Wall clock time and date at job start Mon Mar 30 2020 05:39:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.42906 * 113.99684 * 2 1
4 4 H 1.08992 * 109.61424 * 330.22125 * 3 2 1
5 5 C 1.53181 * 109.54132 * 90.44338 * 3 2 1
6 6 C 1.53088 * 109.16708 * 62.88493 * 5 3 2
7 7 O 1.42911 * 109.41269 * 57.60434 * 6 5 3
8 8 C 1.42904 * 114.09687 * 298.84358 * 7 6 5
9 9 C 1.53090 * 109.41770 * 61.16072 * 8 7 6
10 10 H 1.09001 * 109.52305 * 62.35756 * 9 8 7
11 11 N 1.46898 * 109.52367 * 182.48547 * 9 8 7
12 12 C 1.46906 * 110.99888 * 274.99899 * 11 9 8
13 13 C 1.52993 * 109.47378 * 180.02562 * 12 11 9
14 14 C 1.53008 * 109.46733 * 299.99953 * 13 12 11
15 15 C 1.53005 * 109.47212 * 59.99438 * 13 12 11
16 16 C 1.52996 * 109.47473 * 179.97438 * 13 12 11
17 17 C 1.50699 * 109.47239 * 179.97438 * 16 13 12
18 18 H 1.08003 * 119.99960 * 0.02562 * 17 16 13
19 19 C 1.37882 * 119.99798 * 179.97438 * 17 16 13
20 20 N 1.31508 * 120.00253 * 0.02562 * 19 17 16
21 21 Si 1.86799 * 119.99629 * 180.02562 * 19 17 16
22 22 H 1.48500 * 109.46921 * 90.00726 * 21 19 17
23 23 H 1.48500 * 109.47163 * 210.00394 * 21 19 17
24 24 H 1.48494 * 109.47628 * 330.00590 * 21 19 17
25 25 H 1.08993 * 109.47124 * 300.00296 * 1 2 3
26 26 H 1.08995 * 109.46561 * 60.00356 * 1 2 3
27 27 H 1.08995 * 109.46898 * 180.02562 * 1 2 3
28 28 H 1.08995 * 109.52032 * 302.97657 * 5 3 2
29 29 H 1.09004 * 109.51439 * 182.79080 * 5 3 2
30 30 H 1.09005 * 109.47925 * 297.62667 * 6 5 3
31 31 H 1.08996 * 109.49291 * 177.59257 * 6 5 3
32 32 H 1.08999 * 109.48208 * 301.17184 * 8 7 6
33 33 H 1.09004 * 109.47882 * 181.14350 * 8 7 6
34 34 H 1.00901 * 111.00121 * 151.04485 * 11 9 8
35 35 H 1.09004 * 109.47040 * 299.99934 * 12 11 9
36 36 H 1.09000 * 109.47033 * 59.99886 * 12 11 9
37 37 H 1.09002 * 109.47288 * 60.00045 * 14 13 12
38 38 H 1.09001 * 109.46630 * 179.97438 * 14 13 12
39 39 H 1.09000 * 109.47188 * 299.99959 * 14 13 12
40 40 H 1.08996 * 109.46524 * 60.00440 * 15 13 12
41 41 H 1.09001 * 109.46962 * 180.02562 * 15 13 12
42 42 H 1.08992 * 109.47457 * 300.00343 * 15 13 12
43 43 H 1.08996 * 109.47261 * 300.00171 * 16 13 12
44 44 H 1.09000 * 109.46870 * 59.99782 * 16 13 12
45 45 H 0.97001 * 120.00663 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 1 1.3450 2.0022 -0.5099
5 6 2.2288 1.7691 1.4435
6 6 3.2253 0.8296 2.1277
7 8 4.4485 0.8150 1.3888
8 6 4.3135 0.3451 0.0460
9 6 3.3607 1.2651 -0.7218
10 1 3.7813 2.2698 -0.7661
11 7 3.1736 0.7507 -2.0849
12 6 4.2431 1.2198 -2.9761
13 6 4.0142 0.6653 -4.3835
14 6 4.0234 -0.8640 -4.3368
15 6 2.6621 1.1512 -4.9095
16 6 5.1277 1.1544 -5.3118
17 6 4.9025 0.6077 -6.6979
18 1 4.0501 -0.0251 -6.8970
19 6 5.7840 0.9161 -7.7123
20 7 6.8216 1.6870 -7.4700
21 14 5.5045 0.2389 -9.4306
22 1 4.6668 1.1884 -10.2065
23 1 6.8121 0.0619 -10.1117
24 1 4.8123 -1.0717 -9.3397
25 1 -0.3633 0.5138 0.8899
26 1 -0.3632 0.5138 -0.8900
27 1 -0.3633 -1.0276 0.0005
28 1 1.2805 1.7478 1.9804
29 1 2.6260 2.7842 1.4438
30 1 2.8100 -0.1776 2.1630
31 1 3.4175 1.1794 3.1419
32 1 3.9125 -0.6684 0.0542
33 1 5.2896 0.3460 -0.4393
34 1 2.2657 1.0034 -2.4454
35 1 4.2362 2.3093 -3.0097
36 1 5.2064 0.8739 -2.6011
37 1 3.2299 -1.2122 -3.6755
38 1 3.8599 -1.2591 -5.3394
39 1 4.9867 -1.2103 -3.9620
40 1 2.6555 2.2407 -4.9427
41 1 2.4988 0.7558 -5.9120
42 1 1.8686 0.8031 -4.2483
43 1 5.1207 2.2439 -5.3450
44 1 6.0911 0.8085 -4.9372
45 1 7.4420 1.9037 -8.1835
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000724883529.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:39:21
Heat of formation + Delta-G solvation = -106.934103 kcal
Electronic energy + Delta-G solvation = -22303.850581 eV
Core-core repulsion = 19127.886934 eV
Total energy + Delta-G solvation = -3175.963647 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 271.193 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.03661 -37.44665 -37.17991 -34.41037 -32.35649 -31.89951 -29.23490 -26.91830
-26.68969 -26.32312 -25.31563 -24.73917 -23.09616 -21.75601 -20.16071 -17.91736
-16.75624 -16.58545 -16.20747 -16.08027 -15.69063 -15.21533 -14.72257 -14.46006
-14.23485 -13.86438 -13.52652 -13.16885 -13.00208 -12.62021 -12.46728 -12.35852
-11.98738 -11.90479 -11.69124 -11.41673 -11.19191 -10.94730 -10.85641 -10.75625
-10.47738 -10.40735 -10.20305 -10.10805 -9.75054 -9.67018 -9.49710 -8.98728
-8.80255 -8.29880 -8.07460 -5.94336 -3.94404 3.34423 3.41175 3.44208
3.56397 3.81584 4.34014 4.50777 4.52983 4.71741 4.77992 5.01248
5.10152 5.16844 5.20279 5.33574 5.41486 5.50228 5.52336 5.53762
5.63955 5.70180 5.75705 5.83772 5.95713 5.99669 6.13462 6.25677
6.34386 6.52524 6.70016 6.79842 6.85494 7.00383 7.10385 7.22617
7.29472 7.30793 7.44875 7.66211 7.73027 7.87864 8.06018 8.50495
9.10992 9.68320 11.17356
Molecular weight = 271.19amu
Principal moments of inertia in cm(-1)
A = 0.033427 B = 0.003896 C = 0.003668
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 837.453590 B = 7184.969356 C = 7631.943887
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.364 6.364
3 C 0.085 3.915
4 H 0.061 0.939
5 C -0.176 4.176
6 C 0.066 3.934
7 O -0.386 6.386
8 C 0.076 3.924
9 C 0.059 3.941
10 H 0.059 0.941
11 N -0.669 5.669
12 C 0.068 3.932
13 C -0.057 4.057
14 C -0.116 4.116
15 C -0.129 4.129
16 C 0.034 3.966
17 C -0.506 4.506
18 H 0.059 0.941
19 C 0.055 3.945
20 N -0.898 5.898
21 Si 0.887 3.113
22 H -0.282 1.282
23 H -0.288 1.288
24 H -0.274 1.274
25 H 0.035 0.965
26 H 0.041 0.959
27 H 0.085 0.915
28 H 0.074 0.926
29 H 0.079 0.921
30 H 0.057 0.943
31 H 0.088 0.912
32 H 0.067 0.933
33 H 0.093 0.907
34 H 0.340 0.660
35 H 0.023 0.977
36 H 0.067 0.933
37 H 0.044 0.956
38 H 0.053 0.947
39 H 0.039 0.961
40 H 0.039 0.961
41 H 0.064 0.936
42 H 0.032 0.968
43 H 0.012 0.988
44 H 0.015 0.985
45 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.787 -0.489 17.750 21.313
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.282 6.282
3 C 0.027 3.973
4 H 0.079 0.921
5 C -0.214 4.214
6 C -0.011 4.011
7 O -0.304 6.304
8 C -0.002 4.002
9 C -0.052 4.052
10 H 0.077 0.923
11 N -0.303 5.303
12 C -0.061 4.061
13 C -0.058 4.058
14 C -0.173 4.173
15 C -0.186 4.186
16 C -0.004 4.004
17 C -0.545 4.545
18 H 0.077 0.923
19 C -0.146 4.146
20 N -0.538 5.538
21 Si 0.715 3.285
22 H -0.209 1.209
23 H -0.214 1.214
24 H -0.199 1.199
25 H 0.054 0.946
26 H 0.060 0.940
27 H 0.104 0.896
28 H 0.092 0.908
29 H 0.098 0.902
30 H 0.075 0.925
31 H 0.106 0.894
32 H 0.085 0.915
33 H 0.112 0.888
34 H 0.160 0.840
35 H 0.041 0.959
36 H 0.086 0.914
37 H 0.063 0.937
38 H 0.072 0.928
39 H 0.058 0.942
40 H 0.058 0.942
41 H 0.083 0.917
42 H 0.051 0.949
43 H 0.030 0.970
44 H 0.034 0.966
45 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -11.036 -1.125 17.883 21.045
hybrid contribution -0.825 0.954 -1.294 1.807
sum -11.861 -0.171 16.589 20.394
Atomic orbital electron populations
1.22778 0.81608 1.02716 0.99532 1.88021 1.18949 1.26461 1.94809
1.22329 0.94655 0.85394 0.94939 0.92054 1.22683 1.00824 1.00977
0.96941 1.22423 0.85015 0.98859 0.94783 1.87925 1.30705 1.87041
1.24713 1.22510 0.99780 0.97129 0.80746 1.22222 0.94302 0.97960
0.90726 0.92319 1.60410 1.06393 1.63272 1.00182 1.22226 0.94087
0.96339 0.93429 1.20619 0.97138 0.95844 0.92169 1.21599 1.00078
0.94944 1.00708 1.21766 0.95961 0.99711 1.01157 1.19124 0.92197
0.95935 0.93138 1.21240 1.09476 1.29788 0.93975 0.92305 1.25012
0.95359 0.95425 0.98780 1.69963 1.13963 1.37202 1.32629 0.86670
0.77397 0.79402 0.84988 1.20869 1.21373 1.19904 0.94637 0.94040
0.89628 0.90752 0.90246 0.92490 0.89356 0.91493 0.88846 0.83992
0.95873 0.91430 0.93740 0.92771 0.94160 0.94191 0.91701 0.94894
0.96972 0.96635 0.93176
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.26 10.83 101.05 1.09 1.35 16
2 O -0.36 -4.23 9.12 -35.23 -0.32 -4.55 16
3 C 0.09 0.93 2.28 -26.55 -0.06 0.87 16
4 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16
5 C -0.18 -1.63 5.83 -26.59 -0.16 -1.79 16
6 C 0.07 0.68 6.69 37.20 0.25 0.93 16
7 O -0.39 -5.15 10.77 -35.23 -0.38 -5.53 16
8 C 0.08 1.03 6.18 37.20 0.23 1.26 16
9 C 0.06 0.76 2.48 -67.58 -0.17 0.59 16
10 H 0.06 0.79 7.80 -51.93 -0.41 0.38 16
11 N -0.67 -9.78 5.34 -106.58 -0.57 -10.35 16
12 C 0.07 1.17 4.45 -3.82 -0.02 1.15 16
13 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16
14 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16
15 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16
16 C 0.03 0.85 4.04 -27.89 -0.11 0.73 16
17 C -0.51 -13.89 7.65 -34.44 -0.26 -14.15 16
18 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16
19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16
20 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16
21 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16
22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
25 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16
26 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16
27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
28 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16
29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
30 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16
31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16
32 H 0.07 0.96 7.82 -51.93 -0.41 0.56 16
33 H 0.09 1.32 7.52 -51.93 -0.39 0.93 16
34 H 0.34 4.81 6.41 -39.29 -0.25 4.56 16
35 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16
36 H 0.07 1.21 7.49 -51.93 -0.39 0.82 16
37 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16
38 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16
39 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16
40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
41 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16
42 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16
43 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16
44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
LS Contribution 344.73 15.07 5.20 5.20
Total: -1.00 -29.97 344.73 -7.28 -37.26
By element:
Atomic # 1 Polarization: 8.56 SS G_CDS: -8.12 Total: 0.43 kcal
Atomic # 6 Polarization: -14.08 SS G_CDS: 1.20 Total: -12.88 kcal
Atomic # 7 Polarization: -36.74 SS G_CDS: 0.17 Total: -36.57 kcal
Atomic # 8 Polarization: -9.38 SS G_CDS: -0.70 Total: -10.08 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 5.20 Total: 5.20 kcal
Total: -29.97 -7.28 -37.26 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724883529.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.678 kcal
(2) G-P(sol) polarization free energy of solvation -29.973 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.651 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.934 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds