Wall clock time and date at job start Mon Mar 30 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00061 * 2 1 4 4 H 1.48503 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47358 * 299.99824 * 3 2 1 6 6 H 1.48503 * 109.47048 * 59.99856 * 3 2 1 7 7 C 1.37875 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00035 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99948 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.46996 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.46931 * 65.00403 * 12 11 10 14 14 C 1.46897 * 111.00013 * 177.09415 * 13 12 11 15 15 H 1.09000 * 109.47464 * 174.45712 * 14 13 12 16 16 C 1.53004 * 109.47209 * 294.45851 * 14 13 12 17 17 C 1.52998 * 109.46916 * 295.62112 * 16 14 13 18 18 O 1.42897 * 109.47128 * 176.22971 * 17 16 14 19 19 C 1.53000 * 109.47356 * 54.45621 * 14 13 12 20 20 C 1.54264 * 110.03482 * 177.17106 * 19 14 13 21 21 C 1.54890 * 104.19461 * 217.10263 * 20 19 14 22 22 C 1.54893 * 102.74892 * 37.94314 * 21 20 19 23 23 C 1.53869 * 110.03298 * 60.00082 * 19 14 13 24 24 H 0.97005 * 120.00263 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47239 * 60.00140 * 9 7 2 26 26 H 1.09004 * 109.46798 * 300.00305 * 9 7 2 27 27 H 1.09000 * 109.47123 * 60.00038 * 11 10 9 28 28 H 1.09001 * 109.47612 * 300.00016 * 11 10 9 29 29 H 1.08991 * 109.46809 * 304.99936 * 12 11 10 30 30 H 1.09004 * 109.46928 * 184.99892 * 12 11 10 31 31 H 1.00903 * 111.00277 * 301.04275 * 13 12 11 32 32 H 1.08995 * 109.46892 * 55.61754 * 16 14 13 33 33 H 1.08997 * 109.47321 * 175.62352 * 16 14 13 34 34 H 1.08992 * 109.47419 * 296.23299 * 17 16 14 35 35 H 1.09008 * 109.47264 * 56.23497 * 17 16 14 36 36 H 0.96703 * 114.00357 * 179.97438 * 18 17 16 37 37 H 1.09005 * 110.01626 * 298.61479 * 19 14 13 38 38 H 1.08997 * 110.49071 * 335.78380 * 20 19 14 39 39 H 1.09000 * 110.48815 * 98.42966 * 20 19 14 40 40 H 1.08997 * 110.76299 * 279.62744 * 21 20 19 41 41 H 1.09002 * 110.91785 * 156.32905 * 21 20 19 42 42 H 1.08996 * 110.48593 * 203.38014 * 22 21 20 43 43 H 1.09001 * 110.59719 * 80.79133 * 22 21 20 44 44 H 1.09003 * 110.03760 * 238.57374 * 23 19 14 45 45 H 1.08999 * 110.03227 * 0.02562 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5650 -4.8754 0.0024 12 6 2.6480 -5.9562 0.0043 13 7 3.4069 -5.8867 1.2601 14 6 4.4124 -6.9555 1.3274 15 1 5.0248 -6.8226 2.2193 16 6 3.7101 -8.3134 1.3886 17 6 2.9059 -8.4136 2.6864 18 8 2.1803 -9.6445 2.7033 19 6 5.3025 -6.8973 0.0844 20 6 6.4079 -7.9695 0.1753 21 6 7.6511 -7.2872 -0.4476 22 6 7.5297 -5.8283 0.0583 23 6 6.0157 -5.5359 0.0100 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5566 0.8903 27 1 0.9452 -4.9831 -0.8878 28 1 0.9444 -4.9818 0.8922 29 1 3.3221 -5.7964 -0.8370 30 1 2.1820 -6.9376 -0.0847 31 1 3.8347 -4.9801 1.3744 32 1 3.0382 -8.4137 0.5363 33 1 4.4544 -9.1091 1.3602 34 1 3.5851 -8.3804 3.5382 35 1 2.2071 -7.5791 2.7462 36 1 1.6470 -9.7759 3.4992 37 1 4.7023 -7.0538 -0.8120 38 1 6.5987 -8.2336 1.2155 39 1 6.1302 -8.8534 -0.3989 40 1 7.6070 -7.3235 -1.5360 41 1 8.5703 -7.7468 -0.0842 42 1 8.0705 -5.1496 -0.6011 43 1 7.9021 -5.7442 1.0793 44 1 5.7624 -5.0321 -0.9228 45 1 5.7281 -4.9168 0.8597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725065541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:46 Heat of formation + Delta-G solvation = -148.186881 kcal Electronic energy + Delta-G solvation = -21679.885813 eV Core-core repulsion = 18502.133311 eV Total energy + Delta-G solvation = -3177.752502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51833 -38.60998 -37.78435 -36.41370 -34.91430 -32.76203 -30.39481 -29.50379 -29.32236 -28.27402 -24.83620 -24.54093 -23.42911 -21.85042 -21.28428 -19.98218 -18.67248 -18.19383 -17.72623 -17.19751 -16.80793 -16.46727 -16.34740 -16.13007 -15.61103 -15.24858 -14.86733 -14.67599 -14.25719 -13.95254 -13.76282 -13.43662 -13.25703 -13.02672 -12.84445 -12.70842 -12.46013 -12.25656 -12.10839 -11.96007 -11.90479 -11.76071 -11.63964 -11.60366 -11.42297 -11.29894 -11.22757 -10.87353 -10.76895 -10.22825 -9.26386 -8.32538 -6.44827 1.39588 1.40909 1.55434 2.34109 3.01569 3.18514 3.22726 3.33591 3.70752 3.79121 3.86624 4.11877 4.19942 4.25781 4.39130 4.39678 4.54859 4.55519 4.57386 4.59946 4.70045 4.72747 4.75150 4.81882 4.83964 4.88725 4.97915 4.98612 5.06653 5.09406 5.17501 5.24742 5.25707 5.28945 5.37414 5.44839 5.51395 5.54754 5.95537 6.13470 6.44748 6.53257 6.81711 6.93712 7.27262 8.80159 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.004237 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.776114 B = 6607.057894 C = 7926.489562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.211 3.789 10 O -0.404 6.404 11 C 0.056 3.944 12 C 0.074 3.926 13 N -0.684 5.684 14 C 0.102 3.898 15 H 0.089 0.911 16 C -0.105 4.105 17 C 0.081 3.919 18 O -0.598 6.598 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.124 4.124 24 H 0.270 0.730 25 H -0.017 1.017 26 H -0.016 1.016 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.096 0.904 31 H 0.345 0.655 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.394 0.606 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.338 -17.975 3.220 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.136 3.864 10 O -0.324 6.324 11 C -0.021 4.021 12 C -0.055 4.055 13 N -0.315 5.315 14 C -0.008 4.008 15 H 0.107 0.893 16 C -0.143 4.143 17 C 0.003 3.997 18 O -0.406 6.406 19 C -0.140 4.140 20 C -0.149 4.149 21 C -0.159 4.159 22 C -0.159 4.159 23 C -0.162 4.162 24 H 0.079 0.921 25 H 0.000 1.000 26 H 0.002 0.998 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.164 0.836 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.243 0.757 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.180 -18.248 3.015 22.146 hybrid contribution -0.210 1.447 -0.246 1.483 sum 11.970 -16.800 2.769 20.813 Atomic orbital electron populations 1.70082 1.07813 1.28556 1.50645 1.25955 0.95918 1.03388 0.93950 0.85141 0.78697 0.77365 0.78232 1.18743 1.19750 1.19681 1.21400 0.94071 0.90739 1.52010 0.91931 1.19784 0.88608 0.84753 0.93239 1.87757 1.35295 1.14169 1.95167 1.22587 0.96138 0.84069 0.99334 1.21902 0.94867 0.97105 0.91630 1.60677 1.28251 1.07702 1.34871 1.21646 0.91033 0.90719 0.97439 0.89301 1.21525 0.99088 0.96285 0.97431 1.22108 0.94604 0.85346 0.97609 1.86381 1.65743 1.40676 1.47785 1.22422 0.97166 0.95414 0.98975 1.22375 0.93830 0.97070 1.01581 1.22489 0.98387 0.94842 1.00212 1.22340 0.94849 0.97249 1.01494 1.22176 0.96323 0.96783 1.00918 0.92080 0.99972 0.99843 0.93969 0.94087 0.94553 0.88616 0.83565 0.92288 0.90102 0.93052 0.93438 0.75676 0.91718 0.90583 0.91143 0.91915 0.90332 0.92021 0.91121 0.93643 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.98 44.51 29.54 68.60 2.03 46.53 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.54 -32.57 9.43 25.60 0.24 -32.33 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.21 12.03 5.69 71.24 0.41 12.44 16 10 O -0.40 -19.65 9.89 -148.98 -1.47 -21.13 16 11 C 0.06 2.14 6.28 71.99 0.45 2.59 16 12 C 0.07 2.20 5.25 86.31 0.45 2.66 16 13 N -0.68 -19.01 5.66 -491.58 -2.78 -21.79 16 14 C 0.10 2.17 1.82 44.92 0.08 2.25 16 15 H 0.09 1.79 8.12 -2.39 -0.02 1.77 16 16 C -0.11 -2.15 4.83 30.59 0.15 -2.00 16 17 C 0.08 1.67 6.98 71.98 0.50 2.17 16 18 O -0.60 -12.37 13.66 -148.98 -2.03 -14.41 16 19 C -0.12 -2.48 1.90 -10.07 -0.02 -2.50 16 20 C -0.11 -1.79 5.24 31.67 0.17 -1.63 16 21 C -0.12 -1.95 6.91 31.89 0.22 -1.73 16 22 C -0.12 -2.31 6.83 31.67 0.22 -2.10 16 23 C -0.12 -2.92 6.03 31.32 0.19 -2.73 16 24 H 0.27 15.14 8.31 -92.70 -0.77 14.36 16 25 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.11 6.36 -2.39 -0.02 1.10 16 30 H 0.10 2.50 6.24 -2.39 -0.01 2.49 16 31 H 0.35 10.99 6.96 -89.69 -0.62 10.37 16 32 H 0.06 1.33 6.29 -2.39 -0.02 1.32 16 33 H 0.08 1.46 7.14 -2.39 -0.02 1.44 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 1.13 7.63 -2.38 -0.02 1.11 16 36 H 0.39 4.74 9.12 -74.06 -0.68 4.06 16 37 H 0.06 1.49 6.52 -2.38 -0.02 1.47 16 38 H 0.08 1.11 7.77 -2.39 -0.02 1.09 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.42 6.48 -2.39 -0.02 1.40 16 Total: -1.00 -67.00 350.31 -0.80 -67.79 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -0.34 Total: 21.26 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 3.52 Total: -22.07 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -2.50 Total: -77.98 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -3.51 Total: -35.54 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.00 -0.80 -67.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725065541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.392 kcal (2) G-P(sol) polarization free energy of solvation -66.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds