Wall clock time and date at job start Mon Mar 30 2020 05:39:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.42906 * 113.99684 * 2 1
4 4 H 1.08992 * 109.61424 * 330.22125 * 3 2 1
5 5 C 1.53181 * 109.54132 * 90.44338 * 3 2 1
6 6 C 1.53088 * 109.16708 * 62.88493 * 5 3 2
7 7 O 1.42911 * 109.41269 * 57.60434 * 6 5 3
8 8 C 1.42904 * 114.09687 * 298.84358 * 7 6 5
9 9 C 1.53090 * 109.41770 * 61.16072 * 8 7 6
10 10 H 1.09001 * 109.52305 * 62.35756 * 9 8 7
11 11 N 1.46898 * 109.52367 * 182.48547 * 9 8 7
12 12 C 1.46906 * 110.99888 * 274.99899 * 11 9 8
13 13 C 1.52993 * 109.47378 * 180.02562 * 12 11 9
14 14 C 1.53008 * 109.46733 * 299.99953 * 13 12 11
15 15 C 1.53005 * 109.47212 * 59.99438 * 13 12 11
16 16 C 1.52996 * 109.47473 * 179.97438 * 13 12 11
17 17 C 1.50699 * 109.47239 * 179.97438 * 16 13 12
18 18 H 1.08003 * 119.99960 * 0.02562 * 17 16 13
19 19 C 1.37882 * 119.99798 * 179.97438 * 17 16 13
20 20 N 1.31508 * 120.00253 * 0.02562 * 19 17 16
21 21 Si 1.86799 * 119.99629 * 180.02562 * 19 17 16
22 22 H 1.48500 * 109.46921 * 90.00726 * 21 19 17
23 23 H 1.48500 * 109.47163 * 210.00394 * 21 19 17
24 24 H 1.48494 * 109.47628 * 330.00590 * 21 19 17
25 25 H 1.08993 * 109.47124 * 300.00296 * 1 2 3
26 26 H 1.08995 * 109.46561 * 60.00356 * 1 2 3
27 27 H 1.08995 * 109.46898 * 180.02562 * 1 2 3
28 28 H 1.08995 * 109.52032 * 302.97657 * 5 3 2
29 29 H 1.09004 * 109.51439 * 182.79080 * 5 3 2
30 30 H 1.09005 * 109.47925 * 297.62667 * 6 5 3
31 31 H 1.08996 * 109.49291 * 177.59257 * 6 5 3
32 32 H 1.08999 * 109.48208 * 301.17184 * 8 7 6
33 33 H 1.09004 * 109.47882 * 181.14350 * 8 7 6
34 34 H 1.00901 * 111.00121 * 151.04485 * 11 9 8
35 35 H 1.09004 * 109.47040 * 299.99934 * 12 11 9
36 36 H 1.09000 * 109.47033 * 59.99886 * 12 11 9
37 37 H 1.09002 * 109.47288 * 60.00045 * 14 13 12
38 38 H 1.09001 * 109.46630 * 179.97438 * 14 13 12
39 39 H 1.09000 * 109.47188 * 299.99959 * 14 13 12
40 40 H 1.08996 * 109.46524 * 60.00440 * 15 13 12
41 41 H 1.09001 * 109.46962 * 180.02562 * 15 13 12
42 42 H 1.08992 * 109.47457 * 300.00343 * 15 13 12
43 43 H 1.08996 * 109.47261 * 300.00171 * 16 13 12
44 44 H 1.09000 * 109.46870 * 59.99782 * 16 13 12
45 45 H 0.97001 * 120.00663 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 1 1.3450 2.0022 -0.5099
5 6 2.2288 1.7691 1.4435
6 6 3.2253 0.8296 2.1277
7 8 4.4485 0.8150 1.3888
8 6 4.3135 0.3451 0.0460
9 6 3.3607 1.2651 -0.7218
10 1 3.7813 2.2698 -0.7661
11 7 3.1736 0.7507 -2.0849
12 6 4.2431 1.2198 -2.9761
13 6 4.0142 0.6653 -4.3835
14 6 4.0234 -0.8640 -4.3368
15 6 2.6621 1.1512 -4.9095
16 6 5.1277 1.1544 -5.3118
17 6 4.9025 0.6077 -6.6979
18 1 4.0501 -0.0251 -6.8970
19 6 5.7840 0.9161 -7.7123
20 7 6.8216 1.6870 -7.4700
21 14 5.5045 0.2389 -9.4306
22 1 4.6668 1.1884 -10.2065
23 1 6.8121 0.0619 -10.1117
24 1 4.8123 -1.0717 -9.3397
25 1 -0.3633 0.5138 0.8899
26 1 -0.3632 0.5138 -0.8900
27 1 -0.3633 -1.0276 0.0005
28 1 1.2805 1.7478 1.9804
29 1 2.6260 2.7842 1.4438
30 1 2.8100 -0.1776 2.1630
31 1 3.4175 1.1794 3.1419
32 1 3.9125 -0.6684 0.0542
33 1 5.2896 0.3460 -0.4393
34 1 2.2657 1.0034 -2.4454
35 1 4.2362 2.3093 -3.0097
36 1 5.2064 0.8739 -2.6011
37 1 3.2299 -1.2122 -3.6755
38 1 3.8599 -1.2591 -5.3394
39 1 4.9867 -1.2103 -3.9620
40 1 2.6555 2.2407 -4.9427
41 1 2.4988 0.7558 -5.9120
42 1 1.8686 0.8031 -4.2483
43 1 5.1207 2.2439 -5.3450
44 1 6.0911 0.8085 -4.9372
45 1 7.4420 1.9037 -8.1835
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000724883529.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:39:21
Heat of formation + Delta-G solvation = -126.920978 kcal
Electronic energy + Delta-G solvation = -22304.717277 eV
Core-core repulsion = 19127.886934 eV
Total energy + Delta-G solvation = -3176.830343 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 271.193 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.97502 -38.96724 -38.04038 -35.82265 -34.25187 -32.83955 -30.46631 -28.78323
-27.90137 -27.43897 -26.77507 -25.68230 -24.70377 -23.06027 -21.08184 -19.52284
-18.32426 -17.69028 -17.53604 -17.01862 -16.60404 -16.56879 -16.11642 -15.63626
-15.51051 -15.19198 -14.85673 -14.51020 -14.25787 -13.88166 -13.85520 -13.50977
-13.41576 -13.21584 -12.84589 -12.74365 -12.65083 -12.45076 -12.24062 -12.17912
-12.12808 -12.00914 -11.86207 -11.39948 -11.27835 -10.87975 -10.77347 -10.54554
-10.49735 -10.35797 -9.30270 -8.13186 -6.20215 1.41222 1.42087 1.52726
2.44300 2.74279 2.89060 3.20814 3.30811 3.65470 3.86221 3.94186
4.08180 4.15854 4.24178 4.27385 4.40122 4.45437 4.51289 4.58167
4.69993 4.74201 4.77050 4.79222 4.82321 4.91128 4.92636 4.98381
5.06460 5.08533 5.15201 5.22147 5.22940 5.52409 5.54944 5.59245
5.65723 5.87808 5.92861 5.95620 6.29092 6.32177 6.39255 6.49871
6.94949 7.47144 8.99231
Molecular weight = 271.19amu
Principal moments of inertia in cm(-1)
A = 0.033427 B = 0.003896 C = 0.003668
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 837.453590 B = 7184.969356 C = 7631.943887
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.386 6.386
3 C 0.087 3.913
4 H 0.075 0.925
5 C -0.169 4.169
6 C 0.059 3.941
7 O -0.402 6.402
8 C 0.081 3.919
9 C 0.058 3.942
10 H 0.055 0.945
11 N -0.664 5.664
12 C 0.081 3.919
13 C -0.054 4.054
14 C -0.106 4.106
15 C -0.121 4.121
16 C 0.040 3.960
17 C -0.514 4.514
18 H 0.066 0.934
19 C -0.004 4.004
20 N -0.938 5.938
21 Si 0.956 3.044
22 H -0.274 1.274
23 H -0.287 1.287
24 H -0.263 1.263
25 H 0.052 0.948
26 H 0.045 0.955
27 H 0.091 0.909
28 H 0.097 0.903
29 H 0.083 0.917
30 H 0.053 0.947
31 H 0.109 0.891
32 H 0.057 0.943
33 H 0.079 0.921
34 H 0.346 0.654
35 H 0.019 0.981
36 H 0.056 0.944
37 H 0.066 0.934
38 H 0.038 0.962
39 H 0.029 0.971
40 H 0.037 0.963
41 H 0.047 0.953
42 H 0.066 0.934
43 H -0.016 1.016
44 H -0.017 1.017
45 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.141 -0.821 18.540 23.332
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.304 6.304
3 C 0.029 3.971
4 H 0.093 0.907
5 C -0.208 4.208
6 C -0.017 4.017
7 O -0.321 6.321
8 C 0.003 3.997
9 C -0.052 4.052
10 H 0.073 0.927
11 N -0.298 5.298
12 C -0.048 4.048
13 C -0.054 4.054
14 C -0.163 4.163
15 C -0.178 4.178
16 C 0.002 3.998
17 C -0.552 4.552
18 H 0.084 0.916
19 C -0.201 4.201
20 N -0.580 5.580
21 Si 0.781 3.219
22 H -0.200 1.200
23 H -0.213 1.213
24 H -0.187 1.187
25 H 0.071 0.929
26 H 0.064 0.936
27 H 0.110 0.890
28 H 0.116 0.884
29 H 0.102 0.898
30 H 0.072 0.928
31 H 0.127 0.873
32 H 0.075 0.925
33 H 0.097 0.903
34 H 0.167 0.833
35 H 0.037 0.963
36 H 0.074 0.926
37 H 0.085 0.915
38 H 0.057 0.943
39 H 0.048 0.952
40 H 0.056 0.944
41 H 0.066 0.934
42 H 0.085 0.915
43 H 0.003 0.997
44 H 0.002 0.998
45 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -13.419 -1.465 18.687 23.053
hybrid contribution -0.096 1.052 -1.453 1.797
sum -13.515 -0.413 17.234 21.905
Atomic orbital electron populations
1.22940 0.80029 1.03538 1.00576 1.87993 1.20709 1.26753 1.94995
1.22300 0.93348 0.85683 0.95761 0.90749 1.22652 1.01581 1.00657
0.95883 1.22654 0.84277 0.99243 0.95532 1.87901 1.32667 1.87025
1.24483 1.22346 0.99149 0.96837 0.81335 1.22229 0.95953 0.97333
0.89694 0.92679 1.60301 1.05711 1.63238 1.00536 1.21916 0.94672
0.95833 0.92385 1.20477 0.96063 0.96208 0.92650 1.21494 1.00308
0.94363 1.00157 1.21672 0.95790 0.99544 1.00838 1.19006 0.92814
0.94024 0.93931 1.21620 1.09369 1.29315 0.94890 0.91585 1.25914
0.95137 0.95812 1.03196 1.70107 1.15089 1.38804 1.33968 0.85580
0.77341 0.79155 0.79800 1.20019 1.21312 1.18716 0.92944 0.93608
0.89021 0.88432 0.89807 0.92819 0.87288 0.92453 0.90291 0.83292
0.96284 0.92588 0.91463 0.94311 0.95216 0.94371 0.93393 0.91513
0.99742 0.99842 0.93179
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.36 10.83 113.37 1.23 1.58 16
2 O -0.39 -7.98 9.12 -148.98 -1.36 -9.34 16
3 C 0.09 1.68 2.28 30.71 0.07 1.75 16
4 H 0.07 1.25 7.79 -2.39 -0.02 1.23 16
5 C -0.17 -2.66 5.83 30.68 0.18 -2.48 16
6 C 0.06 1.10 6.69 72.01 0.48 1.58 16
7 O -0.40 -10.40 10.77 -148.98 -1.60 -12.00 16
8 C 0.08 2.18 6.18 72.01 0.45 2.62 16
9 C 0.06 1.44 2.48 45.01 0.11 1.56 16
10 H 0.06 1.43 7.80 -2.39 -0.02 1.41 16
11 N -0.66 -18.50 5.34 -491.10 -2.62 -21.12 16
12 C 0.08 2.80 4.45 86.30 0.38 3.18 16
13 C -0.05 -2.14 0.60 -52.18 -0.03 -2.17 16
14 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16
15 C -0.12 -4.33 7.89 71.98 0.57 -3.76 16
16 C 0.04 2.08 4.04 29.85 0.12 2.20 16
17 C -0.51 -28.60 7.65 25.60 0.20 -28.40 16
18 H 0.07 3.52 5.68 -2.91 -0.02 3.50 16
19 C 0.00 -0.23 5.46 84.66 0.46 0.24 16
20 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16
21 Si 0.96 44.66 29.54 68.60 2.03 46.69 16
22 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16
23 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16
24 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16
25 H 0.05 0.56 7.87 -2.39 -0.02 0.54 16
26 H 0.05 0.60 8.09 -2.39 -0.02 0.58 16
27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
28 H 0.10 1.11 7.87 -2.39 -0.02 1.09 16
29 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16
30 H 0.05 1.04 7.82 -2.38 -0.02 1.02 16
31 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16
32 H 0.06 1.64 7.82 -2.39 -0.02 1.62 16
33 H 0.08 2.29 7.52 -2.38 -0.02 2.28 16
34 H 0.35 8.93 6.41 -89.69 -0.57 8.35 16
35 H 0.02 0.67 8.06 -2.38 -0.02 0.65 16
36 H 0.06 2.06 7.49 -2.39 -0.02 2.04 16
37 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16
38 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16
39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16
40 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16
41 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16
42 H 0.07 1.92 6.57 -2.39 -0.02 1.91 16
43 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16
44 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16
45 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16
Total: -1.00 -65.33 344.73 1.89 -63.44
By element:
Atomic # 1 Polarization: 15.08 SS G_CDS: 0.37 Total: 15.45 kcal
Atomic # 6 Polarization: -30.40 SS G_CDS: 4.79 Total: -25.61 kcal
Atomic # 7 Polarization: -76.29 SS G_CDS: -2.34 Total: -78.63 kcal
Atomic # 8 Polarization: -18.38 SS G_CDS: -2.96 Total: -21.34 kcal
Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal
Total: -65.33 1.89 -63.44 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724883529.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.482 kcal
(2) G-P(sol) polarization free energy of solvation -65.332 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.815 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.921 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds