Wall clock time and date at job start Mon Mar 30 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42906 * 113.99684 * 2 1 4 4 H 1.08992 * 109.61424 * 330.22125 * 3 2 1 5 5 C 1.53181 * 109.54132 * 90.44338 * 3 2 1 6 6 C 1.53088 * 109.16708 * 62.88493 * 5 3 2 7 7 O 1.42911 * 109.41269 * 57.60434 * 6 5 3 8 8 C 1.42904 * 114.09687 * 298.84358 * 7 6 5 9 9 C 1.53090 * 109.41770 * 61.16072 * 8 7 6 10 10 H 1.09001 * 109.52305 * 62.35756 * 9 8 7 11 11 N 1.46898 * 109.52367 * 182.48547 * 9 8 7 12 12 C 1.46906 * 110.99888 * 274.99899 * 11 9 8 13 13 C 1.52993 * 109.47378 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.46733 * 299.99953 * 13 12 11 15 15 C 1.53005 * 109.47212 * 59.99438 * 13 12 11 16 16 C 1.52996 * 109.47473 * 179.97438 * 13 12 11 17 17 C 1.50699 * 109.47239 * 179.97438 * 16 13 12 18 18 H 1.08003 * 119.99960 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99798 * 179.97438 * 17 16 13 20 20 N 1.31508 * 120.00253 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99629 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46921 * 90.00726 * 21 19 17 23 23 H 1.48500 * 109.47163 * 210.00394 * 21 19 17 24 24 H 1.48494 * 109.47628 * 330.00590 * 21 19 17 25 25 H 1.08993 * 109.47124 * 300.00296 * 1 2 3 26 26 H 1.08995 * 109.46561 * 60.00356 * 1 2 3 27 27 H 1.08995 * 109.46898 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.52032 * 302.97657 * 5 3 2 29 29 H 1.09004 * 109.51439 * 182.79080 * 5 3 2 30 30 H 1.09005 * 109.47925 * 297.62667 * 6 5 3 31 31 H 1.08996 * 109.49291 * 177.59257 * 6 5 3 32 32 H 1.08999 * 109.48208 * 301.17184 * 8 7 6 33 33 H 1.09004 * 109.47882 * 181.14350 * 8 7 6 34 34 H 1.00901 * 111.00121 * 151.04485 * 11 9 8 35 35 H 1.09004 * 109.47040 * 299.99934 * 12 11 9 36 36 H 1.09000 * 109.47033 * 59.99886 * 12 11 9 37 37 H 1.09002 * 109.47288 * 60.00045 * 14 13 12 38 38 H 1.09001 * 109.46630 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47188 * 299.99959 * 14 13 12 40 40 H 1.08996 * 109.46524 * 60.00440 * 15 13 12 41 41 H 1.09001 * 109.46962 * 180.02562 * 15 13 12 42 42 H 1.08992 * 109.47457 * 300.00343 * 15 13 12 43 43 H 1.08996 * 109.47261 * 300.00171 * 16 13 12 44 44 H 1.09000 * 109.46870 * 59.99782 * 16 13 12 45 45 H 0.97001 * 120.00663 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 2.0022 -0.5099 5 6 2.2288 1.7691 1.4435 6 6 3.2253 0.8296 2.1277 7 8 4.4485 0.8150 1.3888 8 6 4.3135 0.3451 0.0460 9 6 3.3607 1.2651 -0.7218 10 1 3.7813 2.2698 -0.7661 11 7 3.1736 0.7507 -2.0849 12 6 4.2431 1.2198 -2.9761 13 6 4.0142 0.6653 -4.3835 14 6 4.0234 -0.8640 -4.3368 15 6 2.6621 1.1512 -4.9095 16 6 5.1277 1.1544 -5.3118 17 6 4.9025 0.6077 -6.6979 18 1 4.0501 -0.0251 -6.8970 19 6 5.7840 0.9161 -7.7123 20 7 6.8216 1.6870 -7.4700 21 14 5.5045 0.2389 -9.4306 22 1 4.6668 1.1884 -10.2065 23 1 6.8121 0.0619 -10.1117 24 1 4.8123 -1.0717 -9.3397 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.2805 1.7478 1.9804 29 1 2.6260 2.7842 1.4438 30 1 2.8100 -0.1776 2.1630 31 1 3.4175 1.1794 3.1419 32 1 3.9125 -0.6684 0.0542 33 1 5.2896 0.3460 -0.4393 34 1 2.2657 1.0034 -2.4454 35 1 4.2362 2.3093 -3.0097 36 1 5.2064 0.8739 -2.6011 37 1 3.2299 -1.2122 -3.6755 38 1 3.8599 -1.2591 -5.3394 39 1 4.9867 -1.2103 -3.9620 40 1 2.6555 2.2407 -4.9427 41 1 2.4988 0.7558 -5.9120 42 1 1.8686 0.8031 -4.2483 43 1 5.1207 2.2439 -5.3450 44 1 6.0911 0.8085 -4.9372 45 1 7.4420 1.9037 -8.1835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724883529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:21 Heat of formation + Delta-G solvation = -106.934103 kcal Electronic energy + Delta-G solvation = -22303.850581 eV Core-core repulsion = 19127.886934 eV Total energy + Delta-G solvation = -3175.963647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03661 -37.44665 -37.17991 -34.41037 -32.35649 -31.89951 -29.23490 -26.91830 -26.68969 -26.32312 -25.31563 -24.73917 -23.09616 -21.75601 -20.16071 -17.91736 -16.75624 -16.58545 -16.20747 -16.08027 -15.69063 -15.21533 -14.72257 -14.46006 -14.23485 -13.86438 -13.52652 -13.16885 -13.00208 -12.62021 -12.46728 -12.35852 -11.98738 -11.90479 -11.69124 -11.41673 -11.19191 -10.94730 -10.85641 -10.75625 -10.47738 -10.40735 -10.20305 -10.10805 -9.75054 -9.67018 -9.49710 -8.98728 -8.80255 -8.29880 -8.07460 -5.94336 -3.94404 3.34423 3.41175 3.44208 3.56397 3.81584 4.34014 4.50777 4.52983 4.71741 4.77992 5.01248 5.10152 5.16844 5.20279 5.33574 5.41486 5.50228 5.52336 5.53762 5.63955 5.70180 5.75705 5.83772 5.95713 5.99669 6.13462 6.25677 6.34386 6.52524 6.70016 6.79842 6.85494 7.00383 7.10385 7.22617 7.29472 7.30793 7.44875 7.66211 7.73027 7.87864 8.06018 8.50495 9.10992 9.68320 11.17356 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.033427 B = 0.003896 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.453590 B = 7184.969356 C = 7631.943887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.085 3.915 4 H 0.061 0.939 5 C -0.176 4.176 6 C 0.066 3.934 7 O -0.386 6.386 8 C 0.076 3.924 9 C 0.059 3.941 10 H 0.059 0.941 11 N -0.669 5.669 12 C 0.068 3.932 13 C -0.057 4.057 14 C -0.116 4.116 15 C -0.129 4.129 16 C 0.034 3.966 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.340 0.660 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.012 0.988 44 H 0.015 0.985 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.787 -0.489 17.750 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.027 3.973 4 H 0.079 0.921 5 C -0.214 4.214 6 C -0.011 4.011 7 O -0.304 6.304 8 C -0.002 4.002 9 C -0.052 4.052 10 H 0.077 0.923 11 N -0.303 5.303 12 C -0.061 4.061 13 C -0.058 4.058 14 C -0.173 4.173 15 C -0.186 4.186 16 C -0.004 4.004 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.160 0.840 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.030 0.970 44 H 0.034 0.966 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.036 -1.125 17.883 21.045 hybrid contribution -0.825 0.954 -1.294 1.807 sum -11.861 -0.171 16.589 20.394 Atomic orbital electron populations 1.22778 0.81608 1.02716 0.99532 1.88021 1.18949 1.26461 1.94809 1.22329 0.94655 0.85394 0.94939 0.92054 1.22683 1.00824 1.00977 0.96941 1.22423 0.85015 0.98859 0.94783 1.87925 1.30705 1.87041 1.24713 1.22510 0.99780 0.97129 0.80746 1.22222 0.94302 0.97960 0.90726 0.92319 1.60410 1.06393 1.63272 1.00182 1.22226 0.94087 0.96339 0.93429 1.20619 0.97138 0.95844 0.92169 1.21599 1.00078 0.94944 1.00708 1.21766 0.95961 0.99711 1.01157 1.19124 0.92197 0.95935 0.93138 1.21240 1.09476 1.29788 0.93975 0.92305 1.25012 0.95359 0.95425 0.98780 1.69963 1.13963 1.37202 1.32629 0.86670 0.77397 0.79402 0.84988 1.20869 1.21373 1.19904 0.94637 0.94040 0.89628 0.90752 0.90246 0.92490 0.89356 0.91493 0.88846 0.83992 0.95873 0.91430 0.93740 0.92771 0.94160 0.94191 0.91701 0.94894 0.96972 0.96635 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.83 101.05 1.09 1.35 16 2 O -0.36 -4.23 9.12 -35.23 -0.32 -4.55 16 3 C 0.09 0.93 2.28 -26.55 -0.06 0.87 16 4 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 5 C -0.18 -1.63 5.83 -26.59 -0.16 -1.79 16 6 C 0.07 0.68 6.69 37.20 0.25 0.93 16 7 O -0.39 -5.15 10.77 -35.23 -0.38 -5.53 16 8 C 0.08 1.03 6.18 37.20 0.23 1.26 16 9 C 0.06 0.76 2.48 -67.58 -0.17 0.59 16 10 H 0.06 0.79 7.80 -51.93 -0.41 0.38 16 11 N -0.67 -9.78 5.34 -106.58 -0.57 -10.35 16 12 C 0.07 1.17 4.45 -3.82 -0.02 1.15 16 13 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 14 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 15 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 16 C 0.03 0.85 4.04 -27.89 -0.11 0.73 16 17 C -0.51 -13.89 7.65 -34.44 -0.26 -14.15 16 18 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 21 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16 26 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.96 7.82 -51.93 -0.41 0.56 16 33 H 0.09 1.32 7.52 -51.93 -0.39 0.93 16 34 H 0.34 4.81 6.41 -39.29 -0.25 4.56 16 35 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 36 H 0.07 1.21 7.49 -51.93 -0.39 0.82 16 37 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 38 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 42 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 344.73 15.07 5.20 5.20 Total: -1.00 -29.97 344.73 -7.28 -37.26 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.12 Total: 0.43 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 1.20 Total: -12.88 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.17 Total: -36.57 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.70 Total: -10.08 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.97 -7.28 -37.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724883529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.678 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds