Wall clock time and date at job start Mon Mar 30 2020 05:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00131 * 2 1 4 4 C 1.46902 * 110.99809 * 123.95087 * 2 1 3 5 5 C 1.52999 * 109.47225 * 161.70108 * 4 2 1 6 6 O 1.42889 * 110.87690 * 309.30166 * 5 4 2 7 7 C 1.55147 * 110.99154 * 185.45223 * 5 4 2 8 8 C 1.54313 * 103.01670 * 206.22255 * 7 5 4 9 9 N 1.47439 * 107.23853 * 22.28560 * 8 7 5 10 10 C 1.46901 * 111.00199 * 123.25873 * 9 8 7 11 11 C 1.50698 * 109.47184 * 69.87460 * 10 9 8 12 12 O 1.21299 * 119.99753 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00004 * 179.97438 * 11 10 9 14 14 C 1.37094 * 119.99631 * 179.72369 * 13 11 10 15 15 H 1.07996 * 120.00721 * 0.02562 * 14 13 11 16 16 C 1.38955 * 119.99554 * 180.02562 * 14 13 11 17 17 N 1.31406 * 119.99835 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00235 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46712 * 90.00057 * 18 16 14 20 20 H 1.48491 * 109.47429 * 210.00181 * 18 16 14 21 21 H 1.48500 * 109.47250 * 330.00759 * 18 16 14 22 22 C 1.47846 * 108.56404 * 0.98929 * 9 8 7 23 23 H 1.09002 * 109.47303 * 296.04793 * 1 2 3 24 24 H 1.09003 * 109.46810 * 56.04588 * 1 2 3 25 25 H 1.08994 * 109.47746 * 176.04584 * 1 2 3 26 26 H 1.09004 * 109.46916 * 197.61930 * 3 2 1 27 27 H 1.08992 * 109.47317 * 317.62407 * 3 2 1 28 28 H 1.09006 * 109.47274 * 77.62425 * 3 2 1 29 29 H 1.09006 * 109.46739 * 41.70232 * 4 2 1 30 30 H 1.08998 * 109.47534 * 281.70979 * 4 2 1 31 31 H 0.96709 * 114.00293 * 297.57260 * 6 5 4 32 32 H 1.09000 * 110.70067 * 87.83385 * 7 5 4 33 33 H 1.09003 * 110.70479 * 324.60645 * 7 5 4 34 34 H 1.09007 * 109.88597 * 262.87857 * 8 7 5 35 35 H 1.09006 * 110.02334 * 141.77243 * 8 7 5 36 36 H 1.08998 * 109.46596 * 309.87589 * 10 9 8 37 37 H 1.09000 * 109.46966 * 189.87448 * 10 9 8 38 38 H 0.97000 * 119.99943 * 0.02562 * 13 11 10 39 39 H 0.97002 * 120.00027 * 179.97438 * 17 16 14 40 40 H 1.08996 * 110.36964 * 94.73612 * 22 9 8 41 41 H 1.09002 * 110.37119 * 217.07541 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.4567 -1.1335 0.8726 6 8 3.6044 -1.7385 -0.4134 7 6 4.0083 -2.0590 1.9889 8 6 5.5242 -1.7718 1.9611 9 7 5.7064 -0.4457 1.3429 10 6 6.4421 0.4563 2.2391 11 6 7.8748 0.0013 2.3444 12 8 8.2465 -0.9784 1.7333 13 7 8.7433 0.6830 3.1175 14 6 10.0453 0.2657 3.2177 15 1 10.3753 -0.6089 2.6769 16 6 10.9405 0.9682 4.0152 17 7 12.1887 0.5685 4.1108 18 14 10.3701 2.4814 4.9501 19 1 9.8763 2.0777 6.2912 20 1 11.5059 3.4254 5.1043 21 1 9.2743 3.1440 4.1981 22 6 4.3754 0.1060 1.0116 23 1 -0.3634 0.4513 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3634 -1.0251 -0.0709 26 1 3.0401 1.3595 -0.3111 27 1 1.4170 1.9827 -0.6926 28 1 1.9200 1.7896 1.0038 29 1 1.4092 -1.6761 1.2652 30 1 1.9309 -0.1625 2.0430 31 1 3.1235 -2.5715 -0.5139 32 1 3.8097 -3.1050 1.7554 33 1 3.5831 -1.7916 2.9563 34 1 6.0345 -2.5307 1.3679 35 1 5.9217 -1.7656 2.9761 36 1 5.9824 0.4410 3.2273 37 1 6.4112 1.4700 1.8396 38 1 8.4460 1.4662 3.6064 39 1 12.8137 1.0591 4.6672 40 1 4.0219 0.7523 1.8150 41 1 4.4158 0.6557 0.0712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713631206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:13 Heat of formation + Delta-G solvation = -82.567546 kcal Electronic energy + Delta-G solvation = -21657.031604 eV Core-core repulsion = 18378.584226 eV Total energy + Delta-G solvation = -3278.447378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11316 -39.95113 -37.80614 -36.43187 -35.87248 -33.76554 -32.47114 -30.37539 -29.22726 -28.25930 -26.96533 -25.56633 -22.68688 -22.38578 -21.41926 -21.16433 -20.11263 -17.93900 -17.72968 -16.99994 -16.83897 -16.57612 -16.16718 -15.90692 -15.51868 -15.40516 -15.04397 -14.83341 -14.43661 -14.14296 -13.96366 -13.77394 -13.63268 -13.21738 -13.11109 -12.90934 -12.76986 -12.58954 -12.43316 -12.41240 -12.14622 -11.97690 -11.93992 -11.50398 -11.45297 -10.74922 -10.41351 -10.24404 -9.20249 -9.15407 -8.41284 -6.02199 1.29714 1.35092 1.44428 1.96280 2.23055 2.62861 2.86974 3.14536 3.25220 3.47199 3.59235 3.66350 3.87146 4.15736 4.22525 4.30664 4.32466 4.35288 4.44021 4.49731 4.58643 4.60427 4.68596 4.77685 4.82848 4.87734 4.89519 4.98406 5.06206 5.17875 5.27103 5.53062 5.90818 6.01766 6.09295 6.12069 6.15636 6.60554 6.88721 7.05304 7.39948 7.98185 8.76744 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.035090 B = 0.003864 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.759119 B = 7245.531165 C = 7703.618619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.012 3.988 4 C 0.044 3.956 5 C 0.137 3.863 6 O -0.549 6.549 7 C -0.157 4.157 8 C 0.061 3.939 9 N -0.533 5.533 10 C 0.049 3.951 11 C 0.450 3.550 12 O -0.608 6.608 13 N -0.592 5.592 14 C -0.328 4.328 15 H 0.053 0.947 16 C -0.016 4.016 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.255 1.255 20 H -0.275 1.275 21 H -0.231 1.231 22 C 0.055 3.945 23 H 0.029 0.971 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.384 0.616 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.389 0.611 39 H 0.279 0.721 40 H 0.076 0.924 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.239 3.300 -1.308 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.276 5.276 3 C -0.136 4.136 4 C -0.085 4.085 5 C 0.095 3.905 6 O -0.355 6.355 7 C -0.196 4.196 8 C -0.067 4.067 9 N -0.258 5.258 10 C -0.082 4.082 11 C 0.238 3.762 12 O -0.491 6.491 13 N -0.235 5.235 14 C -0.457 4.457 15 H 0.071 0.929 16 C -0.214 4.214 17 N -0.577 5.577 18 Si 0.786 3.214 19 H -0.180 1.180 20 H -0.200 1.200 21 H -0.155 1.155 22 C -0.072 4.072 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.233 0.767 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.134 0.866 38 H 0.225 0.775 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -26.964 2.915 -2.639 27.249 hybrid contribution -0.174 0.486 2.004 2.070 sum -27.139 3.401 -0.635 27.358 Atomic orbital electron populations 1.22446 0.86203 1.02792 1.00815 1.61801 1.08477 1.14277 1.42995 1.22727 1.01683 0.88574 1.00593 1.22675 0.94339 0.99492 0.92008 1.22121 0.92991 0.92028 0.83395 1.86594 1.75087 1.41899 1.31939 1.23477 0.94166 1.01695 1.00228 1.22523 0.96143 0.91171 0.96831 1.63073 1.17832 1.02396 1.42455 1.22037 0.90146 0.98441 0.97562 1.20926 0.88756 0.84974 0.81554 1.90550 1.80082 1.29898 1.48577 1.42018 1.09030 1.28164 1.44270 1.18996 0.85719 1.12603 1.28429 0.92910 1.26134 0.94749 1.02348 0.98210 1.69808 1.05061 1.42376 1.40456 0.85346 0.79542 0.77225 0.79285 1.17983 1.19964 1.15473 1.23396 0.86172 0.96198 1.01401 0.95283 0.91030 0.90740 0.91408 0.91017 0.94738 0.88767 0.92800 0.76701 0.88785 0.88688 0.93555 0.94267 0.89971 0.86563 0.77513 0.91134 0.90566 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.48 127.69 1.21 1.50 16 2 N -0.55 -8.78 4.68 -948.85 -4.45 -13.22 16 3 C 0.01 0.19 8.77 127.69 1.12 1.31 16 4 C 0.04 0.63 4.48 86.30 0.39 1.02 16 5 C 0.14 2.77 1.00 -9.41 -0.01 2.76 16 6 O -0.55 -13.21 12.89 -148.98 -1.92 -15.13 16 7 C -0.16 -3.19 6.14 31.78 0.20 -3.00 16 8 C 0.06 1.97 5.65 86.65 0.49 2.46 16 9 N -0.53 -17.74 4.85 -890.10 -4.32 -22.06 16 10 C 0.05 1.63 5.03 85.56 0.43 2.06 16 11 C 0.45 21.40 7.43 87.66 0.65 22.05 16 12 O -0.61 -35.53 15.12 -3.09 -0.05 -35.57 16 13 N -0.59 -28.87 5.09 -306.98 -1.56 -30.43 16 14 C -0.33 -19.75 10.16 84.04 0.85 -18.90 16 15 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 16 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 17 N -0.94 -57.45 13.96 21.66 0.30 -57.15 16 18 Si 0.97 39.27 27.73 68.60 1.90 41.17 16 19 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.23 -7.93 6.52 99.48 0.65 -7.28 16 22 C 0.05 1.32 4.26 86.77 0.37 1.69 16 23 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 24 H 0.07 0.77 7.99 -2.39 -0.02 0.75 16 25 H 0.07 0.73 8.07 -2.39 -0.02 0.71 16 26 H 0.07 1.27 5.00 -2.38 -0.01 1.26 16 27 H 0.07 0.97 7.87 -2.39 -0.02 0.96 16 28 H 0.03 0.46 7.80 -2.38 -0.02 0.44 16 29 H 0.09 1.05 7.91 -2.38 -0.02 1.03 16 30 H 0.05 0.70 7.61 -2.39 -0.02 0.68 16 31 H 0.38 6.23 9.11 -74.05 -0.67 5.55 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.52 8.04 -2.39 -0.02 1.51 16 34 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.04 1.34 7.31 -2.38 -0.02 1.32 16 36 H 0.08 2.18 7.96 -2.39 -0.02 2.16 16 37 H 0.12 3.20 8.07 -2.39 -0.02 3.18 16 38 H 0.39 15.59 5.77 -92.71 -0.53 15.05 16 39 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 40 H 0.08 1.44 7.51 -2.39 -0.02 1.42 16 41 H 0.08 2.21 5.99 -2.39 -0.01 2.20 16 Total: -1.00 -81.92 325.09 -4.15 -86.07 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.23 Total: 33.82 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 6.16 Total: 12.51 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -10.02 Total: -122.86 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -1.97 Total: -50.71 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.17 kcal Total: -81.92 -4.15 -86.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713631206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.506 kcal (2) G-P(sol) polarization free energy of solvation -81.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds