Wall clock time and date at job start Mon Mar 30 2020 04:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00307 * 2 1 4 4 C 1.53001 * 109.47246 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46931 * 65.00089 * 4 3 2 6 6 C 1.37096 * 119.99866 * 264.46624 * 5 4 3 7 7 H 1.08006 * 119.99629 * 138.27450 * 6 5 4 8 8 C 1.38948 * 120.00360 * 318.27264 * 6 5 4 9 9 N 1.31411 * 119.99914 * 341.88528 * 8 6 5 10 10 Si 1.86806 * 120.00109 * 161.88869 * 8 6 5 11 11 H 1.48501 * 109.47221 * 89.99843 * 10 8 6 12 12 H 1.48497 * 109.46841 * 210.00032 * 10 8 6 13 13 H 1.48499 * 109.46946 * 330.00142 * 10 8 6 14 14 C 1.34778 * 120.00093 * 84.47181 * 5 4 3 15 15 O 1.21291 * 119.99361 * 359.97438 * 14 5 4 16 16 C 1.50698 * 119.99969 * 179.97438 * 14 5 4 17 17 C 1.53001 * 109.46850 * 179.97438 * 16 14 5 18 18 O 1.42894 * 109.46924 * 179.97438 * 17 16 14 19 19 C 1.42907 * 114.00164 * 180.02562 * 18 17 16 20 20 C 1.53782 * 113.61756 * 210.00406 * 19 18 17 21 21 C 1.53774 * 87.17205 * 220.05881 * 20 19 18 22 22 C 1.53775 * 87.08319 * 25.38940 * 21 20 19 23 23 H 1.08997 * 109.47172 * 299.99961 * 1 2 3 24 24 H 1.08999 * 109.47301 * 59.99980 * 1 2 3 25 25 H 1.08998 * 109.47436 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46581 * 60.00230 * 3 2 1 27 27 H 1.08991 * 109.46686 * 300.00166 * 3 2 1 28 28 H 1.09005 * 109.47102 * 305.00062 * 4 3 2 29 29 H 1.08998 * 109.47254 * 185.00244 * 4 3 2 30 30 H 0.96999 * 120.00054 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.46763 * 60.00316 * 16 14 5 32 32 H 1.08994 * 109.47500 * 300.00002 * 16 14 5 33 33 H 1.09007 * 109.47006 * 60.00689 * 17 16 14 34 34 H 1.08994 * 109.47342 * 300.00431 * 17 16 14 35 35 H 1.09000 * 112.90529 * 341.25330 * 19 18 17 36 36 H 1.08998 * 113.61395 * 105.46541 * 20 19 18 37 37 H 1.09002 * 113.61130 * 334.65419 * 20 19 18 38 38 H 1.09000 * 113.61402 * 139.93843 * 21 20 19 39 39 H 1.08997 * 113.61729 * 270.83745 * 21 20 19 40 40 H 1.09005 * 113.61702 * 89.11679 * 22 21 20 41 41 H 1.08995 * 113.61677 * 219.93308 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2060 -0.7861 -1.3048 7 1 3.8776 -1.3573 -2.1606 8 6 4.8621 -1.4199 -0.2567 9 7 5.5680 -0.7150 0.5987 10 14 4.7408 -3.2740 -0.0637 11 1 5.8428 -3.9234 -0.8181 12 1 4.8482 -3.6300 1.3740 13 1 3.4351 -3.7424 -0.5936 14 6 4.1541 1.3214 -2.3535 15 8 3.9498 2.5161 -2.3074 16 6 4.6074 0.6834 -3.6413 17 6 4.7303 1.7556 -4.7259 18 8 5.1607 1.1508 -5.9469 19 6 5.3085 2.0705 -7.0306 20 6 5.0466 1.4440 -8.4104 21 6 6.2360 2.2706 -8.9269 22 6 6.7672 2.2624 -7.4838 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 3.8515 0.5681 0.8410 29 1 3.9786 2.1764 0.0890 30 1 6.0264 -1.1575 1.3302 31 1 3.8788 -0.0653 -3.9520 32 1 5.5759 0.2069 -3.4896 33 1 5.4588 2.5047 -4.4154 34 1 3.7616 2.2317 -4.8775 35 1 4.7750 3.0070 -6.8680 36 1 4.0910 1.7338 -8.8473 37 1 5.2168 0.3678 -8.4406 38 1 6.8711 1.7304 -9.6290 39 1 5.9567 3.2619 -9.2837 40 1 7.4085 1.4099 -7.2594 41 1 7.2020 3.2123 -7.1731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716837273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:31 Heat of formation + Delta-G solvation = -107.493170 kcal Electronic energy + Delta-G solvation = -21390.424406 eV Core-core repulsion = 18078.603421 eV Total energy + Delta-G solvation = -3311.820985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.16128 -38.61011 -36.99396 -35.81889 -34.63095 -31.56276 -30.87705 -28.86355 -25.83628 -25.63192 -24.90456 -24.51026 -23.16448 -21.29876 -19.63483 -18.94524 -17.17734 -16.57862 -15.95339 -15.59491 -15.41123 -15.27010 -15.12617 -14.46482 -14.33174 -13.97966 -13.92572 -13.51979 -12.59272 -12.43769 -12.40656 -12.17090 -11.97674 -11.52330 -11.36076 -11.15991 -11.13302 -10.99558 -10.86945 -10.69216 -10.52069 -10.36450 -10.35435 -10.31004 -9.99655 -9.11053 -9.07494 -8.94889 -8.43172 -7.42870 -6.30134 -4.01034 3.19931 3.29070 3.35506 3.86763 3.94374 4.23445 4.51596 4.60779 4.65053 4.83962 4.89921 5.02297 5.16074 5.37301 5.63302 5.66543 5.72305 5.74636 5.76706 5.78866 5.83993 5.94605 5.96797 6.00558 6.06484 6.09924 6.18666 6.29725 6.33346 6.48725 6.61581 6.70029 6.80070 7.25194 7.52933 7.63215 7.84467 8.04913 8.42282 9.16116 9.53266 9.96834 10.74377 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.004650 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.962605 B = 6020.245636 C = 6774.239021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.121 3.879 5 N -0.427 5.427 6 C -0.325 4.325 7 H 0.086 0.914 8 C 0.050 3.950 9 N -0.866 5.866 10 Si 0.915 3.085 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.475 3.525 15 O -0.616 6.616 16 C -0.115 4.115 17 C 0.080 3.920 18 O -0.378 6.378 19 C 0.063 3.937 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.158 4.158 23 H 0.030 0.970 24 H 0.031 0.969 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.268 0.732 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 2.745 -9.438 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.003 4.003 5 N -0.144 5.144 6 C -0.453 4.453 7 H 0.103 0.897 8 C -0.156 4.156 9 N -0.503 5.503 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.192 1.192 14 C 0.264 3.736 15 O -0.503 6.503 16 C -0.155 4.155 17 C 0.003 3.997 18 O -0.297 6.297 19 C 0.005 3.995 20 C -0.176 4.176 21 C -0.180 4.180 22 C -0.196 4.196 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.670 2.909 -9.208 10.018 hybrid contribution -0.349 -0.507 0.339 0.702 sum -3.019 2.402 -8.869 9.672 Atomic orbital electron populations 1.22642 0.83420 1.01741 0.98827 1.88131 1.17388 1.27777 1.95043 1.23055 0.96608 0.84296 0.98689 1.21347 0.89042 0.98890 0.90984 1.43248 1.56384 1.07387 1.07409 1.19259 1.36575 0.82061 1.07417 0.89655 1.25343 0.93685 0.99851 0.96730 1.69926 1.27687 1.36677 1.15970 0.86137 0.78847 0.83287 0.77567 1.20476 1.20909 1.19248 1.20256 0.80697 0.86130 0.86487 1.90508 1.58034 1.15489 1.86315 1.21153 1.04116 0.98150 0.92037 1.22270 0.98561 0.95485 0.83339 1.87894 1.87990 1.34620 1.19187 1.23661 0.95979 0.93227 0.86647 1.23210 0.98450 1.01014 0.94920 1.22645 0.98247 1.00372 0.96698 1.23511 0.97793 1.02540 0.95727 0.95163 0.95007 0.90412 0.94297 0.94006 0.87605 0.91229 0.92182 0.89737 0.88727 0.93031 0.93276 0.89804 0.91334 0.89223 0.91018 0.90241 0.89252 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.83 10.44 -35.23 -0.37 -8.20 16 3 C 0.05 1.08 6.24 37.16 0.23 1.31 16 4 C 0.12 2.92 5.26 -4.04 -0.02 2.90 16 5 N -0.43 -10.89 2.45 -114.81 -0.28 -11.17 16 6 C -0.33 -8.41 8.29 -14.93 -0.12 -8.54 16 7 H 0.09 2.16 7.21 -52.48 -0.38 1.78 16 8 C 0.05 1.28 4.95 -17.47 -0.09 1.19 16 9 N -0.87 -23.25 11.66 55.50 0.65 -22.60 16 10 Si 0.92 20.22 29.59 -169.99 -5.03 15.19 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 C 0.47 11.70 7.59 -10.99 -0.08 11.62 16 15 O -0.62 -16.04 15.65 5.55 0.09 -15.96 16 16 C -0.11 -2.42 4.80 -27.88 -0.13 -2.55 16 17 C 0.08 1.50 5.07 37.16 0.19 1.69 16 18 O -0.38 -6.53 10.36 -35.23 -0.36 -6.89 16 19 C 0.06 0.86 4.32 -25.83 -0.11 0.75 16 20 C -0.14 -1.56 7.91 -25.92 -0.20 -1.76 16 21 C -0.14 -1.38 8.08 -25.93 -0.21 -1.59 16 22 C -0.16 -1.87 7.92 -25.83 -0.20 -2.07 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.11 2.73 5.81 -51.93 -0.30 2.43 16 29 H 0.07 1.68 7.59 -51.93 -0.39 1.29 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 31 H 0.08 1.72 7.70 -51.93 -0.40 1.32 16 32 H 0.09 2.04 8.10 -51.93 -0.42 1.62 16 33 H 0.05 0.99 8.10 -51.92 -0.42 0.57 16 34 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.08 1.08 7.87 -51.93 -0.41 0.67 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -29.73 341.27 -6.74 -36.47 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.93 Total: 3.47 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 0.35 Total: 4.55 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.37 Total: -33.77 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.65 Total: -31.05 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.73 -6.74 -36.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716837273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.022 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds