Wall clock time and date at job start Mon Mar 30 2020 05:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99798 * 2 1 4 4 C 1.46896 * 111.00294 * 123.94839 * 2 1 3 5 5 C 1.53003 * 109.47537 * 161.90252 * 4 2 1 6 6 O 1.42901 * 110.34823 * 306.27555 * 5 4 2 7 7 C 1.54590 * 110.30658 * 68.40931 * 5 4 2 8 8 C 1.54941 * 102.92036 * 140.87689 * 7 5 4 9 9 N 1.48528 * 103.22547 * 322.58725 * 8 7 5 10 10 C 1.46901 * 111.00130 * 159.72085 * 9 8 7 11 11 C 1.50700 * 109.47034 * 52.59969 * 10 9 8 12 12 O 1.21294 * 119.99917 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99807 * 180.02562 * 11 10 9 14 14 C 1.37102 * 119.99684 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00183 * 0.02562 * 14 13 11 16 16 C 1.38949 * 119.99923 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00092 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99977 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47428 * 89.99877 * 18 16 14 20 20 H 1.48502 * 109.47075 * 210.00033 * 18 16 14 21 21 H 1.48506 * 109.46869 * 329.99560 * 18 16 14 22 22 C 1.47903 * 105.82169 * 39.20612 * 9 8 7 23 23 H 1.08998 * 109.47437 * 296.04678 * 1 2 3 24 24 H 1.09000 * 109.47341 * 56.04755 * 1 2 3 25 25 H 1.09004 * 109.47007 * 176.05274 * 1 2 3 26 26 H 1.08997 * 109.47283 * 194.09296 * 3 2 1 27 27 H 1.09004 * 109.46851 * 314.09147 * 3 2 1 28 28 H 1.08994 * 109.47421 * 74.08701 * 3 2 1 29 29 H 1.09007 * 109.47023 * 41.90085 * 4 2 1 30 30 H 1.09002 * 109.47642 * 281.90480 * 4 2 1 31 31 H 0.96695 * 114.00616 * 57.84854 * 6 5 4 32 32 H 1.09005 * 110.73082 * 259.23617 * 7 5 4 33 33 H 1.09002 * 110.72679 * 22.34514 * 7 5 4 34 34 H 1.08997 * 110.66536 * 204.15281 * 8 7 5 35 35 H 1.08996 * 110.66547 * 81.02207 * 8 7 5 36 36 H 1.08998 * 109.47789 * 172.60337 * 10 9 8 37 37 H 1.09005 * 109.47060 * 292.60741 * 10 9 8 38 38 H 0.96997 * 120.00262 * 0.02562 * 13 11 10 39 39 H 0.96996 * 120.00122 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.91738 * 94.02312 * 22 9 8 41 41 H 1.09003 * 109.91851 * 215.11872 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7658 1.1376 5 6 3.4584 -1.1290 0.8748 6 8 3.5869 -1.7940 -0.3835 7 6 4.3398 0.1406 0.9030 8 6 5.6235 -0.3448 1.6222 9 7 5.1027 -1.2766 2.6549 10 6 6.1548 -2.1919 3.1168 11 6 7.3613 -1.3961 3.5435 12 8 7.3460 -0.1855 3.4705 13 7 8.4572 -2.0296 4.0061 14 6 9.5546 -1.3056 4.3948 15 1 9.5408 -0.2276 4.3307 16 6 10.6847 -1.9587 4.8713 17 7 11.7368 -1.2647 5.2434 18 14 10.7090 -3.8233 4.9816 19 1 11.2239 -4.3878 3.7084 20 1 11.5908 -4.2414 6.1010 21 1 9.3316 -4.3228 5.2235 22 6 3.9999 -2.0200 2.0080 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0707 26 1 3.0561 1.3535 -0.2502 27 1 1.4580 1.9669 -0.7381 28 1 1.8626 1.8117 0.9882 29 1 1.4116 -1.6777 1.2631 30 1 1.9279 -0.1636 2.0436 31 1 3.2616 -1.2800 -1.1352 32 1 4.5677 0.4748 -0.1092 33 1 3.8540 0.9350 1.4697 34 1 6.1440 0.4926 2.0870 35 1 6.2793 -0.8687 0.9269 36 1 5.7856 -2.7733 3.9616 37 1 6.4321 -2.8654 2.3058 38 1 8.4696 -2.9978 4.0641 39 1 12.5258 -1.7206 5.5757 40 1 4.3749 -2.9571 1.5966 41 1 3.2123 -2.2222 2.7339 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713631207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:17 Heat of formation + Delta-G solvation = -51.019229 kcal Electronic energy + Delta-G solvation = -21664.681725 eV Core-core repulsion = 18387.602386 eV Total energy + Delta-G solvation = -3277.079340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.06034 -38.44993 -36.80821 -35.34672 -33.92126 -31.77124 -31.27069 -29.56636 -28.00060 -27.24024 -25.66965 -23.89400 -21.92431 -21.32911 -20.17541 -19.40123 -18.29441 -16.88028 -16.12855 -16.02955 -15.58126 -15.26450 -15.07628 -14.65514 -14.52147 -14.08464 -13.52056 -13.36533 -13.16813 -12.90791 -12.80653 -12.49180 -12.23378 -12.15995 -12.05389 -11.86662 -11.82978 -11.46370 -11.21692 -10.95907 -10.87815 -10.58137 -10.45763 -9.97260 -9.86080 -9.53250 -8.69069 -8.47279 -8.19627 -8.01017 -6.31140 -3.82488 3.03891 3.07956 3.15923 3.60484 3.73428 3.92509 4.10861 4.36781 4.54079 4.70235 4.81463 4.86846 4.97057 5.09601 5.13951 5.21974 5.30431 5.33900 5.48849 5.51215 5.55263 5.60926 5.66152 5.73064 5.77056 5.84607 5.90075 5.94393 6.08462 6.26026 6.62336 6.67284 6.69585 7.13926 7.20575 7.58452 7.75503 8.14764 8.59907 8.95074 9.42349 9.82806 10.81915 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.046499 B = 0.003659 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.019721 B = 7650.753037 C = 7952.843021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.005 3.995 4 C 0.034 3.966 5 C 0.131 3.869 6 O -0.553 6.553 7 C -0.151 4.151 8 C 0.038 3.962 9 N -0.493 5.493 10 C 0.033 3.967 11 C 0.452 3.548 12 O -0.563 6.563 13 N -0.589 5.589 14 C -0.305 4.305 15 H 0.120 0.880 16 C 0.042 3.958 17 N -0.881 5.881 18 Si 0.879 3.121 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.269 1.269 22 C 0.045 3.955 23 H 0.025 0.975 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.381 0.619 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.371 0.629 39 H 0.273 0.727 40 H 0.058 0.942 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.339 -1.640 -10.008 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.142 4.142 4 C -0.094 4.094 5 C 0.089 3.911 6 O -0.360 6.360 7 C -0.189 4.189 8 C -0.089 4.089 9 N -0.218 5.218 10 C -0.099 4.099 11 C 0.238 3.762 12 O -0.445 6.445 13 N -0.228 5.228 14 C -0.433 4.433 15 H 0.138 0.862 16 C -0.161 4.161 17 N -0.521 5.521 18 Si 0.706 3.294 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.084 4.084 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.230 0.770 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.204 0.796 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.887 -1.232 -9.555 22.098 hybrid contribution -0.053 -1.203 -0.054 1.206 sum -19.940 -2.436 -9.609 22.268 Atomic orbital electron populations 1.22387 0.87131 1.02257 1.00491 1.61864 1.08070 1.14163 1.43130 1.22878 1.02362 0.88502 1.00496 1.22866 0.96163 0.98404 0.91965 1.21889 0.92408 0.91915 0.84842 1.86455 1.86226 1.47182 1.16136 1.23505 0.97140 0.97523 1.00756 1.23489 0.95153 0.98394 0.91847 1.64701 1.07795 1.15186 1.34119 1.22151 0.92225 0.94834 1.00687 1.19604 0.83952 0.88583 0.84047 1.90473 1.82277 1.13844 1.57953 1.42196 1.14031 1.07865 1.58691 1.19429 0.89715 0.94722 1.39454 0.86244 1.25036 0.95370 0.98451 0.97269 1.69618 1.04202 1.35719 1.42586 0.86676 0.78467 0.85394 0.78910 1.19628 1.20153 1.19422 1.22861 0.95624 0.96174 0.93718 0.95606 0.91348 0.91342 0.89766 0.91758 0.95061 0.90296 0.92985 0.77021 0.90565 0.90270 0.86368 0.94244 0.89051 0.93012 0.79646 0.91602 0.92348 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.50 60.07 0.57 0.76 16 2 N -0.55 -4.90 4.19 -251.26 -1.05 -5.95 16 3 C 0.01 0.05 8.32 60.07 0.50 0.55 16 4 C 0.03 0.35 4.14 -3.82 -0.02 0.33 16 5 C 0.13 1.59 1.15 -89.27 -0.10 1.49 16 6 O -0.55 -6.96 12.93 -35.23 -0.46 -7.42 16 7 C -0.15 -1.95 4.34 -24.87 -0.11 -2.06 16 8 C 0.04 0.65 5.30 -1.90 -0.01 0.64 16 9 N -0.49 -8.29 5.26 -231.90 -1.22 -9.51 16 10 C 0.03 0.58 5.52 -4.98 -0.03 0.55 16 11 C 0.45 10.39 7.49 -10.98 -0.08 10.31 16 12 O -0.56 -14.83 13.10 5.55 0.07 -14.76 16 13 N -0.59 -14.19 5.09 -10.96 -0.06 -14.25 16 14 C -0.30 -8.64 10.16 -14.93 -0.15 -8.80 16 15 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 16 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 17 N -0.88 -25.84 13.96 55.50 0.77 -25.07 16 18 Si 0.88 19.53 27.74 -169.99 -4.71 14.81 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 22 C 0.04 0.61 6.17 -2.76 -0.02 0.59 16 23 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 24 H 0.07 0.43 8.02 -51.93 -0.42 0.01 16 25 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.08 0.74 4.76 -51.93 -0.25 0.49 16 27 H 0.06 0.46 7.94 -51.93 -0.41 0.05 16 28 H 0.03 0.28 7.73 -51.93 -0.40 -0.13 16 29 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 30 H 0.05 0.56 7.72 -51.93 -0.40 0.15 16 31 H 0.38 3.90 8.35 45.56 0.38 4.28 16 32 H 0.08 0.89 6.98 -51.93 -0.36 0.53 16 33 H 0.08 0.99 6.47 -51.93 -0.34 0.66 16 34 H 0.12 2.39 5.97 -51.93 -0.31 2.08 16 35 H 0.04 0.71 8.02 -51.93 -0.42 0.29 16 36 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.05 0.84 7.81 -51.93 -0.41 0.43 16 38 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.06 0.81 7.39 -51.93 -0.38 0.43 16 41 H 0.09 1.02 7.69 -51.93 -0.40 0.62 16 LS Contribution 319.17 15.07 4.81 4.81 Total: -1.00 -32.02 319.17 -6.96 -38.98 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.58 Total: 12.93 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 0.46 Total: 5.42 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -1.55 Total: -54.77 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.38 Total: -22.17 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.02 -6.96 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713631207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.038 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds