H 1.09006 * 109.47274 * 77.62425 * 3 2 1 29 29 H 1.09006 * 109.46739 * 41.70232 * 4 2 1 30 30 H 1.08998 * 109.47534 * 281.70979 * 4 2 1 31 31 H 0.96709 * 114.00293 * 297.57260 * 6 5 4 32 32 H 1.09000 * 110.70067 * 87.83385 * 7 5 4 33 33 H 1.09003 * 110.70479 * 324.60645 * 7 5 4 34 34 H 1.09007 * 109.88597 * 262.87857 * 8 7 5 35 35 H 1.09006 * 110.02334 * 141.77243 * 8 7 5 36 36 H 1.08998 * 109.46596 * 309.87589 * 10 9 8 37 37 H 1.09000 * 109.46966 * 189.87448 * 10 9 8 38 38 H 0.97000 * 119.99943 * 0.02562 * 13 11 10 39 39 H 0.97002 * 120.00027 * 179.97438 * 17 16 14 40 40 H 1.08996 * 110.36964 * 94.73612 * 22 9 8 41 41 H 1.09002 * 110.37119 * 217.07541 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.4567 -1.1335 0.8726 6 8 3.6044 -1.7385 -0.4134 7 6 4.0083 -2.0590 1.9889 8 6 5.5242 -1.7718 1.9611 9 7 5.7064 -0.4457 1.3429 10 6 6.4421 0.4563 2.2391 11 6 7.8748 0.0013 2.3444 12 8 8.2465 -0.9784 1.7333 13 7 8.7433 0.6830 3.1175 14 6 10.0453 0.2657 3.2177 15 1 10.3753 -0.6089 2.6769 16 6 10.9405 0.9682 4.0152 17 7 12.1887 0.5685 4.1108 18 14 10.3701 2.4814 4.9501 19 1 9.8763 2.0777 6.2912 20 1 11.5059 3.4254 5.1043 21 1 9.2743 3.1440 4.1981 22 6 4.3754 0.1060 1.0116 23 1 -0.3634 0.4513 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3634 -1.0251 -0.0709 26 1 3.0401 1.3595 -0.3111 27 1 1.4170 1.9827 -0.6926 28 1 1.9200 1.7896 1.0038 29 1 1.4092 -1.6761 1.2652 30 1 1.9309 -0.1625 2.0430 31 1 3.1235 -2.5715 -0.5139 32 1 3.8097 -3.1050 1.7554 33 1 3.5831 -1.7916 2.9563 34 1 6.0345 -2.5307 1.3679 35 1 5.9217 -1.7656 2.9761 36 1 5.9824 0.4410 3.2273 37 1 6.4112 1.4700 1.8396 38 1 8.4460 1.4662 3.6064 39 1 12.8137 1.0591 4.6672 40 1 4.0219 0.7523 1.8150 41 1 4.4158 0.6557 0.0712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713631206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:14 Heat of formation + Delta-G solvation = -50.547632 kcal Electronic energy + Delta-G solvation = -21655.643116 eV Core-core repulsion = 18378.584226 eV Total energy + Delta-G solvation = -3277.058890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00824 -38.29276 -36.87864 -35.36196 -33.85217 -31.69603 -31.29837 -29.43630 -28.17799 -27.32956 -25.71314 -23.94220 -21.96663 -21.11886 -20.47584 -19.24270 -18.17780 -17.01915 -16.18291 -15.87554 -15.60388 -15.24754 -15.11002 -14.82451 -14.41691 -14.03128 -13.65010 -13.41897 -13.02644 -12.96265 -12.70196 -12.55880 -12.32460 -12.16577 -12.02275 -11.93626 -11.71754 -11.54925 -11.27080 -11.14662 -10.81037 -10.57259 -10.53528 -9.93587 -9.88172 -9.51362 -8.58073 -8.49500 -8.13029 -7.88383 -6.26806 -3.77779 3.05115 3.08473 3.16892 3.54346 3.80527 4.00646 4.13665 4.21971 4.38215 4.66334 4.69946 4.85238 4.90301 5.05032 5.06808 5.18699 5.24311 5.28228 5.34424 5.37095 5.53931 5.55518 5.57582 5.64172 5.72007 5.75368 5.83251 5.94817 5.99708 6.12141 6.48077 6.71108 6.74186 7.22411 7.25998 7.63682 7.77984 8.19524 8.65784 9.00524 9.47542 9.90009 10.86640 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.035090 B = 0.003864 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.759119 B = 7245.531165 C = 7703.618619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.533 5.533 3 C 0.012 3.988 4 C 0.035 3.965 5 C 0.133 3.867 6 O -0.523 6.523 7 C -0.171 4.171 8 C 0.063 3.937 9 N -0.499 5.499 10 C 0.036 3.964 11 C 0.454 3.546 12 O -0.555 6.555 13 N -0.595 5.595 14 C -0.302 4.302 15 H 0.119 0.881 16 C 0.040 3.960 17 N -0.884 5.884 18 Si 0.879 3.121 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.270 1.270 22 C 0.055 3.945 23 H 0.021 0.979 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.025 0.975 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.370 0.630 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.369 0.631 39 H 0.273 0.727 40 H 0.051 0.949 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.548 0.954 -2.768 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.257 5.257 3 C -0.136 4.136 4 C -0.094 4.094 5 C 0.090 3.910 6 O -0.327 6.327 7 C -0.210 4.210 8 C -0.065 4.065 9 N -0.223 5.223 10 C -0.096 4.096 11 C 0.239 3.761 12 O -0.436 6.436 13 N -0.235 5.235 14 C -0.431 4.431 15 H 0.137 0.863 16 C -0.162 4.162 17 N -0.524 5.524 18 Si 0.706 3.294 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.195 1.195 22 C -0.073 4.073 23 H 0.040 0.960 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.216 0.784 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.202 0.798 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.227 0.572 -4.088 23.591 hybrid contribution -1.385 1.347 2.581 3.224 sum -24.613 1.919 -1.507 24.733 Atomic orbital electron populations 1.22427 0.87572 1.02110 1.00321 1.61848 1.07177 1.14117 1.42540 1.22758 1.02517 0.88349 0.99936 1.22775 0.96184 0.98550 0.91850 1.22117 0.91737 0.93074 0.84063 1.86638 1.74276 1.40752 1.30988 1.23554 0.98047 1.00584 0.98852 1.22651 0.92932 0.92120 0.98788 1.63236 1.15222 1.01937 1.41942 1.22139 0.94713 0.97511 0.95201 1.19650 0.86449 0.86318 0.83640 1.90571 1.78513 1.27591 1.46881 1.42209 1.10566 1.27254 1.43476 1.19430 0.82965 1.13330 1.27372 0.86299 1.25025 0.95240 0.98191 0.97776 1.69621 1.03159 1.40202 1.39438 0.86679 0.78909 0.83199 0.80640 1.19756 1.20208 1.19506 1.23312 0.87741 0.95107 1.01097 0.95998 0.91288 0.91502 0.89816 0.91700 0.95610 0.90515 0.93784 0.78416 0.90249 0.91067 0.89631 0.92743 0.93421 0.89364 0.79833 0.91691 0.93129 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.48 60.06 0.57 0.74 16 2 N -0.53 -5.04 4.68 -251.26 -1.18 -6.22 16 3 C 0.01 0.11 8.77 60.06 0.53 0.64 16 4 C 0.04 0.32 4.48 -3.82 -0.02 0.30 16 5 C 0.13 1.51 1.00 -88.48 -0.09 1.42 16 6 O -0.52 -6.63 12.89 -35.23 -0.45 -7.09 16 7 C -0.17 -1.94 6.14 -24.91 -0.15 -2.10 16 8 C 0.06 1.01 5.65 -2.84 -0.02 0.99 16 9 N -0.50 -8.54 4.85 -232.69 -1.13 -9.67 16 10 C 0.04 0.63 5.03 -4.98 -0.03 0.61 16 11 C 0.45 10.65 7.43 -10.99 -0.08 10.57 16 12 O -0.55 -15.35 15.12 5.54 0.08 -15.27 16 13 N -0.59 -14.49 5.09 -10.96 -0.06 -14.55 16 14 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 15 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 16 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 17 N -0.88 -26.20 13.96 55.50 0.77 -25.42 16 18 Si 0.88 19.62 27.73 -169.99 -4.71 14.90 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 22 C 0.05 0.73 4.26 -2.30 -0.01 0.72 16 23 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 24 H 0.07 0.46 7.99 -51.93 -0.41 0.05 16 25 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 26 H 0.08 0.86 5.00 -51.93 -0.26 0.60 16 27 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 28 H 0.03 0.22 7.80 -51.93 -0.40 -0.19 16 29 H 0.08 0.59 7.91 -51.93 -0.41 0.18 16 30 H 0.04 0.39 7.61 -51.93 -0.39 0.00 16 31 H 0.37 3.27 9.11 45.56 0.42 3.69 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 35 H 0.05 0.92 7.31 -51.93 -0.38 0.54 16 36 H 0.05 0.72 7.96 -51.93 -0.41 0.31 16 37 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 38 H 0.37 7.88 5.77 -40.82 -0.24 7.64 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.05 0.58 7.51 -51.93 -0.39 0.19 16 41 H 0.09 1.30 5.99 -51.93 -0.31 0.99 16 LS Contribution 325.09 15.07 4.90 4.90 Total: -1.00 -34.54 325.09 -7.00 -41.54 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.69 Total: 10.80 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 0.46 Total: 6.07 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -1.59 Total: -55.86 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.37 Total: -22.36 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.54 -7.00 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713631206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.003 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds