Wall clock time and date at job start Mon Mar 30 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99560 * 2 1 4 4 H 1.09001 * 109.61516 * 30.22750 * 3 2 1 5 5 C 1.53177 * 109.54804 * 270.00215 * 3 2 1 6 6 C 1.53098 * 109.21356 * 297.14639 * 5 3 2 7 7 O 1.42899 * 109.41440 * 302.35638 * 6 5 3 8 8 C 1.42904 * 114.09711 * 61.16120 * 7 6 5 9 9 C 1.53100 * 109.41581 * 298.84173 * 8 7 6 10 10 H 1.09005 * 109.51861 * 297.70267 * 9 8 7 11 11 N 1.46900 * 109.52198 * 177.57858 * 9 8 7 12 12 C 1.46901 * 111.00084 * 84.99819 * 11 9 8 13 13 C 1.52996 * 109.47178 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46994 * 299.99701 * 13 12 11 15 15 C 1.52993 * 109.47290 * 59.99626 * 13 12 11 16 16 C 1.53000 * 109.47290 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.47096 * 179.97438 * 16 13 12 18 18 H 1.07989 * 119.99923 * 359.97438 * 17 16 13 19 19 C 1.37878 * 119.99518 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00449 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99762 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46853 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47126 * 120.00017 * 21 19 17 24 24 H 1.48498 * 109.47157 * 240.00648 * 21 19 17 25 25 H 1.08992 * 109.47110 * 299.99304 * 1 2 3 26 26 H 1.08991 * 109.47455 * 59.99987 * 1 2 3 27 27 H 1.09004 * 109.46465 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.52487 * 177.20850 * 5 3 2 29 29 H 1.09004 * 109.52023 * 57.08469 * 5 3 2 30 30 H 1.08999 * 109.47859 * 62.34349 * 6 5 3 31 31 H 1.09000 * 109.47836 * 182.37389 * 6 5 3 32 32 H 1.09002 * 109.48461 * 58.81736 * 8 7 6 33 33 H 1.08999 * 109.48109 * 178.84665 * 8 7 6 34 34 H 1.00891 * 110.99747 * 321.04090 * 11 9 8 35 35 H 1.09003 * 109.47041 * 299.99667 * 12 11 9 36 36 H 1.08999 * 109.47255 * 59.99601 * 12 11 9 37 37 H 1.09006 * 109.46871 * 60.00168 * 14 13 12 38 38 H 1.08999 * 109.46967 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47488 * 300.00485 * 14 13 12 40 40 H 1.09003 * 109.46885 * 60.00164 * 15 13 12 41 41 H 1.08999 * 109.47564 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47683 * 300.00366 * 15 13 12 43 43 H 1.09003 * 109.46795 * 299.99780 * 16 13 12 44 44 H 1.08999 * 109.47390 * 59.99646 * 16 13 12 45 45 H 0.96998 * 120.00199 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3485 2.0005 0.5169 5 6 2.2185 1.7737 -1.4435 6 6 3.2096 0.8367 -2.1390 7 8 4.4386 0.8196 -1.4103 8 6 4.3146 0.3448 -0.0681 9 6 3.3679 1.2620 0.7107 10 1 3.7883 2.2668 0.7542 11 7 3.1931 0.7435 2.0740 12 6 4.2701 1.2107 2.9571 13 6 4.0538 0.6519 4.3648 14 6 2.7062 1.1356 4.9040 15 6 4.0635 -0.8771 4.3136 16 6 5.1751 1.1390 5.2847 17 6 4.9617 0.5891 6.6715 18 1 4.1113 -0.0441 6.8763 19 6 5.8524 0.8945 7.6787 20 7 6.8879 1.6660 7.4294 21 14 5.5876 0.2134 9.3979 22 1 4.3588 -0.6203 9.4161 23 1 6.7551 -0.6180 9.7862 24 1 5.4385 1.3366 10.3577 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 2.6156 2.7888 -1.4434 29 1 1.2662 1.7552 -1.9735 30 1 2.7939 -0.1703 -2.1747 31 1 3.3934 1.1904 -3.1535 32 1 3.9134 -0.6686 -0.0766 33 1 5.2945 0.3439 0.4092 34 1 3.1375 -0.2639 2.0732 35 1 5.2302 0.8665 2.5727 36 1 4.2629 2.3001 2.9939 37 1 1.9071 0.7889 4.2488 38 1 2.5519 0.7371 5.9068 39 1 2.6992 2.2250 4.9405 40 1 5.0236 -1.2217 3.9294 41 1 3.9090 -1.2753 5.3165 42 1 3.2644 -1.2239 3.6584 43 1 6.1354 0.7948 4.9007 44 1 5.1678 2.2284 5.3211 45 1 7.5147 1.8805 8.1379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724883532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:25 Heat of formation + Delta-G solvation = -109.026105 kcal Electronic energy + Delta-G solvation = -22305.986638 eV Core-core repulsion = 19129.932275 eV Total energy + Delta-G solvation = -3176.054363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.03953 -37.46011 -37.15505 -34.43619 -32.34565 -31.93266 -29.17273 -26.90460 -26.65377 -26.31128 -25.17457 -24.76048 -23.12807 -21.87829 -20.24478 -17.93999 -16.78785 -16.34180 -16.27361 -16.15698 -15.58693 -15.31672 -14.77285 -14.55611 -14.23112 -13.76309 -13.55698 -13.21495 -12.77171 -12.68014 -12.44904 -12.29260 -11.97664 -11.78818 -11.69846 -11.35249 -11.17701 -11.01116 -10.87472 -10.74329 -10.58012 -10.48477 -10.26707 -10.11414 -9.83438 -9.66716 -9.52368 -8.99161 -8.79675 -8.30432 -8.01391 -5.94743 -3.94726 3.33479 3.41347 3.44806 3.66832 3.75905 4.33830 4.51125 4.62766 4.82618 4.83590 4.96954 5.13187 5.15710 5.28805 5.33473 5.41201 5.50036 5.56130 5.56771 5.63208 5.66463 5.76333 5.77538 5.90537 5.98966 6.04780 6.27095 6.34965 6.53127 6.67794 6.79593 6.84797 7.01981 7.09423 7.22795 7.27518 7.27751 7.41952 7.69140 7.73303 7.87591 8.05770 8.50261 9.10966 9.68122 11.16971 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.033467 B = 0.003894 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.435062 B = 7189.714547 C = 7634.138778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.099 3.901 4 H 0.071 0.929 5 C -0.179 4.179 6 C 0.066 3.934 7 O -0.383 6.383 8 C 0.036 3.964 9 C 0.060 3.940 10 H 0.093 0.907 11 N -0.671 5.671 12 C 0.067 3.933 13 C -0.058 4.058 14 C -0.116 4.116 15 C -0.130 4.130 16 C 0.033 3.967 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.285 1.285 25 H 0.044 0.956 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.346 0.654 35 H 0.025 0.975 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.013 0.987 44 H 0.015 0.985 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 -1.568 -17.935 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C 0.040 3.960 4 H 0.089 0.911 5 C -0.217 4.217 6 C -0.011 4.011 7 O -0.301 6.301 8 C -0.042 4.042 9 C -0.052 4.052 10 H 0.111 0.889 11 N -0.304 5.304 12 C -0.061 4.061 13 C -0.058 4.058 14 C -0.173 4.173 15 C -0.187 4.187 16 C -0.004 4.004 17 C -0.544 4.544 18 H 0.078 0.922 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.166 0.834 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.058 -1.107 -17.746 20.939 hybrid contribution 0.268 -0.619 0.811 1.055 sum -10.790 -1.726 -16.935 20.154 Atomic orbital electron populations 1.22728 0.81394 1.02403 0.99727 1.87872 1.19377 1.27460 1.94882 1.22226 0.94902 0.85212 0.93630 0.91087 1.22722 1.00642 1.00933 0.97405 1.22446 0.84848 0.98934 0.94889 1.87911 1.30813 1.86580 1.24769 1.23370 1.00800 0.97452 0.82578 1.22298 0.93358 1.00050 0.89446 0.88859 1.60584 1.47487 1.16351 1.05954 1.22200 0.90706 0.99845 0.93381 1.20619 0.98059 0.94605 0.92515 1.21596 0.95757 0.99791 1.00144 1.21773 0.99111 0.96150 1.01654 1.19131 0.91887 0.96204 0.93205 1.21278 1.09246 1.29693 0.94190 0.92242 1.25015 0.95402 0.95424 0.98763 1.69976 1.13800 1.37228 1.32750 0.86617 0.78021 0.78797 0.85055 1.19780 1.21199 1.21173 0.93693 0.94728 0.89982 0.90175 0.90796 0.92639 0.89325 0.92382 0.89019 0.83395 0.95708 0.91539 0.93938 0.92716 0.94238 0.94081 0.91732 0.94735 0.96886 0.96697 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.40 16 2 O -0.38 -4.35 9.11 -35.23 -0.32 -4.67 16 3 C 0.10 1.10 2.63 -26.48 -0.07 1.03 16 4 H 0.07 0.80 7.80 -51.93 -0.40 0.39 16 5 C -0.18 -1.67 5.82 -26.59 -0.15 -1.82 16 6 C 0.07 0.67 6.69 37.21 0.25 0.92 16 7 O -0.38 -5.00 10.77 -35.23 -0.38 -5.37 16 8 C 0.04 0.47 5.95 37.21 0.22 0.69 16 9 C 0.06 0.76 2.45 -67.50 -0.17 0.60 16 10 H 0.09 1.23 7.80 -51.93 -0.41 0.83 16 11 N -0.67 -9.71 5.29 -106.50 -0.56 -10.28 16 12 C 0.07 1.15 4.45 -3.83 -0.02 1.13 16 13 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 14 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 15 C -0.13 -2.42 7.89 37.15 0.29 -2.12 16 16 C 0.03 0.84 4.04 -27.88 -0.11 0.72 16 17 C -0.51 -13.85 7.65 -34.44 -0.26 -14.11 16 18 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.03 0.26 7.83 -51.93 -0.41 -0.15 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 30 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.75 7.77 -51.93 -0.40 0.35 16 33 H 0.09 1.21 7.52 -51.93 -0.39 0.82 16 34 H 0.35 5.05 6.46 -39.30 -0.25 4.80 16 35 H 0.02 0.43 7.49 -51.93 -0.39 0.04 16 36 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 37 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 38 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 42 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -29.70 344.70 -7.29 -36.99 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.12 Total: 0.98 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 1.18 Total: -13.29 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.17 Total: -36.46 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.70 Total: -10.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.70 -7.29 -36.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724883532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.033 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds