Wall clock time and date at job start Mon Mar 30 2020 04:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00083 * 2 1 4 4 C 1.53001 * 109.46974 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47167 * 65.00223 * 4 3 2 6 6 C 1.46496 * 120.00044 * 270.00103 * 5 4 3 7 7 C 1.50708 * 109.46895 * 269.99706 * 6 5 4 8 8 H 1.07995 * 119.99617 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99745 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00261 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99512 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47106 * 90.00269 * 11 9 7 13 13 H 1.48498 * 109.46976 * 209.99990 * 11 9 7 14 14 H 1.48501 * 109.47348 * 330.00252 * 11 9 7 15 15 C 1.34778 * 120.00160 * 89.99251 * 5 4 3 16 16 O 1.21279 * 120.00520 * 179.97438 * 15 5 4 17 17 C 1.50705 * 119.99738 * 0.02562 * 15 5 4 18 18 O 1.42899 * 109.46942 * 179.97438 * 17 15 5 19 19 C 1.42902 * 113.99903 * 179.97438 * 18 17 15 20 20 C 1.53786 * 113.61284 * 209.99760 * 19 18 17 21 21 C 1.53781 * 87.17350 * 220.06071 * 20 19 18 22 22 C 1.53782 * 87.08260 * 25.39213 * 21 20 19 23 23 H 1.09000 * 109.47490 * 59.99873 * 1 2 3 24 24 H 1.09003 * 109.47399 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47178 * 299.99597 * 1 2 3 26 26 H 1.08998 * 109.46806 * 60.00384 * 3 2 1 27 27 H 1.08999 * 109.47166 * 300.00682 * 3 2 1 28 28 H 1.08996 * 109.47168 * 304.99675 * 4 3 2 29 29 H 1.09000 * 109.46787 * 184.99959 * 4 3 2 30 30 H 1.09000 * 109.47338 * 29.99906 * 6 5 4 31 31 H 1.09003 * 109.47343 * 150.00022 * 6 5 4 32 32 H 0.96997 * 120.00422 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.47087 * 60.00051 * 17 15 5 34 34 H 1.08997 * 109.47002 * 299.99406 * 17 15 5 35 35 H 1.08993 * 112.90736 * 341.24804 * 19 18 17 36 36 H 1.09002 * 113.61357 * 105.46987 * 20 19 18 37 37 H 1.09002 * 113.61608 * 334.65149 * 20 19 18 38 38 H 1.09001 * 113.61695 * 139.93969 * 21 20 19 39 39 H 1.08997 * 113.61223 * 270.84552 * 21 20 19 40 40 H 1.08997 * 113.61668 * 89.11298 * 22 21 20 41 41 H 1.08998 * 113.61674 * 219.93807 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1051 -0.8921 -1.3428 7 6 5.5010 -1.2979 -0.9450 8 1 6.2197 -0.5460 -0.6546 9 6 5.8602 -2.6290 -0.9519 10 7 4.9851 -3.5445 -1.3060 11 14 7.5901 -3.1320 -0.4581 12 1 7.6338 -3.3841 1.0046 13 1 7.9725 -4.3690 -1.1853 14 1 8.5393 -2.0427 -0.8013 15 6 4.2614 1.3337 -2.3218 16 8 4.6262 0.8204 -3.3583 17 6 4.1286 2.8320 -2.2290 18 8 4.4855 3.4203 -3.4814 19 6 4.3928 4.8462 -3.5012 20 6 4.0518 5.4221 -4.8858 21 6 5.0629 6.5411 -4.5851 22 6 5.7547 5.5523 -3.6319 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.6887 1.8463 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.8515 0.5682 0.8409 29 1 3.9785 2.1764 0.0889 30 1 3.3852 -1.3630 -0.6735 31 1 3.9119 -1.2114 -2.3670 32 1 5.2377 -4.4810 -1.3105 33 1 4.7912 3.2079 -1.4495 34 1 3.0981 3.0910 -1.9861 35 1 3.7710 5.2421 -2.6984 36 1 3.0237 5.7740 -4.9711 37 1 4.3481 4.7764 -5.7124 38 1 5.6739 6.8199 -5.4437 39 1 4.6246 7.4012 -4.0791 40 1 6.5172 4.9412 -4.1148 41 1 6.1026 6.0095 -2.7057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716909401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:49 Heat of formation + Delta-G solvation = -126.142042 kcal Electronic energy + Delta-G solvation = -21485.879623 eV Core-core repulsion = 18173.249963 eV Total energy + Delta-G solvation = -3312.629661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94236 -39.90358 -38.72838 -36.88161 -36.41994 -34.79245 -31.24372 -30.04893 -28.10049 -27.08210 -26.52873 -25.47551 -24.50604 -23.85639 -20.76017 -20.01677 -18.66173 -18.43384 -17.89275 -17.40359 -16.95326 -16.87812 -16.40562 -16.28272 -15.98952 -15.71846 -15.14084 -14.93384 -14.35963 -14.18940 -13.60467 -13.38282 -13.33262 -13.15138 -13.02689 -12.82254 -12.80466 -12.64825 -12.51276 -12.19907 -12.15841 -11.94289 -11.68838 -11.60874 -11.27622 -10.61970 -10.57563 -10.52482 -10.37241 -9.43649 -8.18920 -6.33949 1.36007 1.40087 1.50084 1.76736 2.02002 2.40491 2.97486 3.04075 3.10963 3.61632 3.68805 3.79333 3.97454 4.01508 4.05420 4.15351 4.28597 4.36750 4.45988 4.47344 4.53271 4.55632 4.62219 4.84113 4.87770 4.87885 4.96136 5.05341 5.06808 5.17231 5.24776 5.28904 5.43391 5.58121 5.86579 6.10311 6.27782 6.37252 6.74645 6.80911 7.30159 7.47772 8.88558 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.005360 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.695952 B = 5222.483408 C = 6708.293620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.043 3.957 4 C 0.101 3.899 5 N -0.592 5.592 6 C 0.272 3.728 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.005 3.995 10 N -0.929 5.929 11 Si 0.970 3.030 12 H -0.261 1.261 13 H -0.281 1.281 14 H -0.273 1.273 15 C 0.489 3.511 16 O -0.591 6.591 17 C 0.058 3.942 18 O -0.389 6.389 19 C 0.045 3.955 20 C -0.144 4.144 21 C -0.126 4.126 22 C -0.162 4.162 23 H 0.043 0.957 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.032 0.968 31 H -0.016 1.016 32 H 0.266 0.734 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.917 21.689 4.042 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.034 4.034 4 C -0.022 4.022 5 N -0.324 5.324 6 C 0.151 3.849 7 C -0.583 4.583 8 H 0.072 0.928 9 C -0.193 4.193 10 N -0.569 5.569 11 Si 0.794 3.206 12 H -0.186 1.186 13 H -0.207 1.207 14 H -0.198 1.198 15 C 0.277 3.723 16 O -0.472 6.472 17 C -0.021 4.021 18 O -0.307 6.307 19 C -0.012 4.012 20 C -0.181 4.181 21 C -0.163 4.163 22 C -0.200 4.200 23 H 0.062 0.938 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.146 0.854 30 H 0.050 0.950 31 H 0.002 0.998 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.137 0.863 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.597 20.956 3.335 22.222 hybrid contribution 0.532 -0.835 0.017 0.990 sum -6.065 20.121 3.352 21.281 Atomic orbital electron populations 1.22851 0.80029 1.03025 1.00864 1.88050 1.21173 1.29123 1.95535 1.23228 0.93296 0.84858 1.02020 1.21983 0.93431 1.00432 0.86319 1.48107 1.64519 1.07860 1.11936 1.18651 0.95677 0.75649 0.94965 1.21768 0.98260 0.92696 1.45576 0.92801 1.25895 1.01990 0.96369 0.95085 1.70079 1.36667 1.01410 1.48767 0.85390 0.78845 0.77512 0.78878 1.18567 1.20690 1.19782 1.21207 0.77426 0.90395 0.83242 1.90650 1.48333 1.76344 1.31837 1.22393 1.02983 0.88425 0.88338 1.88102 1.88763 1.21431 1.32449 1.24280 0.98373 0.78616 0.99912 1.23238 1.01064 0.97466 0.96363 1.22644 0.97540 0.96341 0.99768 1.23516 0.97090 0.98149 1.01261 0.93815 0.90297 0.91717 0.88469 0.92837 0.90161 0.85436 0.95038 0.99772 0.92514 0.87650 0.87353 0.86280 0.89435 0.91490 0.90500 0.87471 0.91663 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.93 16 2 O -0.42 -14.19 9.53 -148.98 -1.42 -15.61 16 3 C 0.04 1.08 6.28 71.98 0.45 1.53 16 4 C 0.10 3.04 5.62 86.38 0.49 3.52 16 5 N -0.59 -26.26 2.42 -826.16 -2.00 -28.26 16 6 C 0.27 15.67 4.98 85.64 0.43 16.09 16 7 C -0.54 -32.98 9.39 25.60 0.24 -32.74 16 8 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.01 0.32 5.46 84.66 0.46 0.78 16 10 N -0.93 -58.97 13.29 21.45 0.28 -58.69 16 11 Si 0.97 46.69 29.54 68.60 2.03 48.71 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 14 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 15 C 0.49 21.92 7.75 87.66 0.68 22.60 16 16 O -0.59 -34.34 16.08 16.01 0.26 -34.08 16 17 C 0.06 1.69 4.81 71.24 0.34 2.04 16 18 O -0.39 -12.90 9.89 -129.94 -1.28 -14.18 16 19 C 0.05 0.97 4.32 31.18 0.13 1.10 16 20 C -0.14 -2.79 7.91 31.12 0.25 -2.55 16 21 C -0.13 -1.84 8.08 31.12 0.25 -1.59 16 22 C -0.16 -3.14 7.92 31.18 0.25 -2.90 16 23 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.23 7.30 -2.39 -0.02 1.21 16 28 H 0.08 2.66 8.07 -2.39 -0.02 2.65 16 29 H 0.13 2.56 6.44 -2.39 -0.02 2.54 16 30 H 0.03 1.89 7.11 -2.39 -0.02 1.87 16 31 H -0.02 -1.07 7.42 -2.39 -0.02 -1.09 16 32 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.11 2.38 7.40 -2.39 -0.02 2.36 16 34 H 0.11 2.30 7.26 -2.39 -0.02 2.28 16 35 H 0.12 1.70 7.87 -2.39 -0.02 1.68 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -86.99 342.00 4.07 -82.92 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.99 Total: 9.36 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 5.22 Total: 9.83 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -1.71 Total: -86.95 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: -2.45 Total: -63.87 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -86.99 4.07 -82.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716909401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.227 kcal (2) G-P(sol) polarization free energy of solvation -86.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds