Wall clock time and date at job start Mon Mar 30 2020 04:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99847 * 2 1 4 4 C 1.53002 * 109.46859 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47480 * 63.52724 * 4 3 2 6 6 C 1.36936 * 119.99958 * 83.49087 * 5 4 3 7 7 H 1.08003 * 120.00020 * 168.12205 * 6 5 4 8 8 C 1.38813 * 120.00160 * 348.10966 * 6 5 4 9 9 N 1.31621 * 119.99467 * 8.38835 * 8 6 5 10 10 Si 1.86798 * 120.00229 * 188.38227 * 8 6 5 11 11 H 1.48498 * 109.47109 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46988 * 120.00507 * 10 8 6 13 13 H 1.48504 * 109.47172 * 240.00716 * 10 8 6 14 14 C 1.46498 * 120.00133 * 263.48545 * 5 4 3 15 15 C 1.53002 * 109.47499 * 264.34936 * 14 5 4 16 16 H 1.09003 * 110.06565 * 304.78746 * 15 14 5 17 17 C 1.56257 * 110.08996 * 183.19155 * 15 14 5 18 18 C 1.48191 * 102.04003 * 244.74526 * 17 15 14 19 19 H 1.08993 * 106.91093 * 77.56668 * 18 17 15 20 20 C 1.48500 * 133.11140 * 212.96398 * 18 17 15 21 21 O 1.46053 * 103.02120 * 158.99270 * 20 18 17 22 22 C 1.45199 * 109.19274 * 336.19953 * 21 20 18 23 23 C 1.52014 * 105.78721 * 352.64458 * 22 21 20 24 24 H 1.09005 * 111.51658 * 274.14110 * 23 22 21 25 25 O 1.41944 * 122.02650 * 138.78726 * 23 22 21 26 26 H 1.09003 * 109.47209 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47638 * 299.99828 * 1 2 3 28 28 H 1.09006 * 109.47335 * 60.00094 * 1 2 3 29 29 H 1.08991 * 109.47432 * 59.99887 * 3 2 1 30 30 H 1.09005 * 109.46824 * 299.99814 * 3 2 1 31 31 H 1.09005 * 109.47019 * 303.52484 * 4 3 2 32 32 H 1.09001 * 109.46826 * 183.52916 * 4 3 2 33 33 H 0.97006 * 119.99484 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47581 * 144.34605 * 14 5 4 35 35 H 1.09013 * 109.47122 * 24.34475 * 14 5 4 36 36 H 1.08992 * 110.94509 * 2.82273 * 17 15 14 37 37 H 1.09000 * 110.94023 * 126.52474 * 17 15 14 38 38 H 1.08992 * 110.73747 * 40.55750 * 20 18 17 39 39 H 1.09006 * 110.73151 * 277.42232 * 20 18 17 40 40 H 1.09002 * 110.18493 * 111.72210 * 22 21 20 41 41 H 1.08997 * 110.18246 * 233.48143 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9732 0.5325 -1.2373 6 6 4.1329 1.2693 -2.3804 7 1 4.6336 0.8387 -3.2349 8 6 3.6510 2.5697 -2.4409 9 7 3.1903 3.1520 -1.3542 10 14 3.6566 3.4932 -4.0647 11 1 4.2211 2.6229 -5.1272 12 1 2.2663 3.8728 -4.4230 13 1 4.4863 4.7180 -3.9348 14 6 4.2402 -0.9079 -1.2510 15 6 5.7360 -1.1514 -1.0409 16 1 6.3124 -0.6042 -1.7869 17 6 6.0492 -2.6795 -1.1337 18 6 6.5090 -2.9848 0.2416 19 1 5.6184 -3.0484 0.8668 20 6 7.5048 -3.9401 0.7901 21 8 7.8201 -3.3720 2.0982 22 6 7.5310 -1.9492 2.0828 23 6 7.1914 -1.6117 0.6400 24 1 8.0877 -1.3968 0.0581 25 8 6.1287 -0.7333 0.3025 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8463 0.8899 30 1 1.6885 1.8463 -0.8901 31 1 3.8531 0.5899 0.8559 32 1 3.9786 2.1784 0.0626 33 1 2.8539 4.0609 -1.3964 34 1 3.9355 -1.3248 -2.2109 35 1 3.6778 -1.3893 -0.4507 36 1 5.1512 -3.2472 -1.3769 37 1 6.8388 -2.8719 -1.8601 38 1 8.3936 -3.9752 0.1603 39 1 7.0690 -4.9337 0.8958 40 1 6.6815 -1.7309 2.7301 41 1 8.4050 -1.3843 2.4069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724645881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:11 Heat of formation + Delta-G solvation = -71.979399 kcal Electronic energy + Delta-G solvation = -22412.146693 eV Core-core repulsion = 19101.865701 eV Total energy + Delta-G solvation = -3310.280992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75013 -37.44954 -36.82888 -35.12358 -32.44755 -31.57428 -29.77987 -28.71022 -28.03215 -25.63424 -25.46986 -23.06574 -21.62179 -21.29430 -20.41542 -19.93646 -17.29960 -16.64999 -15.94624 -15.59121 -15.31067 -15.03924 -14.83771 -14.48030 -14.20358 -14.00000 -13.81260 -13.20430 -13.18079 -12.80741 -12.44375 -12.00295 -11.68152 -11.61363 -11.35662 -11.00508 -10.84905 -10.80202 -10.66759 -10.62132 -10.30671 -10.08967 -9.85447 -9.77513 -9.66296 -9.50756 -9.23994 -8.82142 -8.17299 -6.73230 -5.62526 -3.11626 3.37414 3.44154 3.45947 3.46654 3.76643 4.48294 4.56960 4.66842 4.98570 5.01955 5.11429 5.25760 5.31300 5.38554 5.46408 5.65334 5.66503 5.72511 5.85820 5.88601 5.95447 5.99440 6.04471 6.13263 6.19675 6.24232 6.36277 6.58107 6.64105 6.74401 6.85682 6.95176 7.18985 7.30992 7.59770 7.85467 7.89957 8.36503 8.52164 9.30744 9.91081 10.36802 11.30116 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.005769 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.456810 B = 4852.454990 C = 5594.008868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.402 6.402 3 C 0.058 3.942 4 C 0.182 3.818 5 N -0.589 5.589 6 C -0.228 4.228 7 H 0.073 0.927 8 C -0.014 4.014 9 N -0.916 5.916 10 Si 0.908 3.092 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.159 3.841 15 C 0.057 3.943 16 H 0.073 0.927 17 C -0.119 4.119 18 C -0.184 4.184 19 H 0.082 0.918 20 C 0.078 3.922 21 O -0.386 6.386 22 C 0.061 3.939 23 C 0.027 3.973 24 H 0.076 0.924 25 O -0.336 6.336 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.029 0.971 29 H 0.009 0.991 30 H 0.082 0.918 31 H 0.012 0.988 32 H 0.117 0.883 33 H 0.249 0.751 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 -10.433 2.932 11.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.322 6.322 3 C -0.019 4.019 4 C 0.057 3.943 5 N -0.308 5.308 6 C -0.357 4.357 7 H 0.091 0.909 8 C -0.208 4.208 9 N -0.566 5.566 10 Si 0.739 3.261 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.220 1.220 14 C 0.031 3.969 15 C -0.003 4.003 16 H 0.091 0.909 17 C -0.158 4.158 18 C -0.203 4.203 19 H 0.101 0.899 20 C 0.002 3.998 21 O -0.306 6.306 22 C -0.015 4.015 23 C -0.033 4.033 24 H 0.094 0.906 25 O -0.254 6.254 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.027 0.973 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.134 0.866 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.138 -10.333 3.239 11.593 hybrid contribution -0.361 0.866 -1.116 1.458 sum 3.777 -9.467 2.123 10.412 Atomic orbital electron populations 1.22466 0.84319 1.00417 0.98656 1.87858 1.16961 1.32092 1.95251 1.24064 0.97265 0.81011 0.99551 1.21113 0.89604 0.98961 0.84660 1.43944 1.77181 1.01584 1.08089 1.19435 1.29378 0.95334 0.91600 0.90897 1.24796 1.00954 0.97680 0.97371 1.70119 1.48257 1.13185 1.25084 0.86088 0.77176 0.79568 0.83219 1.20670 1.21842 1.21975 1.20873 0.89523 0.86856 0.99672 1.24900 1.01363 0.90468 0.83553 0.90888 1.21602 1.01648 0.97872 0.94653 1.22455 1.00633 0.97178 1.00001 0.89935 1.21759 0.96884 0.96473 0.84659 1.89298 1.88009 1.20944 1.32372 1.22574 1.01565 0.81943 0.95402 1.24084 0.92997 0.89745 0.96471 0.90590 1.89100 1.48519 1.54688 1.33137 0.91607 0.95800 0.95244 0.97274 0.89992 0.96954 0.86603 0.93998 0.92624 0.92554 0.89973 0.91191 0.91720 0.89316 0.90352 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 11.01 101.05 1.11 1.82 16 2 O -0.40 -9.13 10.40 -35.23 -0.37 -9.50 16 3 C 0.06 1.41 5.45 37.16 0.20 1.62 16 4 C 0.18 4.58 5.35 -4.04 -0.02 4.55 16 5 N -0.59 -14.57 2.46 -173.23 -0.43 -15.00 16 6 C -0.23 -6.03 9.75 -15.06 -0.15 -6.18 16 7 H 0.07 1.87 7.84 -52.48 -0.41 1.46 16 8 C -0.01 -0.37 5.13 -17.43 -0.09 -0.46 16 9 N -0.92 -25.10 7.41 55.49 0.41 -24.69 16 10 Si 0.91 21.45 29.56 -169.99 -5.03 16.42 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.16 3.29 5.13 -4.04 -0.02 3.27 16 15 C 0.06 1.02 3.63 -24.98 -0.09 0.93 16 16 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 17 C -0.12 -1.62 6.45 -27.32 -0.18 -1.80 16 18 C -0.18 -2.47 2.95 -92.16 -0.27 -2.74 16 19 H 0.08 1.24 7.94 -51.93 -0.41 0.83 16 20 C 0.08 0.91 7.59 34.96 0.27 1.17 16 21 O -0.39 -5.37 11.57 -35.23 -0.41 -5.78 16 22 C 0.06 0.84 7.61 36.66 0.28 1.12 16 23 C 0.03 0.40 3.97 -24.24 -0.10 0.31 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 25 O -0.34 -6.48 11.09 -35.23 -0.39 -6.87 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 2.21 5.99 -51.93 -0.31 1.90 16 31 H 0.01 0.30 7.89 -51.93 -0.41 -0.11 16 32 H 0.12 3.21 5.87 -51.93 -0.30 2.91 16 33 H 0.25 6.67 8.31 -40.82 -0.34 6.34 16 34 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 35 H 0.06 1.19 7.87 -51.92 -0.41 0.78 16 36 H 0.08 1.04 7.77 -51.93 -0.40 0.64 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -29.07 324.97 -7.23 -36.30 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.87 Total: 0.59 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 0.95 Total: 3.62 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -0.02 Total: -39.69 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -1.17 Total: -22.14 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.07 -7.23 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724645881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.681 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds