Wall clock time and date at job start Mon Mar 30 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99560 * 2 1 4 4 H 1.09001 * 109.61516 * 30.22750 * 3 2 1 5 5 C 1.53177 * 109.54804 * 270.00215 * 3 2 1 6 6 C 1.53098 * 109.21356 * 297.14639 * 5 3 2 7 7 O 1.42899 * 109.41440 * 302.35638 * 6 5 3 8 8 C 1.42904 * 114.09711 * 61.16120 * 7 6 5 9 9 C 1.53100 * 109.41581 * 298.84173 * 8 7 6 10 10 H 1.09005 * 109.51861 * 297.70267 * 9 8 7 11 11 N 1.46900 * 109.52198 * 177.57858 * 9 8 7 12 12 C 1.46901 * 111.00084 * 84.99819 * 11 9 8 13 13 C 1.52996 * 109.47178 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46994 * 299.99701 * 13 12 11 15 15 C 1.52993 * 109.47290 * 59.99626 * 13 12 11 16 16 C 1.53000 * 109.47290 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.47096 * 179.97438 * 16 13 12 18 18 H 1.07989 * 119.99923 * 359.97438 * 17 16 13 19 19 C 1.37878 * 119.99518 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00449 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99762 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46853 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47126 * 120.00017 * 21 19 17 24 24 H 1.48498 * 109.47157 * 240.00648 * 21 19 17 25 25 H 1.08992 * 109.47110 * 299.99304 * 1 2 3 26 26 H 1.08991 * 109.47455 * 59.99987 * 1 2 3 27 27 H 1.09004 * 109.46465 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.52487 * 177.20850 * 5 3 2 29 29 H 1.09004 * 109.52023 * 57.08469 * 5 3 2 30 30 H 1.08999 * 109.47859 * 62.34349 * 6 5 3 31 31 H 1.09000 * 109.47836 * 182.37389 * 6 5 3 32 32 H 1.09002 * 109.48461 * 58.81736 * 8 7 6 33 33 H 1.08999 * 109.48109 * 178.84665 * 8 7 6 34 34 H 1.00891 * 110.99747 * 321.04090 * 11 9 8 35 35 H 1.09003 * 109.47041 * 299.99667 * 12 11 9 36 36 H 1.08999 * 109.47255 * 59.99601 * 12 11 9 37 37 H 1.09006 * 109.46871 * 60.00168 * 14 13 12 38 38 H 1.08999 * 109.46967 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47488 * 300.00485 * 14 13 12 40 40 H 1.09003 * 109.46885 * 60.00164 * 15 13 12 41 41 H 1.08999 * 109.47564 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47683 * 300.00366 * 15 13 12 43 43 H 1.09003 * 109.46795 * 299.99780 * 16 13 12 44 44 H 1.08999 * 109.47390 * 59.99646 * 16 13 12 45 45 H 0.96998 * 120.00199 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3485 2.0005 0.5169 5 6 2.2185 1.7737 -1.4435 6 6 3.2096 0.8367 -2.1390 7 8 4.4386 0.8196 -1.4103 8 6 4.3146 0.3448 -0.0681 9 6 3.3679 1.2620 0.7107 10 1 3.7883 2.2668 0.7542 11 7 3.1931 0.7435 2.0740 12 6 4.2701 1.2107 2.9571 13 6 4.0538 0.6519 4.3648 14 6 2.7062 1.1356 4.9040 15 6 4.0635 -0.8771 4.3136 16 6 5.1751 1.1390 5.2847 17 6 4.9617 0.5891 6.6715 18 1 4.1113 -0.0441 6.8763 19 6 5.8524 0.8945 7.6787 20 7 6.8879 1.6660 7.4294 21 14 5.5876 0.2134 9.3979 22 1 4.3588 -0.6203 9.4161 23 1 6.7551 -0.6180 9.7862 24 1 5.4385 1.3366 10.3577 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 2.6156 2.7888 -1.4434 29 1 1.2662 1.7552 -1.9735 30 1 2.7939 -0.1703 -2.1747 31 1 3.3934 1.1904 -3.1535 32 1 3.9134 -0.6686 -0.0766 33 1 5.2945 0.3439 0.4092 34 1 3.1375 -0.2639 2.0732 35 1 5.2302 0.8665 2.5727 36 1 4.2629 2.3001 2.9939 37 1 1.9071 0.7889 4.2488 38 1 2.5519 0.7371 5.9068 39 1 2.6992 2.2250 4.9405 40 1 5.0236 -1.2217 3.9294 41 1 3.9090 -1.2753 5.3165 42 1 3.2644 -1.2239 3.6584 43 1 6.1354 0.7948 4.9007 44 1 5.1678 2.2284 5.3211 45 1 7.5147 1.8805 8.1379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724883532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:24 Heat of formation + Delta-G solvation = -128.638751 kcal Electronic energy + Delta-G solvation = -22306.837106 eV Core-core repulsion = 19129.932275 eV Total energy + Delta-G solvation = -3176.904832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.98093 -38.96536 -38.01623 -35.84337 -34.25061 -32.86111 -30.40304 -28.77183 -27.88880 -27.42357 -26.65741 -25.65507 -24.68539 -23.21949 -21.16172 -19.52903 -18.32628 -17.75183 -17.24476 -17.16517 -16.61947 -16.45840 -16.21940 -15.75125 -15.48268 -15.21399 -14.83942 -14.43308 -14.21849 -13.88040 -13.84048 -13.51434 -13.31551 -13.16848 -12.83525 -12.72749 -12.59213 -12.46995 -12.27218 -12.16195 -12.10954 -12.00445 -11.85332 -11.50666 -11.37497 -10.86513 -10.81121 -10.66596 -10.50321 -10.33104 -9.21351 -8.13290 -6.20137 1.40522 1.41604 1.53686 2.44256 2.80265 2.90159 3.20842 3.27809 3.74231 3.85410 4.00938 4.06524 4.15225 4.23304 4.25783 4.39885 4.44613 4.53911 4.60494 4.65461 4.73103 4.76684 4.80709 4.86861 4.88369 4.93791 4.96552 5.08060 5.09011 5.15106 5.22315 5.22834 5.52878 5.54829 5.59390 5.65707 5.87890 5.93362 5.96325 6.25079 6.33281 6.38623 6.49310 6.95298 7.47272 8.99284 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.033467 B = 0.003894 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.435062 B = 7189.714547 C = 7634.138778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.393 6.393 3 C 0.102 3.898 4 H 0.071 0.929 5 C -0.172 4.172 6 C 0.060 3.940 7 O -0.400 6.400 8 C 0.042 3.958 9 C 0.059 3.941 10 H 0.087 0.913 11 N -0.663 5.663 12 C 0.080 3.920 13 C -0.054 4.054 14 C -0.106 4.106 15 C -0.122 4.122 16 C 0.040 3.960 17 C -0.513 4.513 18 H 0.066 0.934 19 C -0.004 4.004 20 N -0.938 5.938 21 Si 0.955 3.045 22 H -0.261 1.261 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.347 0.653 35 H 0.019 0.981 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.031 0.969 40 H 0.036 0.964 41 H 0.047 0.953 42 H 0.065 0.935 43 H -0.016 1.016 44 H -0.015 1.015 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.031 -2.348 -18.884 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.312 6.312 3 C 0.043 3.957 4 H 0.089 0.911 5 C -0.210 4.210 6 C -0.016 4.016 7 O -0.318 6.318 8 C -0.036 4.036 9 C -0.051 4.051 10 H 0.105 0.895 11 N -0.296 5.296 12 C -0.049 4.049 13 C -0.054 4.054 14 C -0.163 4.163 15 C -0.180 4.180 16 C 0.002 3.998 17 C -0.551 4.551 18 H 0.084 0.916 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.781 3.219 22 H -0.184 1.184 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.168 0.832 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.053 -1.895 -18.711 22.892 hybrid contribution 0.867 -0.365 1.029 1.394 sum -12.187 -2.260 -17.682 21.593 Atomic orbital electron populations 1.22872 0.80007 1.03355 1.00386 1.87847 1.20891 1.27469 1.95039 1.22160 0.93619 0.85367 0.94548 0.91051 1.22681 1.01468 1.00688 0.96163 1.22658 0.84063 0.99289 0.95599 1.87891 1.32629 1.86631 1.24685 1.23225 1.00172 0.97353 0.82855 1.22335 0.94842 0.99525 0.88443 0.89459 1.60539 1.45886 1.16403 1.06772 1.21902 0.91435 0.99183 0.92382 1.20479 0.96294 0.95653 0.93008 1.21491 0.95944 0.99186 0.99676 1.21682 1.00124 0.94822 1.01324 1.19012 0.92670 0.94166 0.93951 1.21650 1.09096 1.29200 0.95132 0.91596 1.25910 0.95190 0.95832 1.03143 1.70114 1.14910 1.38822 1.34120 0.85535 0.78331 0.78193 0.79838 1.18446 1.20856 1.20852 0.94025 0.93064 0.88962 0.89834 0.88652 0.92755 0.87332 0.92452 0.90115 0.83200 0.96274 0.92319 0.91483 0.94320 0.95026 0.94458 0.93422 0.91619 0.99773 0.99704 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.82 113.37 1.23 1.68 16 2 O -0.39 -8.11 9.11 -148.98 -1.36 -9.47 16 3 C 0.10 2.05 2.63 30.76 0.08 2.13 16 4 H 0.07 1.44 7.80 -2.39 -0.02 1.42 16 5 C -0.17 -2.75 5.82 30.69 0.18 -2.58 16 6 C 0.06 1.09 6.69 72.01 0.48 1.57 16 7 O -0.40 -9.94 10.77 -148.98 -1.60 -11.54 16 8 C 0.04 1.06 5.95 72.02 0.43 1.48 16 9 C 0.06 1.45 2.45 45.05 0.11 1.56 16 10 H 0.09 2.24 7.80 -2.38 -0.02 2.22 16 11 N -0.66 -18.33 5.29 -490.85 -2.60 -20.93 16 12 C 0.08 2.73 4.45 86.30 0.38 3.12 16 13 C -0.05 -2.14 0.60 -52.19 -0.03 -2.17 16 14 C -0.11 -4.00 8.06 71.98 0.58 -3.42 16 15 C -0.12 -4.45 7.89 71.98 0.57 -3.88 16 16 C 0.04 2.06 4.04 29.85 0.12 2.18 16 17 C -0.51 -28.48 7.65 25.60 0.20 -28.28 16 18 H 0.07 3.52 5.68 -2.92 -0.02 3.50 16 19 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 20 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 21 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H 0.04 0.65 8.09 -2.39 -0.02 0.63 16 26 H 0.05 0.60 7.83 -2.39 -0.02 0.58 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.15 7.83 -2.38 -0.02 1.13 16 30 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 31 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.42 7.77 -2.39 -0.02 1.40 16 33 H 0.08 2.14 7.52 -2.39 -0.02 2.12 16 34 H 0.35 9.48 6.46 -89.70 -0.58 8.90 16 35 H 0.02 0.67 7.49 -2.39 -0.02 0.65 16 36 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 37 H 0.07 2.20 7.60 -2.38 -0.02 2.18 16 38 H 0.04 1.57 6.62 -2.39 -0.02 1.55 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 42 H 0.07 1.97 6.57 -2.39 -0.02 1.96 16 43 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 45 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -64.25 344.70 1.91 -62.34 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.37 Total: 16.70 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 4.79 Total: -26.40 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -2.31 Total: -78.31 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -2.96 Total: -21.01 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -64.25 1.91 -62.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724883532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.296 kcal (2) G-P(sol) polarization free energy of solvation -64.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds