Wall clock time and date at job start Mon Mar 30 2020 04:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.46897 * 2 1 4 4 C 1.34233 * 116.99576 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00389 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99445 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.50876 * 54.91577 * 6 4 3 8 8 C 1.53105 * 109.54217 * 294.80262 * 6 4 3 9 9 N 1.47015 * 109.25768 * 183.19581 * 8 6 4 10 10 C 1.46894 * 110.99960 * 182.39041 * 9 8 6 11 11 C 1.52997 * 109.47515 * 302.41397 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00241 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99936 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00183 * 17 15 13 21 21 C 1.47023 * 110.75153 * 58.61524 * 9 8 6 22 22 C 1.53095 * 109.25658 * 301.38476 * 21 9 8 23 23 O 1.43010 * 109.25990 * 56.85136 * 22 21 9 24 24 H 1.08997 * 109.46783 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47086 * 300.00239 * 1 2 3 26 26 H 1.09006 * 109.46793 * 60.00657 * 1 2 3 27 27 H 1.08994 * 109.47629 * 239.99256 * 2 1 3 28 28 H 1.09006 * 109.46793 * 119.99343 * 2 1 3 29 29 H 1.08996 * 109.50540 * 63.26618 * 8 6 4 30 30 H 1.09001 * 109.50449 * 303.12954 * 8 6 4 31 31 H 1.09002 * 109.47104 * 182.41129 * 10 9 8 32 32 H 1.08998 * 109.46828 * 62.41961 * 10 9 8 33 33 H 1.09002 * 109.47153 * 59.99762 * 11 10 9 34 34 H 1.09001 * 109.46832 * 299.99953 * 11 10 9 35 35 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 36 36 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 37 37 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.50243 * 61.32109 * 21 9 8 39 39 H 1.09001 * 109.50368 * 181.44451 * 21 9 8 40 40 H 1.09006 * 109.49938 * 176.77940 * 22 21 9 41 41 H 1.08995 * 109.50572 * 296.86536 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5137 3.5000 0.8402 8 6 3.5577 3.6413 -1.3104 9 7 4.1862 4.9700 -1.3373 10 6 3.8161 5.7028 -2.5555 11 6 4.2245 4.8882 -3.7846 12 6 3.8396 5.6518 -5.0533 13 6 4.2413 4.8492 -6.2640 14 1 4.7233 3.8906 -6.1407 15 6 3.9934 5.3387 -7.5289 16 7 3.4061 6.5057 -7.6789 17 14 4.4920 4.3441 -9.0295 18 1 3.3733 3.4514 -9.4256 19 1 4.8109 5.2649 -10.1500 20 1 5.6879 3.5255 -8.7058 21 6 5.6469 4.8580 -1.2131 22 6 5.9888 4.1420 0.0962 23 8 5.3441 2.8656 0.1182 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 2.4752 3.7493 -1.3777 30 1 3.9184 3.0508 -2.1526 31 1 4.3284 6.6648 -2.5706 32 1 2.7384 5.8649 -2.5687 33 1 3.7123 3.9262 -3.7695 34 1 5.3023 4.7262 -3.7713 35 1 2.7618 5.8142 -5.0668 36 1 4.3521 6.6136 -5.0682 37 1 3.2313 6.8499 -8.5688 38 1 6.0409 4.2871 -2.0539 39 1 6.0893 5.8542 -1.2096 40 1 7.0681 4.0058 0.1653 41 1 5.6426 4.7400 0.9392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741247996.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:04 Heat of formation + Delta-G solvation = -135.721563 kcal Electronic energy + Delta-G solvation = -21343.626277 eV Core-core repulsion = 18030.581217 eV Total energy + Delta-G solvation = -3313.045060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84763 -39.43135 -36.88359 -36.21847 -33.47882 -32.38433 -31.31817 -31.25419 -28.20567 -25.88267 -24.81770 -23.53755 -22.78917 -21.37073 -20.98687 -19.50001 -18.01000 -17.09175 -16.79112 -16.35194 -16.15472 -15.63449 -15.21011 -14.72001 -14.49515 -14.23435 -14.02085 -13.85545 -13.58281 -13.06243 -12.87059 -12.29779 -12.20489 -12.02454 -11.88663 -11.81019 -11.46002 -11.26796 -10.99344 -10.89865 -10.75387 -10.72490 -10.56548 -10.31629 -9.82621 -9.68576 -9.48898 -9.21854 -8.37576 -8.09193 -6.02518 -4.05212 2.02668 2.15246 3.30058 3.36388 3.40172 3.72476 4.00821 4.43955 4.53763 4.63635 4.70705 4.75490 4.85813 4.97478 5.03644 5.19722 5.23422 5.33125 5.43753 5.48038 5.54304 5.60669 5.72336 5.74185 5.78380 5.87126 5.98505 6.19450 6.23497 6.47842 6.66292 6.83070 6.94789 7.07451 7.21131 7.62531 7.62743 7.76064 7.96395 8.39659 9.01518 9.59237 11.08514 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.004271 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.305399 B = 6554.079045 C = 7523.685911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.472 3.528 5 O -0.487 6.487 6 C 0.107 3.893 7 H 0.104 0.896 8 C 0.026 3.974 9 N -0.534 5.534 10 C 0.053 3.947 11 C -0.147 4.147 12 C 0.026 3.974 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.008 3.992 22 C 0.067 3.933 23 O -0.364 6.364 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 -7.007 18.436 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.270 6.270 4 C 0.312 3.688 5 O -0.373 6.373 6 C 0.047 3.953 7 H 0.121 0.879 8 C -0.102 4.102 9 N -0.258 5.258 10 C -0.074 4.074 11 C -0.186 4.186 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.121 4.121 22 C -0.009 4.009 23 O -0.282 6.282 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.374 -7.111 18.735 20.179 hybrid contribution 0.483 -0.856 -1.738 1.997 sum -1.890 -7.966 16.997 18.866 Atomic orbital electron populations 1.21816 0.92334 1.03036 1.03795 1.23078 0.95507 0.79780 1.02766 1.86480 1.23633 1.32804 1.84119 1.23093 0.80918 0.91730 0.73042 1.90681 1.60379 1.42607 1.43613 1.21401 0.83731 0.89524 1.00620 0.87852 1.22649 1.01551 0.90904 0.95116 1.62587 1.07975 1.15652 1.39577 1.22377 1.01487 0.97046 0.86470 1.22252 1.00169 0.99473 0.96689 1.19011 0.96757 0.95245 0.90192 1.21247 1.39028 1.04612 0.91110 0.92913 1.25011 0.95224 0.95016 0.99090 1.69956 1.42584 1.18197 1.22707 0.86617 0.78949 0.79982 0.82615 1.20640 1.21147 1.19911 1.22868 0.89448 1.01810 0.97939 1.22800 0.97675 0.83454 0.96976 1.88029 1.16185 1.29616 1.94403 0.90166 0.91427 0.91112 0.90961 0.91184 0.88326 0.92310 0.90544 0.90542 0.93221 0.93254 0.96521 0.96545 0.92976 0.92742 0.89156 0.87755 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.35 -4.30 10.22 -39.27 -0.40 -4.70 16 4 C 0.47 6.67 7.29 36.01 0.26 6.93 16 5 O -0.49 -8.32 16.26 -25.45 -0.41 -8.73 16 6 C 0.11 1.40 3.33 -27.83 -0.09 1.31 16 7 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 8 C 0.03 0.37 4.39 -3.71 -0.02 0.36 16 9 N -0.53 -7.59 4.94 -234.31 -1.16 -8.75 16 10 C 0.05 0.87 5.38 -3.83 -0.02 0.85 16 11 C -0.15 -2.97 4.44 -26.73 -0.12 -3.09 16 12 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 13 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 17 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.01 0.10 5.33 -3.71 -0.02 0.08 16 22 C 0.07 0.76 7.01 37.21 0.26 1.02 16 23 O -0.36 -5.23 10.01 -55.10 -0.55 -5.79 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.06 0.96 6.41 -51.93 -0.33 0.62 16 31 H 0.08 1.23 8.11 -51.93 -0.42 0.80 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.05 1.02 6.42 -51.93 -0.33 0.68 16 34 H 0.05 1.01 6.61 -51.93 -0.34 0.66 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.05 0.82 6.59 -51.93 -0.34 0.47 16 39 H 0.09 1.05 8.12 -51.93 -0.42 0.63 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -32.78 334.74 -8.25 -41.03 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.81 Total: -3.25 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.32 Total: -5.51 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.42 Total: -34.89 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -1.37 Total: -19.22 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.78 -8.25 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741247996.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.692 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds