Wall clock time and date at job start Mon Mar 30 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00229 * 2 1 4 4 H 1.09000 * 109.61156 * 29.77901 * 3 2 1 5 5 C 1.53181 * 109.54236 * 269.55730 * 3 2 1 6 6 C 1.53091 * 109.16103 * 183.14950 * 5 3 2 7 7 O 1.42909 * 109.41460 * 57.60820 * 6 5 3 8 8 C 1.42898 * 114.09760 * 298.84235 * 7 6 5 9 9 C 1.53090 * 109.41508 * 61.15768 * 8 7 6 10 10 H 1.09002 * 109.58002 * 62.32903 * 9 8 7 11 11 N 1.46902 * 109.52414 * 182.48261 * 9 8 7 12 12 C 1.46898 * 111.00157 * 274.68715 * 11 9 8 13 13 C 1.52997 * 109.47123 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47164 * 299.99884 * 13 12 11 15 15 C 1.52999 * 109.47592 * 59.99590 * 13 12 11 16 16 C 1.52997 * 109.47232 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 13 12 18 18 H 1.07998 * 120.00129 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99861 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00346 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99914 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47135 * 89.99612 * 21 19 17 23 23 H 1.48504 * 109.46987 * 210.00073 * 21 19 17 24 24 H 1.48503 * 109.46980 * 329.99543 * 21 19 17 25 25 H 1.08994 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46750 * 300.00212 * 1 2 3 27 27 H 1.08998 * 109.47175 * 59.99901 * 1 2 3 28 28 H 1.08999 * 109.52269 * 303.05760 * 5 3 2 29 29 H 1.09001 * 109.51954 * 63.24658 * 5 3 2 30 30 H 1.08996 * 109.48013 * 177.59228 * 6 5 3 31 31 H 1.09001 * 109.48401 * 297.62941 * 6 5 3 32 32 H 1.08993 * 109.48521 * 301.17258 * 8 7 6 33 33 H 1.09006 * 109.48099 * 181.13690 * 8 7 6 34 34 H 1.00898 * 111.00159 * 150.73042 * 11 9 8 35 35 H 1.09001 * 109.47062 * 59.99599 * 12 11 9 36 36 H 1.09002 * 109.46774 * 299.99237 * 12 11 9 37 37 H 1.09001 * 109.46801 * 180.02562 * 14 13 12 38 38 H 1.09001 * 109.46998 * 299.99705 * 14 13 12 39 39 H 1.09000 * 109.47050 * 59.99996 * 14 13 12 40 40 H 1.09000 * 109.47160 * 300.00333 * 15 13 12 41 41 H 1.09002 * 109.46719 * 60.00054 * 15 13 12 42 42 H 1.08993 * 109.47839 * 179.97438 * 15 13 12 43 43 H 1.09002 * 109.47153 * 299.99992 * 16 13 12 44 44 H 1.09001 * 109.47289 * 60.00075 * 16 13 12 45 45 H 0.96993 * 120.00442 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0022 0.5099 5 6 2.2289 1.7690 -1.4435 6 6 2.9233 3.1333 -1.4335 7 8 4.1578 3.0328 -0.7205 8 6 4.0115 2.6488 0.6482 9 6 3.3608 1.2650 0.7217 10 1 4.0083 0.5310 0.2421 11 7 3.1549 0.8934 2.1280 12 6 4.3633 0.2774 2.6920 13 6 4.1110 -0.0945 4.1545 14 6 3.7631 1.1661 4.9486 15 6 2.9481 -1.0854 4.2355 16 6 5.3694 -0.7368 4.7418 17 6 5.1211 -1.1025 6.1825 18 1 4.1618 -0.8971 6.6342 19 6 6.1189 -1.6985 6.9243 20 7 7.2872 -1.9483 6.3744 21 14 5.8114 -2.1513 8.7103 22 1 5.2724 -3.5330 8.7850 23 1 7.0870 -2.0758 9.4668 24 1 4.8301 -1.2047 9.2990 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.8540 1.0460 -1.9676 29 1 1.2667 1.8537 -1.9485 30 1 3.1200 3.4487 -2.4581 31 1 2.2800 3.8651 -0.9448 32 1 3.3824 3.3742 1.1640 33 1 4.9921 2.6151 1.1231 34 1 2.3577 0.2831 2.2277 35 1 5.1917 0.9835 2.6347 36 1 4.6114 -0.6205 2.1260 37 1 3.5838 0.9012 5.9906 38 1 4.5916 1.8721 4.8910 39 1 2.8664 1.6233 4.5301 40 1 2.0514 -0.6283 3.8170 41 1 3.1959 -1.9835 3.6698 42 1 2.7686 -1.3507 5.2773 43 1 5.6169 -1.6349 4.1760 44 1 6.1982 -0.0312 4.6842 45 1 7.9890 -2.3679 6.8961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724883538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:31 Heat of formation + Delta-G solvation = -110.355520 kcal Electronic energy + Delta-G solvation = -22236.257649 eV Core-core repulsion = 19060.145638 eV Total energy + Delta-G solvation = -3176.112011 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01923 -37.55363 -37.38933 -34.37757 -32.38220 -31.96179 -29.27456 -27.07379 -26.81377 -26.30661 -25.28673 -24.28236 -23.13131 -21.77241 -20.48715 -17.92602 -17.04080 -16.59396 -16.20712 -16.17532 -15.54463 -15.18017 -14.69691 -14.46976 -14.39789 -13.94579 -13.61618 -13.29641 -13.10031 -12.69711 -12.43989 -12.15037 -12.04562 -11.95068 -11.72978 -11.38059 -11.10756 -10.95264 -10.85192 -10.75552 -10.47371 -10.46769 -10.21737 -10.10554 -9.85679 -9.74850 -9.64074 -8.97946 -8.79004 -8.28801 -8.11850 -5.93229 -3.93323 3.35186 3.41750 3.44556 3.46297 3.70680 4.32103 4.50652 4.52308 4.68638 4.83273 4.91956 5.06731 5.11022 5.16798 5.31423 5.34144 5.42533 5.47297 5.50707 5.58476 5.72123 5.75000 5.85996 5.90838 5.96832 6.03455 6.30960 6.35791 6.55073 6.68118 6.80945 6.85240 6.97043 6.99517 7.23941 7.27225 7.28720 7.41978 7.68860 7.74510 7.89467 8.07187 8.51566 9.12074 9.69312 11.18476 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.003975 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.367409 B = 7042.688124 C = 7563.647057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.085 3.915 4 H 0.070 0.930 5 C -0.176 4.176 6 C 0.063 3.937 7 O -0.382 6.382 8 C 0.074 3.926 9 C 0.057 3.943 10 H 0.058 0.942 11 N -0.677 5.677 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.116 4.116 15 C -0.128 4.128 16 C 0.034 3.966 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.347 0.653 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.054 0.946 38 H 0.039 0.961 39 H 0.041 0.959 40 H 0.032 0.968 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.013 0.987 44 H 0.015 0.985 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 8.514 -15.073 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.027 3.973 4 H 0.088 0.912 5 C -0.214 4.214 6 C -0.014 4.014 7 O -0.300 6.300 8 C -0.004 4.004 9 C -0.054 4.054 10 H 0.076 0.924 11 N -0.312 5.312 12 C -0.059 4.059 13 C -0.058 4.058 14 C -0.173 4.173 15 C -0.185 4.185 16 C -0.004 4.004 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.168 0.832 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.298 8.940 -14.886 21.278 hybrid contribution -0.547 -1.163 0.642 1.437 sum -12.845 7.777 -14.244 20.697 Atomic orbital electron populations 1.22799 0.81006 1.02855 0.99903 1.87941 1.19737 1.27434 1.94890 1.22360 0.95028 0.85101 0.94813 0.91234 1.22734 1.01911 0.98956 0.97810 1.22524 0.86267 0.95113 0.97476 1.87961 1.29451 1.88982 1.23601 1.22615 1.02235 0.93705 0.81806 1.22222 0.94759 0.98277 0.90123 0.92357 1.60579 1.07825 1.49057 1.13734 1.22181 0.91195 0.96430 0.96097 1.20625 0.98121 0.95440 0.91638 1.21603 0.99521 0.96363 0.99829 1.21754 0.96434 0.98115 1.02211 1.19124 0.90750 0.95168 0.95350 1.21239 0.98546 1.38502 0.96186 0.92316 1.25013 0.95280 0.96206 0.98075 1.69964 1.03769 1.43540 1.36467 0.86672 0.77492 0.78763 0.85537 1.20852 1.21382 1.19929 0.89559 0.93703 0.94313 0.90107 0.90783 0.88676 0.93094 0.92191 0.88033 0.83185 0.91593 0.95571 0.92689 0.94151 0.94010 0.94920 0.94048 0.91783 0.96894 0.96660 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.83 101.05 1.09 1.37 16 2 O -0.38 -4.64 9.66 -35.23 -0.34 -4.98 16 3 C 0.09 0.96 2.20 -26.55 -0.06 0.90 16 4 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 5 C -0.18 -1.66 5.76 -26.59 -0.15 -1.81 16 6 C 0.06 0.58 6.84 37.20 0.25 0.84 16 7 O -0.38 -4.75 10.77 -35.23 -0.38 -5.13 16 8 C 0.07 0.93 6.34 37.20 0.24 1.16 16 9 C 0.06 0.76 2.40 -67.57 -0.16 0.60 16 10 H 0.06 0.88 7.80 -51.93 -0.41 0.47 16 11 N -0.68 -10.07 5.52 -106.58 -0.59 -10.65 16 12 C 0.07 1.23 4.45 -3.83 -0.02 1.21 16 13 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 14 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 15 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 16 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 17 C -0.51 -13.95 7.65 -34.44 -0.26 -14.21 16 18 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 21 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 27 H 0.04 0.28 7.99 -51.93 -0.42 -0.14 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.57 7.99 -51.93 -0.42 0.15 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.34 7.54 -51.93 -0.39 0.94 16 34 H 0.35 5.22 5.82 -39.29 -0.23 4.99 16 35 H 0.07 1.18 7.51 -51.93 -0.39 0.79 16 36 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 37 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.72 7.60 -51.93 -0.39 0.32 16 40 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 345.87 15.07 5.21 5.21 Total: -1.00 -30.13 345.87 -7.31 -37.44 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.15 Total: 0.83 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 1.22 Total: -13.09 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.15 Total: -36.98 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.72 Total: -10.11 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.13 -7.31 -37.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724883538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.919 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds