Wall clock time and date at job start Mon Mar 30 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42906 * 113.99684 * 2 1 4 4 H 1.08992 * 109.61424 * 330.22125 * 3 2 1 5 5 C 1.53181 * 109.54132 * 90.44338 * 3 2 1 6 6 C 1.53088 * 109.16708 * 62.88493 * 5 3 2 7 7 O 1.42911 * 109.41269 * 57.60434 * 6 5 3 8 8 C 1.42904 * 114.09687 * 298.84358 * 7 6 5 9 9 C 1.53090 * 109.41770 * 61.16072 * 8 7 6 10 10 H 1.09001 * 109.52305 * 62.35756 * 9 8 7 11 11 N 1.46898 * 109.52367 * 182.48547 * 9 8 7 12 12 C 1.46906 * 110.99888 * 274.99899 * 11 9 8 13 13 C 1.52993 * 109.47378 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.46733 * 299.99953 * 13 12 11 15 15 C 1.53005 * 109.47212 * 59.99438 * 13 12 11 16 16 C 1.52996 * 109.47473 * 179.97438 * 13 12 11 17 17 C 1.50699 * 109.47239 * 179.97438 * 16 13 12 18 18 H 1.08003 * 119.99960 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99798 * 179.97438 * 17 16 13 20 20 N 1.31508 * 120.00253 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99629 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46921 * 90.00726 * 21 19 17 23 23 H 1.48500 * 109.47163 * 210.00394 * 21 19 17 24 24 H 1.48494 * 109.47628 * 330.00590 * 21 19 17 25 25 H 1.08993 * 109.47124 * 300.00296 * 1 2 3 26 26 H 1.08995 * 109.46561 * 60.00356 * 1 2 3 27 27 H 1.08995 * 109.46898 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.52032 * 302.97657 * 5 3 2 29 29 H 1.09004 * 109.51439 * 182.79080 * 5 3 2 30 30 H 1.09005 * 109.47925 * 297.62667 * 6 5 3 31 31 H 1.08996 * 109.49291 * 177.59257 * 6 5 3 32 32 H 1.08999 * 109.48208 * 301.17184 * 8 7 6 33 33 H 1.09004 * 109.47882 * 181.14350 * 8 7 6 34 34 H 1.00901 * 111.00121 * 151.04485 * 11 9 8 35 35 H 1.09004 * 109.47040 * 299.99934 * 12 11 9 36 36 H 1.09000 * 109.47033 * 59.99886 * 12 11 9 37 37 H 1.09002 * 109.47288 * 60.00045 * 14 13 12 38 38 H 1.09001 * 109.46630 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47188 * 299.99959 * 14 13 12 40 40 H 1.08996 * 109.46524 * 60.00440 * 15 13 12 41 41 H 1.09001 * 109.46962 * 180.02562 * 15 13 12 42 42 H 1.08992 * 109.47457 * 300.00343 * 15 13 12 43 43 H 1.08996 * 109.47261 * 300.00171 * 16 13 12 44 44 H 1.09000 * 109.46870 * 59.99782 * 16 13 12 45 45 H 0.97001 * 120.00663 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 2.0022 -0.5099 5 6 2.2288 1.7691 1.4435 6 6 3.2253 0.8296 2.1277 7 8 4.4485 0.8150 1.3888 8 6 4.3135 0.3451 0.0460 9 6 3.3607 1.2651 -0.7218 10 1 3.7813 2.2698 -0.7661 11 7 3.1736 0.7507 -2.0849 12 6 4.2431 1.2198 -2.9761 13 6 4.0142 0.6653 -4.3835 14 6 4.0234 -0.8640 -4.3368 15 6 2.6621 1.1512 -4.9095 16 6 5.1277 1.1544 -5.3118 17 6 4.9025 0.6077 -6.6979 18 1 4.0501 -0.0251 -6.8970 19 6 5.7840 0.9161 -7.7123 20 7 6.8216 1.6870 -7.4700 21 14 5.5045 0.2389 -9.4306 22 1 4.6668 1.1884 -10.2065 23 1 6.8121 0.0619 -10.1117 24 1 4.8123 -1.0717 -9.3397 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.2805 1.7478 1.9804 29 1 2.6260 2.7842 1.4438 30 1 2.8100 -0.1776 2.1630 31 1 3.4175 1.1794 3.1419 32 1 3.9125 -0.6684 0.0542 33 1 5.2896 0.3460 -0.4393 34 1 2.2657 1.0034 -2.4454 35 1 4.2362 2.3093 -3.0097 36 1 5.2064 0.8739 -2.6011 37 1 3.2299 -1.2122 -3.6755 38 1 3.8599 -1.2591 -5.3394 39 1 4.9867 -1.2103 -3.9620 40 1 2.6555 2.2407 -4.9427 41 1 2.4988 0.7558 -5.9120 42 1 1.8686 0.8031 -4.2483 43 1 5.1207 2.2439 -5.3450 44 1 6.0911 0.8085 -4.9372 45 1 7.4420 1.9037 -8.1835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724883529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:21 Heat of formation + Delta-G solvation = -126.920978 kcal Electronic energy + Delta-G solvation = -22304.717277 eV Core-core repulsion = 19127.886934 eV Total energy + Delta-G solvation = -3176.830343 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97502 -38.96724 -38.04038 -35.82265 -34.25187 -32.83955 -30.46631 -28.78323 -27.90137 -27.43897 -26.77507 -25.68230 -24.70377 -23.06027 -21.08184 -19.52284 -18.32426 -17.69028 -17.53604 -17.01862 -16.60404 -16.56879 -16.11642 -15.63626 -15.51051 -15.19198 -14.85673 -14.51020 -14.25787 -13.88166 -13.85520 -13.50977 -13.41576 -13.21584 -12.84589 -12.74365 -12.65083 -12.45076 -12.24062 -12.17912 -12.12808 -12.00914 -11.86207 -11.39948 -11.27835 -10.87975 -10.77347 -10.54554 -10.49735 -10.35797 -9.30270 -8.13186 -6.20215 1.41222 1.42087 1.52726 2.44300 2.74279 2.89060 3.20814 3.30811 3.65470 3.86221 3.94186 4.08180 4.15854 4.24178 4.27385 4.40122 4.45437 4.51289 4.58167 4.69993 4.74201 4.77050 4.79222 4.82321 4.91128 4.92636 4.98381 5.06460 5.08533 5.15201 5.22147 5.22940 5.52409 5.54944 5.59245 5.65723 5.87808 5.92861 5.95620 6.29092 6.32177 6.39255 6.49871 6.94949 7.47144 8.99231 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.033427 B = 0.003896 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.453590 B = 7184.969356 C = 7631.943887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.386 6.386 3 C 0.087 3.913 4 H 0.075 0.925 5 C -0.169 4.169 6 C 0.059 3.941 7 O -0.402 6.402 8 C 0.081 3.919 9 C 0.058 3.942 10 H 0.055 0.945 11 N -0.664 5.664 12 C 0.081 3.919 13 C -0.054 4.054 14 C -0.106 4.106 15 C -0.121 4.121 16 C 0.040 3.960 17 C -0.514 4.514 18 H 0.066 0.934 19 C -0.004 4.004 20 N -0.938 5.938 21 Si 0.956 3.044 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.263 1.263 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.346 0.654 35 H 0.019 0.981 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.029 0.971 40 H 0.037 0.963 41 H 0.047 0.953 42 H 0.066 0.934 43 H -0.016 1.016 44 H -0.017 1.017 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.141 -0.821 18.540 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.304 6.304 3 C 0.029 3.971 4 H 0.093 0.907 5 C -0.208 4.208 6 C -0.017 4.017 7 O -0.321 6.321 8 C 0.003 3.997 9 C -0.052 4.052 10 H 0.073 0.927 11 N -0.298 5.298 12 C -0.048 4.048 13 C -0.054 4.054 14 C -0.163 4.163 15 C -0.178 4.178 16 C 0.002 3.998 17 C -0.552 4.552 18 H 0.084 0.916 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.781 3.219 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.187 1.187 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.167 0.833 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.003 0.997 44 H 0.002 0.998 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.419 -1.465 18.687 23.053 hybrid contribution -0.096 1.052 -1.453 1.797 sum -13.515 -0.413 17.234 21.905 Atomic orbital electron populations 1.22940 0.80029 1.03538 1.00576 1.87993 1.20709 1.26753 1.94995 1.22300 0.93348 0.85683 0.95761 0.90749 1.22652 1.01581 1.00657 0.95883 1.22654 0.84277 0.99243 0.95532 1.87901 1.32667 1.87025 1.24483 1.22346 0.99149 0.96837 0.81335 1.22229 0.95953 0.97333 0.89694 0.92679 1.60301 1.05711 1.63238 1.00536 1.21916 0.94672 0.95833 0.92385 1.20477 0.96063 0.96208 0.92650 1.21494 1.00308 0.94363 1.00157 1.21672 0.95790 0.99544 1.00838 1.19006 0.92814 0.94024 0.93931 1.21620 1.09369 1.29315 0.94890 0.91585 1.25914 0.95137 0.95812 1.03196 1.70107 1.15089 1.38804 1.33968 0.85580 0.77341 0.79155 0.79800 1.20019 1.21312 1.18716 0.92944 0.93608 0.89021 0.88432 0.89807 0.92819 0.87288 0.92453 0.90291 0.83292 0.96284 0.92588 0.91463 0.94311 0.95216 0.94371 0.93393 0.91513 0.99742 0.99842 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.83 113.37 1.23 1.58 16 2 O -0.39 -7.98 9.12 -148.98 -1.36 -9.34 16 3 C 0.09 1.68 2.28 30.71 0.07 1.75 16 4 H 0.07 1.25 7.79 -2.39 -0.02 1.23 16 5 C -0.17 -2.66 5.83 30.68 0.18 -2.48 16 6 C 0.06 1.10 6.69 72.01 0.48 1.58 16 7 O -0.40 -10.40 10.77 -148.98 -1.60 -12.00 16 8 C 0.08 2.18 6.18 72.01 0.45 2.62 16 9 C 0.06 1.44 2.48 45.01 0.11 1.56 16 10 H 0.06 1.43 7.80 -2.39 -0.02 1.41 16 11 N -0.66 -18.50 5.34 -491.10 -2.62 -21.12 16 12 C 0.08 2.80 4.45 86.30 0.38 3.18 16 13 C -0.05 -2.14 0.60 -52.18 -0.03 -2.17 16 14 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 15 C -0.12 -4.33 7.89 71.98 0.57 -3.76 16 16 C 0.04 2.08 4.04 29.85 0.12 2.20 16 17 C -0.51 -28.60 7.65 25.60 0.20 -28.40 16 18 H 0.07 3.52 5.68 -2.91 -0.02 3.50 16 19 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 20 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 21 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 24 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 25 H 0.05 0.56 7.87 -2.39 -0.02 0.54 16 26 H 0.05 0.60 8.09 -2.39 -0.02 0.58 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.11 7.87 -2.39 -0.02 1.09 16 29 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.05 1.04 7.82 -2.38 -0.02 1.02 16 31 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.64 7.82 -2.39 -0.02 1.62 16 33 H 0.08 2.29 7.52 -2.38 -0.02 2.28 16 34 H 0.35 8.93 6.41 -89.69 -0.57 8.35 16 35 H 0.02 0.67 8.06 -2.38 -0.02 0.65 16 36 H 0.06 2.06 7.49 -2.39 -0.02 2.04 16 37 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 38 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 41 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 42 H 0.07 1.92 6.57 -2.39 -0.02 1.91 16 43 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 44 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 45 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -65.33 344.73 1.89 -63.44 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.37 Total: 15.45 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 4.79 Total: -25.61 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -2.34 Total: -78.63 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -2.96 Total: -21.34 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.33 1.89 -63.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724883529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.482 kcal (2) G-P(sol) polarization free energy of solvation -65.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds