Wall clock time and date at job start Mon Mar 30 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99847 * 2 1 4 4 C 1.53002 * 109.46859 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47480 * 63.52724 * 4 3 2 6 6 C 1.36936 * 119.99958 * 83.49087 * 5 4 3 7 7 H 1.08003 * 120.00020 * 168.12205 * 6 5 4 8 8 C 1.38813 * 120.00160 * 348.10966 * 6 5 4 9 9 N 1.31621 * 119.99467 * 8.38835 * 8 6 5 10 10 Si 1.86798 * 120.00229 * 188.38227 * 8 6 5 11 11 H 1.48498 * 109.47109 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46988 * 120.00507 * 10 8 6 13 13 H 1.48504 * 109.47172 * 240.00716 * 10 8 6 14 14 C 1.46498 * 120.00133 * 263.48545 * 5 4 3 15 15 C 1.53002 * 109.47499 * 264.34936 * 14 5 4 16 16 H 1.09003 * 110.06565 * 304.78746 * 15 14 5 17 17 C 1.56257 * 110.08996 * 183.19155 * 15 14 5 18 18 C 1.48191 * 102.04003 * 244.74526 * 17 15 14 19 19 H 1.08993 * 106.91093 * 77.56668 * 18 17 15 20 20 C 1.48500 * 133.11140 * 212.96398 * 18 17 15 21 21 O 1.46053 * 103.02120 * 158.99270 * 20 18 17 22 22 C 1.45199 * 109.19274 * 336.19953 * 21 20 18 23 23 C 1.52014 * 105.78721 * 352.64458 * 22 21 20 24 24 H 1.09005 * 111.51658 * 274.14110 * 23 22 21 25 25 O 1.41944 * 122.02650 * 138.78726 * 23 22 21 26 26 H 1.09003 * 109.47209 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47638 * 299.99828 * 1 2 3 28 28 H 1.09006 * 109.47335 * 60.00094 * 1 2 3 29 29 H 1.08991 * 109.47432 * 59.99887 * 3 2 1 30 30 H 1.09005 * 109.46824 * 299.99814 * 3 2 1 31 31 H 1.09005 * 109.47019 * 303.52484 * 4 3 2 32 32 H 1.09001 * 109.46826 * 183.52916 * 4 3 2 33 33 H 0.97006 * 119.99484 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47581 * 144.34605 * 14 5 4 35 35 H 1.09013 * 109.47122 * 24.34475 * 14 5 4 36 36 H 1.08992 * 110.94509 * 2.82273 * 17 15 14 37 37 H 1.09000 * 110.94023 * 126.52474 * 17 15 14 38 38 H 1.08992 * 110.73747 * 40.55750 * 20 18 17 39 39 H 1.09006 * 110.73151 * 277.42232 * 20 18 17 40 40 H 1.09002 * 110.18493 * 111.72210 * 22 21 20 41 41 H 1.08997 * 110.18246 * 233.48143 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9732 0.5325 -1.2373 6 6 4.1329 1.2693 -2.3804 7 1 4.6336 0.8387 -3.2349 8 6 3.6510 2.5697 -2.4409 9 7 3.1903 3.1520 -1.3542 10 14 3.6566 3.4932 -4.0647 11 1 4.2211 2.6229 -5.1272 12 1 2.2663 3.8728 -4.4230 13 1 4.4863 4.7180 -3.9348 14 6 4.2402 -0.9079 -1.2510 15 6 5.7360 -1.1514 -1.0409 16 1 6.3124 -0.6042 -1.7869 17 6 6.0492 -2.6795 -1.1337 18 6 6.5090 -2.9848 0.2416 19 1 5.6184 -3.0484 0.8668 20 6 7.5048 -3.9401 0.7901 21 8 7.8201 -3.3720 2.0982 22 6 7.5310 -1.9492 2.0828 23 6 7.1914 -1.6117 0.6400 24 1 8.0877 -1.3968 0.0581 25 8 6.1287 -0.7333 0.3025 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8463 0.8899 30 1 1.6885 1.8463 -0.8901 31 1 3.8531 0.5899 0.8559 32 1 3.9786 2.1784 0.0626 33 1 2.8539 4.0609 -1.3964 34 1 3.9355 -1.3248 -2.2109 35 1 3.6778 -1.3893 -0.4507 36 1 5.1512 -3.2472 -1.3769 37 1 6.8388 -2.8719 -1.8601 38 1 8.3936 -3.9752 0.1603 39 1 7.0690 -4.9337 0.8958 40 1 6.6815 -1.7309 2.7301 41 1 8.4050 -1.3843 2.4069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724645881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:10 Heat of formation + Delta-G solvation = -91.242926 kcal Electronic energy + Delta-G solvation = -22412.982022 eV Core-core repulsion = 19101.865701 eV Total energy + Delta-G solvation = -3311.116321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.92934 -38.99389 -38.33668 -36.92158 -33.81560 -33.24461 -31.37952 -30.20403 -29.36794 -27.22181 -27.06306 -24.81924 -23.00565 -22.64157 -21.98909 -21.33710 -18.88052 -18.18761 -17.30239 -17.03651 -16.80469 -16.62732 -16.25158 -16.12056 -15.68804 -15.53426 -15.24265 -14.83744 -14.59863 -14.34178 -13.60522 -13.39848 -13.31733 -12.92165 -12.83095 -12.72940 -12.64556 -12.46089 -12.37668 -12.04659 -11.81089 -11.78784 -11.65165 -11.46738 -11.11944 -10.76036 -10.69835 -10.54169 -10.07335 -8.68403 -7.65206 -5.15051 1.49063 1.51148 1.59611 2.27206 2.55285 2.76894 3.28543 3.36738 3.41207 3.55519 3.67481 3.96991 4.01053 4.20568 4.23361 4.34987 4.49101 4.53240 4.59828 4.65737 4.68967 4.75284 4.78171 4.79809 4.82234 4.91836 4.95654 5.00636 5.05884 5.11531 5.19217 5.37029 5.57432 5.61742 5.82308 5.86344 6.02285 6.41554 6.65639 7.26901 7.95772 8.39074 9.26447 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.005769 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.456810 B = 4852.454990 C = 5594.008868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.419 6.419 3 C 0.076 3.924 4 C 0.191 3.809 5 N -0.602 5.602 6 C -0.237 4.237 7 H 0.078 0.922 8 C -0.062 4.062 9 N -0.935 5.935 10 Si 0.968 3.032 11 H -0.270 1.270 12 H -0.296 1.296 13 H -0.297 1.297 14 C 0.160 3.840 15 C 0.059 3.941 16 H 0.058 0.942 17 C -0.106 4.106 18 C -0.166 4.166 19 H 0.062 0.938 20 C 0.079 3.921 21 O -0.398 6.398 22 C 0.065 3.935 23 C 0.013 3.987 24 H 0.086 0.914 25 O -0.371 6.371 26 H 0.097 0.903 27 H 0.039 0.961 28 H 0.026 0.974 29 H 0.013 0.987 30 H 0.055 0.945 31 H 0.008 0.992 32 H 0.087 0.913 33 H 0.243 0.757 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 -12.343 2.275 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.338 6.338 3 C -0.002 4.002 4 C 0.066 3.934 5 N -0.323 5.323 6 C -0.367 4.367 7 H 0.096 0.904 8 C -0.254 4.254 9 N -0.586 5.586 10 Si 0.798 3.202 11 H -0.195 1.195 12 H -0.224 1.224 13 H -0.225 1.225 14 C 0.033 3.967 15 C 0.000 4.000 16 H 0.076 0.924 17 C -0.144 4.144 18 C -0.185 4.185 19 H 0.080 0.920 20 C 0.004 3.996 21 O -0.319 6.319 22 C -0.011 4.011 23 C -0.046 4.046 24 H 0.104 0.896 25 O -0.291 6.291 26 H 0.115 0.885 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.105 0.895 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.711 -12.286 2.579 13.409 hybrid contribution -0.566 1.409 -0.863 1.746 sum 4.145 -10.877 1.717 11.766 Atomic orbital electron populations 1.22717 0.81710 1.02703 0.99233 1.87802 1.19781 1.30905 1.95342 1.23627 0.96721 0.81552 0.98298 1.20800 0.90299 0.97336 0.85009 1.44082 1.77657 1.03134 1.07402 1.19706 1.29113 0.95696 0.92196 0.90410 1.25470 1.01381 0.98633 0.99962 1.70307 1.48933 1.12961 1.26358 0.85157 0.76510 0.78188 0.80343 1.19460 1.22375 1.22500 1.20971 0.91394 0.84601 0.99710 1.24657 0.98784 0.93576 0.82995 0.92414 1.21498 1.03144 0.94254 0.95481 1.22404 1.00060 0.96724 0.99329 0.91996 1.21971 0.97236 0.96630 0.83763 1.89285 1.88094 1.20743 1.33774 1.22556 1.01883 0.82318 0.94366 1.24321 0.92493 0.90045 0.97752 0.89584 1.89053 1.50114 1.56309 1.33588 0.88494 0.94249 0.95576 0.96917 0.92726 0.97354 0.89525 0.94644 0.91849 0.93360 0.88703 0.88544 0.89547 0.87152 0.91505 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 11.01 113.37 1.25 2.39 16 2 O -0.42 -18.89 10.40 -148.98 -1.55 -20.44 16 3 C 0.08 3.74 5.45 71.98 0.39 4.13 16 4 C 0.19 9.92 5.35 86.38 0.46 10.38 16 5 N -0.60 -30.31 2.46 -701.98 -1.73 -32.03 16 6 C -0.24 -12.66 9.75 84.03 0.82 -11.84 16 7 H 0.08 3.98 7.84 -2.91 -0.02 3.96 16 8 C -0.06 -3.38 5.13 84.86 0.44 -2.94 16 9 N -0.93 -52.57 7.41 21.65 0.16 -52.41 16 10 Si 0.97 44.49 29.56 68.60 2.03 46.52 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 14 C 0.16 6.61 5.13 86.38 0.44 7.05 16 15 C 0.06 2.10 3.63 31.73 0.12 2.21 16 16 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 17 C -0.11 -2.61 6.45 30.21 0.19 -2.41 16 18 C -0.17 -4.10 2.95 -11.79 -0.03 -4.13 16 19 H 0.06 1.78 7.94 -2.39 -0.02 1.77 16 20 C 0.08 1.58 7.59 70.56 0.54 2.12 16 21 O -0.40 -10.21 11.57 -148.98 -1.72 -11.94 16 22 C 0.07 1.71 7.61 71.66 0.55 2.25 16 23 C 0.01 0.37 3.97 32.21 0.13 0.50 16 24 H 0.09 2.31 8.14 -2.38 -0.02 2.30 16 25 O -0.37 -14.39 11.09 -148.96 -1.65 -16.05 16 26 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 3.02 5.99 -2.38 -0.01 3.01 16 31 H 0.01 0.42 7.89 -2.38 -0.02 0.40 16 32 H 0.09 5.01 5.87 -2.39 -0.01 4.99 16 33 H 0.24 13.41 8.31 -92.70 -0.77 12.64 16 34 H 0.06 2.48 8.09 -2.39 -0.02 2.46 16 35 H 0.05 2.05 7.87 -2.38 -0.02 2.03 16 36 H 0.09 2.14 7.77 -2.39 -0.02 2.12 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -63.30 324.97 1.81 -61.49 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.99 Total: 15.14 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 5.28 Total: 9.71 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -1.57 Total: -84.44 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -4.93 Total: -48.42 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -63.30 1.81 -61.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724645881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.749 kcal (2) G-P(sol) polarization free energy of solvation -63.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds