Wall clock time and date at job start Mon Mar 30 2020 04:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00307 * 2 1 4 4 C 1.53001 * 109.47246 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46931 * 65.00089 * 4 3 2 6 6 C 1.37096 * 119.99866 * 264.46624 * 5 4 3 7 7 H 1.08006 * 119.99629 * 138.27450 * 6 5 4 8 8 C 1.38948 * 120.00360 * 318.27264 * 6 5 4 9 9 N 1.31411 * 119.99914 * 341.88528 * 8 6 5 10 10 Si 1.86806 * 120.00109 * 161.88869 * 8 6 5 11 11 H 1.48501 * 109.47221 * 89.99843 * 10 8 6 12 12 H 1.48497 * 109.46841 * 210.00032 * 10 8 6 13 13 H 1.48499 * 109.46946 * 330.00142 * 10 8 6 14 14 C 1.34778 * 120.00093 * 84.47181 * 5 4 3 15 15 O 1.21291 * 119.99361 * 359.97438 * 14 5 4 16 16 C 1.50698 * 119.99969 * 179.97438 * 14 5 4 17 17 C 1.53001 * 109.46850 * 179.97438 * 16 14 5 18 18 O 1.42894 * 109.46924 * 179.97438 * 17 16 14 19 19 C 1.42907 * 114.00164 * 180.02562 * 18 17 16 20 20 C 1.53782 * 113.61756 * 210.00406 * 19 18 17 21 21 C 1.53774 * 87.17205 * 220.05881 * 20 19 18 22 22 C 1.53775 * 87.08319 * 25.38940 * 21 20 19 23 23 H 1.08997 * 109.47172 * 299.99961 * 1 2 3 24 24 H 1.08999 * 109.47301 * 59.99980 * 1 2 3 25 25 H 1.08998 * 109.47436 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46581 * 60.00230 * 3 2 1 27 27 H 1.08991 * 109.46686 * 300.00166 * 3 2 1 28 28 H 1.09005 * 109.47102 * 305.00062 * 4 3 2 29 29 H 1.08998 * 109.47254 * 185.00244 * 4 3 2 30 30 H 0.96999 * 120.00054 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.46763 * 60.00316 * 16 14 5 32 32 H 1.08994 * 109.47500 * 300.00002 * 16 14 5 33 33 H 1.09007 * 109.47006 * 60.00689 * 17 16 14 34 34 H 1.08994 * 109.47342 * 300.00431 * 17 16 14 35 35 H 1.09000 * 112.90529 * 341.25330 * 19 18 17 36 36 H 1.08998 * 113.61395 * 105.46541 * 20 19 18 37 37 H 1.09002 * 113.61130 * 334.65419 * 20 19 18 38 38 H 1.09000 * 113.61402 * 139.93843 * 21 20 19 39 39 H 1.08997 * 113.61729 * 270.83745 * 21 20 19 40 40 H 1.09005 * 113.61702 * 89.11679 * 22 21 20 41 41 H 1.08995 * 113.61677 * 219.93308 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2060 -0.7861 -1.3048 7 1 3.8776 -1.3573 -2.1606 8 6 4.8621 -1.4199 -0.2567 9 7 5.5680 -0.7150 0.5987 10 14 4.7408 -3.2740 -0.0637 11 1 5.8428 -3.9234 -0.8181 12 1 4.8482 -3.6300 1.3740 13 1 3.4351 -3.7424 -0.5936 14 6 4.1541 1.3214 -2.3535 15 8 3.9498 2.5161 -2.3074 16 6 4.6074 0.6834 -3.6413 17 6 4.7303 1.7556 -4.7259 18 8 5.1607 1.1508 -5.9469 19 6 5.3085 2.0705 -7.0306 20 6 5.0466 1.4440 -8.4104 21 6 6.2360 2.2706 -8.9269 22 6 6.7672 2.2624 -7.4838 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 3.8515 0.5681 0.8410 29 1 3.9786 2.1764 0.0890 30 1 6.0264 -1.1575 1.3302 31 1 3.8788 -0.0653 -3.9520 32 1 5.5759 0.2069 -3.4896 33 1 5.4588 2.5047 -4.4154 34 1 3.7616 2.2317 -4.8775 35 1 4.7750 3.0070 -6.8680 36 1 4.0910 1.7338 -8.8473 37 1 5.2168 0.3678 -8.4406 38 1 6.8711 1.7304 -9.6290 39 1 5.9567 3.2619 -9.2837 40 1 7.4085 1.4099 -7.2594 41 1 7.2020 3.2123 -7.1731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716837273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:31 Heat of formation + Delta-G solvation = -125.572322 kcal Electronic energy + Delta-G solvation = -21391.208377 eV Core-core repulsion = 18078.603421 eV Total energy + Delta-G solvation = -3312.604956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.69627 -40.04459 -38.59414 -37.10432 -36.53246 -33.53289 -32.56005 -30.55425 -27.28456 -26.69960 -26.52834 -25.74462 -24.69132 -23.01502 -20.99143 -20.49555 -18.77384 -18.25511 -17.51544 -17.29198 -16.90579 -16.77701 -16.40199 -16.10307 -16.01909 -15.61781 -15.26128 -15.06674 -14.33541 -13.80379 -13.64163 -13.49063 -13.33896 -13.24053 -12.88846 -12.86895 -12.57085 -12.54133 -12.36001 -12.27375 -12.07501 -11.91507 -11.75879 -11.53317 -11.28117 -10.99463 -10.56247 -10.36483 -10.33542 -9.41285 -8.26811 -6.03712 1.44158 1.50226 1.61965 1.99699 2.32974 2.54157 2.99005 3.10934 3.31049 3.69593 3.74414 3.96542 3.97084 4.13832 4.16311 4.25616 4.30247 4.43374 4.49223 4.52816 4.57246 4.61112 4.68760 4.80781 4.83740 4.87251 4.90180 4.94187 5.02141 5.05687 5.07225 5.26361 5.31344 5.43805 5.52644 6.04312 6.34517 6.40400 6.43195 7.16908 7.57441 8.00446 8.78232 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.004650 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.962605 B = 6020.245636 C = 6774.239021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.063 3.937 4 C 0.119 3.881 5 N -0.437 5.437 6 C -0.337 4.337 7 H 0.088 0.912 8 C 0.010 3.990 9 N -0.896 5.896 10 Si 0.979 3.021 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.265 1.265 14 C 0.463 3.537 15 O -0.635 6.635 16 C -0.106 4.106 17 C 0.095 3.905 18 O -0.392 6.392 19 C 0.040 3.960 20 C -0.136 4.136 21 C -0.126 4.126 22 C -0.161 4.161 23 H 0.052 0.948 24 H 0.039 0.961 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.270 0.730 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.554 2.151 -10.588 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.014 4.014 4 C -0.005 4.005 5 N -0.154 5.154 6 C -0.465 4.465 7 H 0.106 0.894 8 C -0.193 4.193 9 N -0.534 5.534 10 Si 0.803 3.197 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.189 1.189 14 C 0.253 3.747 15 O -0.525 6.525 16 C -0.145 4.145 17 C 0.018 3.982 18 O -0.311 6.311 19 C -0.017 4.017 20 C -0.173 4.173 21 C -0.163 4.163 22 C -0.199 4.199 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.400 2.316 -10.372 11.158 hybrid contribution -0.142 -0.280 0.688 0.756 sum -3.542 2.036 -9.685 10.511 Atomic orbital electron populations 1.22891 0.80578 1.03383 1.00280 1.88059 1.20526 1.27775 1.95322 1.22819 0.94332 0.84659 0.99597 1.21308 0.91491 0.97629 0.90054 1.43477 1.56433 1.07589 1.07941 1.19473 1.36833 0.82337 1.07863 0.89421 1.26114 0.93069 1.03884 0.96204 1.70022 1.28427 1.38394 1.16527 0.85162 0.78945 0.78166 0.77433 1.19722 1.20768 1.18883 1.20828 0.80376 0.86058 0.87433 1.90476 1.58901 1.16296 1.86816 1.21053 1.03538 0.98715 0.91243 1.21963 0.98331 0.94230 0.83627 1.87869 1.88104 1.35874 1.19280 1.24138 0.97712 0.93442 0.86418 1.23221 1.00008 1.00839 0.93233 1.22630 0.97099 1.01165 0.95435 1.23527 0.96526 1.02431 0.97435 0.92903 0.94264 0.88760 0.91381 0.94884 0.89444 0.92373 0.92011 0.89090 0.89483 0.93921 0.93258 0.89155 0.89956 0.89841 0.89565 0.88475 0.90226 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.70 10.44 -148.98 -1.56 -18.25 16 3 C 0.06 2.64 6.24 71.98 0.45 3.09 16 4 C 0.12 5.85 5.26 86.38 0.45 6.30 16 5 N -0.44 -22.67 2.45 -635.53 -1.56 -24.23 16 6 C -0.34 -17.56 8.29 84.04 0.70 -16.86 16 7 H 0.09 4.43 7.21 -2.91 -0.02 4.41 16 8 C 0.01 0.52 4.95 84.93 0.42 0.94 16 9 N -0.90 -48.67 11.66 21.66 0.25 -48.42 16 10 Si 0.98 41.16 29.59 68.60 2.03 43.19 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 13 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 14 C 0.46 23.21 7.59 87.66 0.67 23.88 16 15 O -0.64 -33.73 15.65 -3.06 -0.05 -33.78 16 16 C -0.11 -4.52 4.80 29.85 0.14 -4.37 16 17 C 0.10 3.60 5.07 71.98 0.36 3.96 16 18 O -0.39 -13.42 10.36 -148.98 -1.54 -14.96 16 19 C 0.04 1.06 4.32 31.18 0.13 1.19 16 20 C -0.14 -2.79 7.91 31.12 0.25 -2.55 16 21 C -0.13 -2.11 8.08 31.12 0.25 -1.86 16 22 C -0.16 -3.61 7.92 31.18 0.25 -3.36 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 26 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 4.61 5.81 -2.38 -0.01 4.60 16 29 H 0.06 2.91 7.59 -2.39 -0.02 2.89 16 30 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 31 H 0.09 3.73 7.70 -2.39 -0.02 3.71 16 32 H 0.09 3.83 8.10 -2.39 -0.02 3.81 16 33 H 0.04 1.66 8.10 -2.38 -0.02 1.64 16 34 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 35 H 0.09 2.22 7.87 -2.39 -0.02 2.20 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -63.55 341.27 3.89 -59.67 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.99 Total: 24.42 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 5.32 Total: 12.36 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -1.31 Total: -72.64 kcal Atomic # 8 Polarization: -63.85 SS G_CDS: -3.15 Total: -66.99 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -63.55 3.89 -59.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716837273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.906 kcal (2) G-P(sol) polarization free energy of solvation -63.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds