Wall clock time and date at job start Mon Mar 30 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00229 * 2 1 4 4 H 1.09000 * 109.61156 * 29.77901 * 3 2 1 5 5 C 1.53181 * 109.54236 * 269.55730 * 3 2 1 6 6 C 1.53091 * 109.16103 * 183.14950 * 5 3 2 7 7 O 1.42909 * 109.41460 * 57.60820 * 6 5 3 8 8 C 1.42898 * 114.09760 * 298.84235 * 7 6 5 9 9 C 1.53090 * 109.41508 * 61.15768 * 8 7 6 10 10 H 1.09002 * 109.58002 * 62.32903 * 9 8 7 11 11 N 1.46902 * 109.52414 * 182.48261 * 9 8 7 12 12 C 1.46898 * 111.00157 * 274.68715 * 11 9 8 13 13 C 1.52997 * 109.47123 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47164 * 299.99884 * 13 12 11 15 15 C 1.52999 * 109.47592 * 59.99590 * 13 12 11 16 16 C 1.52997 * 109.47232 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 13 12 18 18 H 1.07998 * 120.00129 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99861 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00346 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99914 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47135 * 89.99612 * 21 19 17 23 23 H 1.48504 * 109.46987 * 210.00073 * 21 19 17 24 24 H 1.48503 * 109.46980 * 329.99543 * 21 19 17 25 25 H 1.08994 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46750 * 300.00212 * 1 2 3 27 27 H 1.08998 * 109.47175 * 59.99901 * 1 2 3 28 28 H 1.08999 * 109.52269 * 303.05760 * 5 3 2 29 29 H 1.09001 * 109.51954 * 63.24658 * 5 3 2 30 30 H 1.08996 * 109.48013 * 177.59228 * 6 5 3 31 31 H 1.09001 * 109.48401 * 297.62941 * 6 5 3 32 32 H 1.08993 * 109.48521 * 301.17258 * 8 7 6 33 33 H 1.09006 * 109.48099 * 181.13690 * 8 7 6 34 34 H 1.00898 * 111.00159 * 150.73042 * 11 9 8 35 35 H 1.09001 * 109.47062 * 59.99599 * 12 11 9 36 36 H 1.09002 * 109.46774 * 299.99237 * 12 11 9 37 37 H 1.09001 * 109.46801 * 180.02562 * 14 13 12 38 38 H 1.09001 * 109.46998 * 299.99705 * 14 13 12 39 39 H 1.09000 * 109.47050 * 59.99996 * 14 13 12 40 40 H 1.09000 * 109.47160 * 300.00333 * 15 13 12 41 41 H 1.09002 * 109.46719 * 60.00054 * 15 13 12 42 42 H 1.08993 * 109.47839 * 179.97438 * 15 13 12 43 43 H 1.09002 * 109.47153 * 299.99992 * 16 13 12 44 44 H 1.09001 * 109.47289 * 60.00075 * 16 13 12 45 45 H 0.96993 * 120.00442 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0022 0.5099 5 6 2.2289 1.7690 -1.4435 6 6 2.9233 3.1333 -1.4335 7 8 4.1578 3.0328 -0.7205 8 6 4.0115 2.6488 0.6482 9 6 3.3608 1.2650 0.7217 10 1 4.0083 0.5310 0.2421 11 7 3.1549 0.8934 2.1280 12 6 4.3633 0.2774 2.6920 13 6 4.1110 -0.0945 4.1545 14 6 3.7631 1.1661 4.9486 15 6 2.9481 -1.0854 4.2355 16 6 5.3694 -0.7368 4.7418 17 6 5.1211 -1.1025 6.1825 18 1 4.1618 -0.8971 6.6342 19 6 6.1189 -1.6985 6.9243 20 7 7.2872 -1.9483 6.3744 21 14 5.8114 -2.1513 8.7103 22 1 5.2724 -3.5330 8.7850 23 1 7.0870 -2.0758 9.4668 24 1 4.8301 -1.2047 9.2990 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.8540 1.0460 -1.9676 29 1 1.2667 1.8537 -1.9485 30 1 3.1200 3.4487 -2.4581 31 1 2.2800 3.8651 -0.9448 32 1 3.3824 3.3742 1.1640 33 1 4.9921 2.6151 1.1231 34 1 2.3577 0.2831 2.2277 35 1 5.1917 0.9835 2.6347 36 1 4.6114 -0.6205 2.1260 37 1 3.5838 0.9012 5.9906 38 1 4.5916 1.8721 4.8910 39 1 2.8664 1.6233 4.5301 40 1 2.0514 -0.6283 3.8170 41 1 3.1959 -1.9835 3.6698 42 1 2.7686 -1.3507 5.2773 43 1 5.6169 -1.6349 4.1760 44 1 6.1982 -0.0312 4.6842 45 1 7.9890 -2.3679 6.8961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724883538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:31 Heat of formation + Delta-G solvation = -130.674111 kcal Electronic energy + Delta-G solvation = -22237.138729 eV Core-core repulsion = 19060.145638 eV Total energy + Delta-G solvation = -3176.993091 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.95431 -38.95477 -38.37987 -35.79693 -34.25652 -32.92766 -30.49584 -28.78949 -27.92309 -27.74010 -26.77197 -25.15864 -24.70931 -23.09368 -21.42743 -19.54281 -18.32949 -17.93549 -17.60838 -17.07503 -16.56928 -16.44209 -16.08491 -15.71117 -15.53432 -15.10458 -14.96719 -14.70812 -14.34411 -14.02237 -13.89137 -13.60333 -13.46998 -12.99870 -12.82729 -12.76592 -12.67370 -12.48221 -12.25058 -12.18504 -12.13490 -11.96986 -11.79473 -11.43168 -11.32548 -10.88628 -10.80898 -10.71303 -10.50086 -10.48707 -9.40690 -8.13137 -6.20499 1.41518 1.42224 1.52947 2.44336 2.66386 2.79961 3.20774 3.28214 3.62989 3.83448 3.98780 4.04231 4.15153 4.20086 4.24862 4.38290 4.42999 4.47516 4.51499 4.61220 4.69350 4.73792 4.77710 4.81258 4.86741 4.88688 4.95990 5.01839 5.08045 5.12670 5.21315 5.21927 5.51808 5.53674 5.59087 5.64453 5.86873 5.90643 5.93775 6.20660 6.26298 6.36991 6.44362 6.94605 7.46924 8.99402 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.003975 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.367409 B = 7042.688124 C = 7563.647057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.088 3.912 4 H 0.083 0.917 5 C -0.169 4.169 6 C 0.057 3.943 7 O -0.401 6.401 8 C 0.079 3.921 9 C 0.057 3.943 10 H 0.034 0.966 11 N -0.665 5.665 12 C 0.083 3.917 13 C -0.054 4.054 14 C -0.106 4.106 15 C -0.120 4.120 16 C 0.040 3.960 17 C -0.514 4.514 18 H 0.067 0.933 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.957 3.043 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.261 1.261 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.349 0.651 35 H 0.060 0.940 36 H 0.010 0.990 37 H 0.039 0.961 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.031 0.969 42 H 0.049 0.951 43 H -0.020 1.020 44 H -0.015 1.015 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.518 9.643 -15.293 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.030 3.970 4 H 0.101 0.899 5 C -0.207 4.207 6 C -0.019 4.019 7 O -0.319 6.319 8 C 0.001 3.999 9 C -0.054 4.054 10 H 0.052 0.948 11 N -0.299 5.299 12 C -0.047 4.047 13 C -0.054 4.054 14 C -0.163 4.163 15 C -0.178 4.178 16 C 0.002 3.998 17 C -0.552 4.552 18 H 0.085 0.915 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.782 3.218 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.185 1.185 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.133 0.867 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.170 0.830 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.068 0.932 43 H -0.001 1.001 44 H 0.003 0.997 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.937 10.080 -15.117 23.521 hybrid contribution 0.255 -1.512 0.621 1.654 sum -14.681 8.568 -14.497 22.341 Atomic orbital electron populations 1.22985 0.79255 1.03741 1.01115 1.87912 1.21722 1.27957 1.95096 1.22344 0.93684 0.85267 0.95707 0.89877 1.22687 1.02913 0.98556 0.96581 1.22787 0.85376 0.95377 0.98350 1.87940 1.31580 1.88954 1.23428 1.22485 1.01597 0.93408 0.82368 1.22264 0.96218 0.98020 0.88915 0.94774 1.60517 1.06315 1.48103 1.15015 1.21881 0.92453 0.95812 0.94521 1.20487 0.95994 0.95982 0.92984 1.21501 1.00440 0.95589 0.98801 1.21663 0.97085 0.97621 1.01389 1.19007 0.92485 0.93398 0.94897 1.21616 0.98753 1.37782 0.97038 0.91454 1.25935 0.95027 0.96307 1.02857 1.70113 1.04852 1.44715 1.38350 0.85561 0.77542 0.78794 0.79860 1.20131 1.21276 1.18536 0.88970 0.93002 0.92536 0.91682 0.88282 0.86748 0.91315 0.91025 0.89501 0.83000 0.92193 0.97166 0.94163 0.94830 0.91228 0.91609 0.94933 0.93178 1.00125 0.99656 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.83 113.37 1.23 1.60 16 2 O -0.41 -9.15 9.66 -148.98 -1.44 -10.59 16 3 C 0.09 1.78 2.20 30.71 0.07 1.85 16 4 H 0.08 1.47 7.79 -2.39 -0.02 1.45 16 5 C -0.17 -2.79 5.76 30.69 0.18 -2.61 16 6 C 0.06 0.90 6.84 72.01 0.49 1.40 16 7 O -0.40 -9.46 10.77 -148.98 -1.60 -11.06 16 8 C 0.08 1.91 6.34 72.01 0.46 2.37 16 9 C 0.06 1.46 2.40 45.00 0.11 1.57 16 10 H 0.03 1.05 7.80 -2.39 -0.02 1.03 16 11 N -0.67 -19.03 5.52 -491.11 -2.71 -21.74 16 12 C 0.08 2.97 4.45 86.30 0.38 3.35 16 13 C -0.05 -2.19 0.60 -52.18 -0.03 -2.23 16 14 C -0.11 -4.00 8.06 71.98 0.58 -3.42 16 15 C -0.12 -4.48 7.89 71.98 0.57 -3.92 16 16 C 0.04 2.10 4.04 29.85 0.12 2.23 16 17 C -0.51 -28.76 7.65 25.60 0.20 -28.56 16 18 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 19 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 20 N -0.94 -58.22 13.29 21.45 0.28 -57.94 16 21 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.06 0.63 7.99 -2.39 -0.02 0.61 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.16 7.99 -2.39 -0.02 1.14 16 30 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 2.31 7.54 -2.38 -0.02 2.29 16 34 H 0.35 9.81 5.82 -89.70 -0.52 9.29 16 35 H 0.06 2.22 7.51 -2.39 -0.02 2.20 16 36 H 0.01 0.39 8.06 -2.39 -0.02 0.37 16 37 H 0.04 1.62 6.62 -2.39 -0.02 1.60 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 2.23 7.60 -2.39 -0.02 2.21 16 40 H 0.07 2.00 6.57 -2.39 -0.02 1.99 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 2.00 6.62 -2.39 -0.02 1.98 16 43 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 44 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -66.26 345.87 1.79 -64.47 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.42 Total: 16.22 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 4.81 Total: -26.18 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -2.43 Total: -79.68 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -3.04 Total: -21.65 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.26 1.79 -64.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724883538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.204 kcal (2) G-P(sol) polarization free energy of solvation -66.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds