Wall clock time and date at job start Mon Mar 30 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00061 * 2 1 4 4 H 1.48503 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47358 * 299.99824 * 3 2 1 6 6 H 1.48503 * 109.47048 * 59.99856 * 3 2 1 7 7 C 1.37875 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00035 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99948 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.46996 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.46931 * 65.00403 * 12 11 10 14 14 C 1.46897 * 111.00013 * 177.09415 * 13 12 11 15 15 H 1.09000 * 109.47464 * 174.45712 * 14 13 12 16 16 C 1.53004 * 109.47209 * 294.45851 * 14 13 12 17 17 C 1.52998 * 109.46916 * 295.62112 * 16 14 13 18 18 O 1.42897 * 109.47128 * 176.22971 * 17 16 14 19 19 C 1.53000 * 109.47356 * 54.45621 * 14 13 12 20 20 C 1.54264 * 110.03482 * 177.17106 * 19 14 13 21 21 C 1.54890 * 104.19461 * 217.10263 * 20 19 14 22 22 C 1.54893 * 102.74892 * 37.94314 * 21 20 19 23 23 C 1.53869 * 110.03298 * 60.00082 * 19 14 13 24 24 H 0.97005 * 120.00263 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47239 * 60.00140 * 9 7 2 26 26 H 1.09004 * 109.46798 * 300.00305 * 9 7 2 27 27 H 1.09000 * 109.47123 * 60.00038 * 11 10 9 28 28 H 1.09001 * 109.47612 * 300.00016 * 11 10 9 29 29 H 1.08991 * 109.46809 * 304.99936 * 12 11 10 30 30 H 1.09004 * 109.46928 * 184.99892 * 12 11 10 31 31 H 1.00903 * 111.00277 * 301.04275 * 13 12 11 32 32 H 1.08995 * 109.46892 * 55.61754 * 16 14 13 33 33 H 1.08997 * 109.47321 * 175.62352 * 16 14 13 34 34 H 1.08992 * 109.47419 * 296.23299 * 17 16 14 35 35 H 1.09008 * 109.47264 * 56.23497 * 17 16 14 36 36 H 0.96703 * 114.00357 * 179.97438 * 18 17 16 37 37 H 1.09005 * 110.01626 * 298.61479 * 19 14 13 38 38 H 1.08997 * 110.49071 * 335.78380 * 20 19 14 39 39 H 1.09000 * 110.48815 * 98.42966 * 20 19 14 40 40 H 1.08997 * 110.76299 * 279.62744 * 21 20 19 41 41 H 1.09002 * 110.91785 * 156.32905 * 21 20 19 42 42 H 1.08996 * 110.48593 * 203.38014 * 22 21 20 43 43 H 1.09001 * 110.59719 * 80.79133 * 22 21 20 44 44 H 1.09003 * 110.03760 * 238.57374 * 23 19 14 45 45 H 1.08999 * 110.03227 * 0.02562 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5650 -4.8754 0.0024 12 6 2.6480 -5.9562 0.0043 13 7 3.4069 -5.8867 1.2601 14 6 4.4124 -6.9555 1.3274 15 1 5.0248 -6.8226 2.2193 16 6 3.7101 -8.3134 1.3886 17 6 2.9059 -8.4136 2.6864 18 8 2.1803 -9.6445 2.7033 19 6 5.3025 -6.8973 0.0844 20 6 6.4079 -7.9695 0.1753 21 6 7.6511 -7.2872 -0.4476 22 6 7.5297 -5.8283 0.0583 23 6 6.0157 -5.5359 0.0100 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5566 0.8903 27 1 0.9452 -4.9831 -0.8878 28 1 0.9444 -4.9818 0.8922 29 1 3.3221 -5.7964 -0.8370 30 1 2.1820 -6.9376 -0.0847 31 1 3.8347 -4.9801 1.3744 32 1 3.0382 -8.4137 0.5363 33 1 4.4544 -9.1091 1.3602 34 1 3.5851 -8.3804 3.5382 35 1 2.2071 -7.5791 2.7462 36 1 1.6470 -9.7759 3.4992 37 1 4.7023 -7.0538 -0.8120 38 1 6.5987 -8.2336 1.2155 39 1 6.1302 -8.8534 -0.3989 40 1 7.6070 -7.3235 -1.5360 41 1 8.5703 -7.7468 -0.0842 42 1 8.0705 -5.1496 -0.6011 43 1 7.9021 -5.7442 1.0793 44 1 5.7624 -5.0321 -0.9228 45 1 5.7281 -4.9168 0.8597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725065541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:47 Heat of formation + Delta-G solvation = -125.729530 kcal Electronic energy + Delta-G solvation = -21678.911989 eV Core-core repulsion = 18502.133311 eV Total energy + Delta-G solvation = -3176.778678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.55507 -37.01488 -36.81116 -35.28137 -32.77943 -31.56504 -29.23846 -28.63082 -27.85827 -26.59755 -23.88854 -22.46677 -22.00623 -21.00200 -20.42410 -18.98975 -17.34198 -16.72144 -16.26380 -15.79001 -15.39600 -15.27533 -15.17700 -14.56412 -14.31913 -14.01606 -13.59630 -13.39642 -13.14185 -12.81004 -12.49797 -12.14180 -11.76086 -11.59902 -11.44985 -11.14830 -11.12985 -11.06938 -10.86755 -10.81839 -10.81021 -10.62791 -10.60027 -10.45006 -10.31180 -10.00185 -9.91130 -9.08563 -8.81792 -8.15981 -8.14166 -6.10907 -4.12538 3.28498 3.35049 3.41004 4.08550 4.34752 4.35312 4.53389 4.65549 4.69479 4.94237 5.04247 5.14780 5.22965 5.25735 5.36673 5.40225 5.47839 5.50880 5.57286 5.58007 5.60761 5.70919 5.76378 5.81446 5.83829 5.90685 6.03615 6.07570 6.11925 6.12619 6.23551 6.28948 6.31393 6.37292 6.42392 7.12630 7.24599 7.44900 7.58731 7.67390 7.79341 8.15985 8.59049 9.01156 9.52430 11.00692 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.004237 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.776114 B = 6607.057894 C = 7926.489562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.398 6.398 11 C 0.063 3.937 12 C 0.060 3.940 13 N -0.679 5.679 14 C 0.095 3.905 15 H 0.080 0.920 16 C -0.110 4.110 17 C 0.079 3.921 18 O -0.583 6.583 19 C -0.124 4.124 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.122 4.122 24 H 0.263 0.737 25 H 0.003 0.997 26 H 0.005 0.995 27 H 0.038 0.962 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.356 0.644 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.376 0.624 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.753 -17.379 2.821 20.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.318 6.318 11 C -0.015 4.015 12 C -0.069 4.069 13 N -0.311 5.311 14 C -0.015 4.015 15 H 0.098 0.902 16 C -0.148 4.148 17 C 0.001 3.999 18 O -0.388 6.388 19 C -0.144 4.144 20 C -0.154 4.154 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.160 4.160 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.023 0.977 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.177 0.823 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.223 0.777 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.603 -17.612 2.606 20.722 hybrid contribution 0.341 1.347 -0.144 1.397 sum 10.943 -16.266 2.463 19.758 Atomic orbital electron populations 1.69975 1.06105 1.27009 1.50667 1.24944 0.94951 0.99407 0.95197 0.86307 0.79999 0.82713 0.77620 1.19522 1.20874 1.20842 1.21086 0.93999 0.89403 1.50627 0.91604 1.20165 0.88726 0.83533 0.95309 1.87785 1.35677 1.13084 1.95211 1.22292 0.94592 0.85327 0.99284 1.22038 0.95841 0.97932 0.91121 1.60667 1.27256 1.07560 1.35618 1.21622 0.91541 0.91483 0.96866 0.90171 1.21561 0.99011 0.96398 0.97801 1.22168 0.94730 0.85842 0.97146 1.86429 1.65287 1.40878 1.46215 1.22493 0.96830 0.95310 0.99798 1.22390 0.94644 0.97549 1.00768 1.22496 0.97751 0.95777 1.00268 1.22339 0.96433 0.96331 1.00960 1.22193 0.94612 0.96523 1.02652 0.92729 0.97913 0.97703 0.94409 0.93791 0.94270 0.90600 0.82301 0.91214 0.91418 0.94400 0.91802 0.77734 0.90670 0.91566 0.91954 0.91757 0.91954 0.91908 0.91837 0.91541 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -15.04 9.43 -34.44 -0.32 -15.37 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.20 5.41 5.69 36.01 0.20 5.61 16 10 O -0.40 -9.38 9.89 -35.23 -0.35 -9.73 16 11 C 0.06 1.18 6.28 37.16 0.23 1.41 16 12 C 0.06 0.89 5.25 -3.82 -0.02 0.87 16 13 N -0.68 -9.49 5.66 -106.73 -0.60 -10.09 16 14 C 0.10 1.08 1.82 -67.71 -0.12 0.95 16 15 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 16 C -0.11 -1.22 4.83 -26.73 -0.13 -1.35 16 17 C 0.08 0.87 6.98 37.16 0.26 1.13 16 18 O -0.58 -6.54 13.66 -35.23 -0.48 -7.03 16 19 C -0.12 -1.35 1.90 -89.51 -0.17 -1.52 16 20 C -0.12 -1.07 5.24 -25.07 -0.13 -1.20 16 21 C -0.13 -1.14 6.91 -24.74 -0.17 -1.31 16 22 C -0.12 -1.24 6.83 -25.07 -0.17 -1.41 16 23 C -0.12 -1.45 6.03 -25.62 -0.15 -1.60 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.60 6.36 -51.93 -0.33 0.27 16 30 H 0.08 1.02 6.24 -51.93 -0.32 0.70 16 31 H 0.36 5.58 6.96 -39.29 -0.27 5.31 16 32 H 0.07 0.84 6.29 -51.93 -0.33 0.52 16 33 H 0.07 0.70 7.14 -51.93 -0.37 0.33 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.79 7.63 -51.92 -0.40 0.39 16 36 H 0.38 2.58 9.12 45.56 0.42 2.99 16 37 H 0.07 0.89 6.52 -51.93 -0.34 0.55 16 38 H 0.07 0.59 7.77 -51.93 -0.40 0.18 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.87 6.48 -51.93 -0.34 0.53 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -31.27 350.31 -8.54 -39.80 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.30 Total: 3.46 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -0.80 Total: -12.26 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.13 Total: -36.32 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.83 Total: -16.75 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.27 -8.54 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725065541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.928 kcal (2) G-P(sol) polarization free energy of solvation -31.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds