Wall clock time and date at job start Mon Mar 30 2020 05:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99798 * 2 1 4 4 C 1.46896 * 111.00294 * 123.94839 * 2 1 3 5 5 C 1.53003 * 109.47537 * 161.90252 * 4 2 1 6 6 O 1.42901 * 110.34823 * 306.27555 * 5 4 2 7 7 C 1.54590 * 110.30658 * 68.40931 * 5 4 2 8 8 C 1.54941 * 102.92036 * 140.87689 * 7 5 4 9 9 N 1.48528 * 103.22547 * 322.58725 * 8 7 5 10 10 C 1.46901 * 111.00130 * 159.72085 * 9 8 7 11 11 C 1.50700 * 109.47034 * 52.59969 * 10 9 8 12 12 O 1.21294 * 119.99917 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99807 * 180.02562 * 11 10 9 14 14 C 1.37102 * 119.99684 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00183 * 0.02562 * 14 13 11 16 16 C 1.38949 * 119.99923 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00092 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99977 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47428 * 89.99877 * 18 16 14 20 20 H 1.48502 * 109.47075 * 210.00033 * 18 16 14 21 21 H 1.48506 * 109.46869 * 329.99560 * 18 16 14 22 22 C 1.47903 * 105.82169 * 39.20612 * 9 8 7 23 23 H 1.08998 * 109.47437 * 296.04678 * 1 2 3 24 24 H 1.09000 * 109.47341 * 56.04755 * 1 2 3 25 25 H 1.09004 * 109.47007 * 176.05274 * 1 2 3 26 26 H 1.08997 * 109.47283 * 194.09296 * 3 2 1 27 27 H 1.09004 * 109.46851 * 314.09147 * 3 2 1 28 28 H 1.08994 * 109.47421 * 74.08701 * 3 2 1 29 29 H 1.09007 * 109.47023 * 41.90085 * 4 2 1 30 30 H 1.09002 * 109.47642 * 281.90480 * 4 2 1 31 31 H 0.96695 * 114.00616 * 57.84854 * 6 5 4 32 32 H 1.09005 * 110.73082 * 259.23617 * 7 5 4 33 33 H 1.09002 * 110.72679 * 22.34514 * 7 5 4 34 34 H 1.08997 * 110.66536 * 204.15281 * 8 7 5 35 35 H 1.08996 * 110.66547 * 81.02207 * 8 7 5 36 36 H 1.08998 * 109.47789 * 172.60337 * 10 9 8 37 37 H 1.09005 * 109.47060 * 292.60741 * 10 9 8 38 38 H 0.96997 * 120.00262 * 0.02562 * 13 11 10 39 39 H 0.96996 * 120.00122 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.91738 * 94.02312 * 22 9 8 41 41 H 1.09003 * 109.91851 * 215.11872 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7658 1.1376 5 6 3.4584 -1.1290 0.8748 6 8 3.5869 -1.7940 -0.3835 7 6 4.3398 0.1406 0.9030 8 6 5.6235 -0.3448 1.6222 9 7 5.1027 -1.2766 2.6549 10 6 6.1548 -2.1919 3.1168 11 6 7.3613 -1.3961 3.5435 12 8 7.3460 -0.1855 3.4705 13 7 8.4572 -2.0296 4.0061 14 6 9.5546 -1.3056 4.3948 15 1 9.5408 -0.2276 4.3307 16 6 10.6847 -1.9587 4.8713 17 7 11.7368 -1.2647 5.2434 18 14 10.7090 -3.8233 4.9816 19 1 11.2239 -4.3878 3.7084 20 1 11.5908 -4.2414 6.1010 21 1 9.3316 -4.3228 5.2235 22 6 3.9999 -2.0200 2.0080 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0707 26 1 3.0561 1.3535 -0.2502 27 1 1.4580 1.9669 -0.7381 28 1 1.8626 1.8117 0.9882 29 1 1.4116 -1.6777 1.2631 30 1 1.9279 -0.1636 2.0436 31 1 3.2616 -1.2800 -1.1352 32 1 4.5677 0.4748 -0.1092 33 1 3.8540 0.9350 1.4697 34 1 6.1440 0.4926 2.0870 35 1 6.2793 -0.8687 0.9269 36 1 5.7856 -2.7733 3.9616 37 1 6.4321 -2.8654 2.3058 38 1 8.4696 -2.9978 4.0641 39 1 12.5258 -1.7206 5.5757 40 1 4.3749 -2.9571 1.5966 41 1 3.2123 -2.2222 2.7339 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713631207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:17 Heat of formation + Delta-G solvation = -80.030392 kcal Electronic energy + Delta-G solvation = -21665.939744 eV Core-core repulsion = 18387.602386 eV Total energy + Delta-G solvation = -3278.337358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23332 -40.05651 -37.84107 -36.43940 -35.87355 -33.80649 -32.51767 -30.58556 -29.03323 -28.25582 -26.97508 -25.51041 -22.69642 -22.62450 -21.34457 -21.16142 -20.22396 -17.98000 -17.63767 -17.08045 -16.90480 -16.60686 -16.09439 -15.96972 -15.87927 -15.14177 -15.02094 -14.87963 -14.53419 -14.29237 -14.00349 -13.65632 -13.53887 -13.27987 -13.08925 -12.96205 -12.84461 -12.64630 -12.47689 -12.41422 -12.19716 -11.98853 -11.90870 -11.50896 -11.42765 -10.83983 -10.29576 -10.21127 -9.41427 -9.37062 -8.42742 -6.03527 1.29682 1.34291 1.43484 1.91471 2.21793 2.58757 2.91481 3.13156 3.16001 3.31808 3.61888 3.82959 3.91051 4.11891 4.24957 4.27255 4.34466 4.35514 4.46249 4.50725 4.60926 4.63789 4.67316 4.78481 4.80655 4.85289 4.99819 5.03996 5.06273 5.16134 5.21675 5.51525 5.81268 5.87999 5.97382 6.02668 6.05246 6.57480 6.86392 6.90664 7.36814 7.93388 8.74796 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.046499 B = 0.003659 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.019721 B = 7650.753037 C = 7952.843021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.005 3.995 4 C 0.042 3.958 5 C 0.138 3.862 6 O -0.563 6.563 7 C -0.139 4.139 8 C 0.037 3.963 9 N -0.508 5.508 10 C 0.043 3.957 11 C 0.450 3.550 12 O -0.604 6.604 13 N -0.590 5.590 14 C -0.328 4.328 15 H 0.057 0.943 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.963 3.037 19 H -0.258 1.258 20 H -0.274 1.274 21 H -0.232 1.232 22 C 0.044 3.956 23 H 0.026 0.974 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.025 0.975 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.391 0.609 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.389 0.611 39 H 0.280 0.720 40 H 0.061 0.939 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.854 -4.558 -10.775 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.276 5.276 3 C -0.142 4.142 4 C -0.087 4.087 5 C 0.096 3.904 6 O -0.371 6.371 7 C -0.177 4.177 8 C -0.090 4.090 9 N -0.233 5.233 10 C -0.089 4.089 11 C 0.238 3.762 12 O -0.488 6.488 13 N -0.231 5.231 14 C -0.457 4.457 15 H 0.075 0.925 16 C -0.213 4.213 17 N -0.574 5.574 18 Si 0.783 3.217 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.155 1.155 22 C -0.084 4.084 23 H 0.044 0.956 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.043 0.957 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.242 0.758 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.141 0.859 37 H 0.093 0.907 38 H 0.225 0.775 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.443 -4.149 -10.341 25.057 hybrid contribution 0.702 -0.132 0.136 0.727 sum -21.741 -4.281 -10.205 24.396 Atomic orbital electron populations 1.22442 0.85913 1.02910 1.01020 1.61863 1.09152 1.14167 1.42404 1.22871 1.02213 0.88567 1.00595 1.22733 0.94787 0.98981 0.92164 1.21789 0.93391 0.90719 0.84514 1.86429 1.86504 1.47582 1.16584 1.23450 0.95177 0.98230 1.00835 1.23290 0.96716 0.97266 0.91771 1.64686 1.08166 1.15751 1.34702 1.22119 0.89922 0.94279 1.02531 1.20753 0.84928 0.88610 0.81947 1.90485 1.83228 1.16244 1.58832 1.42021 1.13286 1.08511 1.59312 1.19004 0.92304 0.92651 1.41708 0.92493 1.26095 0.93964 1.05448 0.95751 1.69795 1.05250 1.38886 1.43485 0.85387 0.80522 0.76441 0.79338 1.18253 1.19859 1.15491 1.22969 0.94823 0.95967 0.94614 0.95561 0.90260 0.90746 0.90407 0.90359 0.95667 0.89276 0.93495 0.75847 0.89374 0.90012 0.90486 0.95756 0.85934 0.90731 0.77528 0.91097 0.92090 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.50 127.69 1.21 1.51 16 2 N -0.55 -8.44 4.19 -948.83 -3.97 -12.41 16 3 C 0.01 0.08 8.32 127.69 1.06 1.14 16 4 C 0.04 0.74 4.14 86.30 0.36 1.10 16 5 C 0.14 3.02 1.15 -9.92 -0.01 3.01 16 6 O -0.56 -12.70 12.93 -148.98 -1.93 -14.63 16 7 C -0.14 -3.48 4.34 31.80 0.14 -3.34 16 8 C 0.04 1.29 5.30 86.65 0.46 1.75 16 9 N -0.51 -16.43 5.26 -887.59 -4.67 -21.09 16 10 C 0.04 1.42 5.52 85.56 0.47 1.90 16 11 C 0.45 20.89 7.49 87.66 0.66 21.55 16 12 O -0.60 -33.46 13.10 -3.07 -0.04 -33.50 16 13 N -0.59 -28.45 5.09 -306.98 -1.56 -30.01 16 14 C -0.33 -19.40 10.16 84.04 0.85 -18.55 16 15 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 16 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 17 N -0.93 -56.71 13.96 21.66 0.30 -56.41 16 18 Si 0.96 39.30 27.74 68.60 1.90 41.20 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 22 C 0.04 1.08 6.17 86.44 0.53 1.61 16 23 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 24 H 0.08 0.77 8.02 -2.39 -0.02 0.75 16 25 H 0.07 0.80 8.08 -2.38 -0.02 0.78 16 26 H 0.08 1.25 4.76 -2.39 -0.01 1.24 16 27 H 0.08 0.94 7.94 -2.38 -0.02 0.93 16 28 H 0.02 0.41 7.73 -2.39 -0.02 0.39 16 29 H 0.09 1.42 7.92 -2.38 -0.02 1.40 16 30 H 0.05 0.89 7.72 -2.39 -0.02 0.87 16 31 H 0.39 7.00 8.35 -74.06 -0.62 6.38 16 32 H 0.09 1.98 6.98 -2.38 -0.02 1.96 16 33 H 0.08 2.01 6.47 -2.39 -0.02 1.99 16 34 H 0.08 3.32 5.97 -2.39 -0.01 3.30 16 35 H 0.02 0.89 8.02 -2.39 -0.02 0.87 16 36 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.07 2.19 7.81 -2.38 -0.02 2.17 16 38 H 0.39 15.64 5.76 -92.71 -0.53 15.11 16 39 H 0.28 15.50 8.31 -92.71 -0.77 14.72 16 40 H 0.06 1.48 7.39 -2.39 -0.02 1.47 16 41 H 0.11 2.16 7.69 -2.39 -0.02 2.14 16 Total: -1.00 -74.47 319.17 -3.93 -78.40 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -0.17 Total: 37.08 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 6.20 Total: 11.37 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -9.90 Total: -119.92 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -1.97 Total: -48.13 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 1.90 Total: 41.20 kcal Total: -74.47 -3.93 -78.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713631207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.633 kcal (2) G-P(sol) polarization free energy of solvation -74.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds