Wall clock time and date at job start Mon Mar 30 2020 04:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00083 * 2 1 4 4 C 1.53001 * 109.46974 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47167 * 65.00223 * 4 3 2 6 6 C 1.46496 * 120.00044 * 270.00103 * 5 4 3 7 7 C 1.50708 * 109.46895 * 269.99706 * 6 5 4 8 8 H 1.07995 * 119.99617 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99745 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00261 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99512 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47106 * 90.00269 * 11 9 7 13 13 H 1.48498 * 109.46976 * 209.99990 * 11 9 7 14 14 H 1.48501 * 109.47348 * 330.00252 * 11 9 7 15 15 C 1.34778 * 120.00160 * 89.99251 * 5 4 3 16 16 O 1.21279 * 120.00520 * 179.97438 * 15 5 4 17 17 C 1.50705 * 119.99738 * 0.02562 * 15 5 4 18 18 O 1.42899 * 109.46942 * 179.97438 * 17 15 5 19 19 C 1.42902 * 113.99903 * 179.97438 * 18 17 15 20 20 C 1.53786 * 113.61284 * 209.99760 * 19 18 17 21 21 C 1.53781 * 87.17350 * 220.06071 * 20 19 18 22 22 C 1.53782 * 87.08260 * 25.39213 * 21 20 19 23 23 H 1.09000 * 109.47490 * 59.99873 * 1 2 3 24 24 H 1.09003 * 109.47399 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47178 * 299.99597 * 1 2 3 26 26 H 1.08998 * 109.46806 * 60.00384 * 3 2 1 27 27 H 1.08999 * 109.47166 * 300.00682 * 3 2 1 28 28 H 1.08996 * 109.47168 * 304.99675 * 4 3 2 29 29 H 1.09000 * 109.46787 * 184.99959 * 4 3 2 30 30 H 1.09000 * 109.47338 * 29.99906 * 6 5 4 31 31 H 1.09003 * 109.47343 * 150.00022 * 6 5 4 32 32 H 0.96997 * 120.00422 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.47087 * 60.00051 * 17 15 5 34 34 H 1.08997 * 109.47002 * 299.99406 * 17 15 5 35 35 H 1.08993 * 112.90736 * 341.24804 * 19 18 17 36 36 H 1.09002 * 113.61357 * 105.46987 * 20 19 18 37 37 H 1.09002 * 113.61608 * 334.65149 * 20 19 18 38 38 H 1.09001 * 113.61695 * 139.93969 * 21 20 19 39 39 H 1.08997 * 113.61223 * 270.84552 * 21 20 19 40 40 H 1.08997 * 113.61668 * 89.11298 * 22 21 20 41 41 H 1.08998 * 113.61674 * 219.93807 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1051 -0.8921 -1.3428 7 6 5.5010 -1.2979 -0.9450 8 1 6.2197 -0.5460 -0.6546 9 6 5.8602 -2.6290 -0.9519 10 7 4.9851 -3.5445 -1.3060 11 14 7.5901 -3.1320 -0.4581 12 1 7.6338 -3.3841 1.0046 13 1 7.9725 -4.3690 -1.1853 14 1 8.5393 -2.0427 -0.8013 15 6 4.2614 1.3337 -2.3218 16 8 4.6262 0.8204 -3.3583 17 6 4.1286 2.8320 -2.2290 18 8 4.4855 3.4203 -3.4814 19 6 4.3928 4.8462 -3.5012 20 6 4.0518 5.4221 -4.8858 21 6 5.0629 6.5411 -4.5851 22 6 5.7547 5.5523 -3.6319 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.6887 1.8463 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.8515 0.5682 0.8409 29 1 3.9785 2.1764 0.0889 30 1 3.3852 -1.3630 -0.6735 31 1 3.9119 -1.2114 -2.3670 32 1 5.2377 -4.4810 -1.3105 33 1 4.7912 3.2079 -1.4495 34 1 3.0981 3.0910 -1.9861 35 1 3.7710 5.2421 -2.6984 36 1 3.0237 5.7740 -4.9711 37 1 4.3481 4.7764 -5.7124 38 1 5.6739 6.8199 -5.4437 39 1 4.6246 7.4012 -4.0791 40 1 6.5172 4.9412 -4.1148 41 1 6.1026 6.0095 -2.7057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716909401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:49 Heat of formation + Delta-G solvation = -100.543914 kcal Electronic energy + Delta-G solvation = -21484.769605 eV Core-core repulsion = 18173.249963 eV Total energy + Delta-G solvation = -3311.519643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.54307 -38.74636 -37.48066 -35.71041 -34.72352 -32.62723 -29.63918 -28.58014 -26.43854 -25.87563 -25.71346 -24.50990 -22.72853 -22.38413 -19.84454 -18.48610 -17.27710 -16.59292 -16.43667 -16.16481 -15.70651 -15.32557 -15.11859 -15.06578 -14.56314 -14.40673 -13.74589 -13.52193 -12.92483 -12.51037 -12.45588 -12.18984 -11.90863 -11.80913 -11.69108 -11.60195 -11.30995 -11.20281 -10.89582 -10.83447 -10.74388 -10.50545 -10.36921 -10.07221 -9.53749 -9.47173 -9.35825 -8.77943 -8.32191 -7.59653 -5.93306 -3.97373 3.35864 3.37701 3.42903 3.44268 3.49141 4.03002 4.26230 4.48782 4.52673 4.57264 4.76050 4.77045 5.07290 5.10585 5.23202 5.29776 5.37033 5.40822 5.46758 5.49466 5.55476 5.56040 5.62312 5.66127 5.70268 5.74704 5.85338 5.86315 6.04998 6.19323 6.21768 7.14011 7.39475 7.40226 7.60274 7.66878 8.04385 8.35985 8.48811 9.00229 9.16347 9.66386 11.14802 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.005360 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.695952 B = 5222.483408 C = 6708.293620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.043 3.957 4 C 0.110 3.890 5 N -0.589 5.589 6 C 0.251 3.749 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.503 3.497 16 O -0.519 6.519 17 C 0.042 3.958 18 O -0.346 6.346 19 C 0.057 3.943 20 C -0.137 4.137 21 C -0.142 4.142 22 C -0.157 4.157 23 H 0.036 0.964 24 H 0.084 0.916 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.262 0.738 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 18.592 1.982 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.035 4.035 4 C -0.015 4.015 5 N -0.322 5.322 6 C 0.132 3.868 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.288 3.712 16 O -0.394 6.394 17 C -0.038 4.038 18 O -0.264 6.264 19 C -0.002 4.002 20 C -0.174 4.174 21 C -0.179 4.179 22 C -0.195 4.195 23 H 0.054 0.946 24 H 0.103 0.897 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.484 17.806 1.223 18.989 hybrid contribution 0.572 0.106 0.676 0.892 sum -5.912 17.912 1.900 18.958 Atomic orbital electron populations 1.22708 0.81994 1.02675 0.99097 1.88111 1.18761 1.26799 1.95120 1.23125 0.95354 0.85576 0.99459 1.21538 0.91214 0.98915 0.89844 1.48140 1.64756 1.09849 1.09487 1.19326 0.96772 0.71709 0.98961 1.21476 0.97472 0.92230 1.45312 0.92637 1.24910 0.97345 0.96412 0.95387 1.69941 1.34340 1.00941 1.48043 0.86533 0.84746 0.78061 0.78268 1.20726 1.21160 1.19976 1.19961 0.79220 0.87441 0.84580 1.90695 1.45111 1.74436 1.29165 1.22462 0.99855 0.93822 0.87628 1.88126 1.88200 1.18350 1.31684 1.23817 0.96996 0.81153 0.98198 1.23202 0.99455 0.97070 0.97683 1.22647 0.98686 0.96532 1.00053 1.23520 0.98040 0.97895 1.00042 0.94582 0.89702 0.94678 0.92996 0.93837 0.88690 0.90285 0.93478 0.94246 0.92854 0.91026 0.91396 0.89731 0.91197 0.88930 0.90835 0.90187 0.89001 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.35 9.53 -35.23 -0.34 -6.68 16 3 C 0.04 0.60 6.28 37.16 0.23 0.83 16 4 C 0.11 1.76 5.62 -4.04 -0.02 1.74 16 5 N -0.59 -12.85 2.42 -175.06 -0.42 -13.28 16 6 C 0.25 6.84 4.98 -5.19 -0.03 6.82 16 7 C -0.53 -15.39 9.39 -34.44 -0.32 -15.71 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 11 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.50 11.11 7.75 -10.98 -0.09 11.02 16 16 O -0.52 -14.23 16.08 -14.35 -0.23 -14.46 16 17 C 0.04 0.68 4.81 36.01 0.17 0.85 16 18 O -0.35 -5.91 9.89 -55.14 -0.55 -6.46 16 19 C 0.06 0.68 4.32 -25.82 -0.11 0.57 16 20 C -0.14 -1.44 7.91 -25.92 -0.20 -1.65 16 21 C -0.14 -1.24 8.08 -25.92 -0.21 -1.45 16 22 C -0.16 -1.69 7.92 -25.82 -0.20 -1.89 16 23 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.58 7.30 -51.93 -0.38 0.20 16 28 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 29 H 0.08 0.97 6.44 -51.93 -0.33 0.63 16 30 H 0.05 1.32 7.11 -51.93 -0.37 0.95 16 31 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.07 0.96 7.40 -51.93 -0.38 0.58 16 34 H 0.07 0.87 7.26 -51.93 -0.38 0.49 16 35 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -36.38 342.00 -7.26 -43.64 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.83 Total: -3.03 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 0.23 Total: 4.35 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.31 Total: -39.93 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.11 Total: -27.60 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.38 -7.26 -43.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716909401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.906 kcal (2) G-P(sol) polarization free energy of solvation -36.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds