Wall clock time and date at job start Mon Mar 30 2020 04:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.46897 * 2 1 4 4 C 1.34233 * 116.99576 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00389 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99445 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.50876 * 54.91577 * 6 4 3 8 8 C 1.53105 * 109.54217 * 294.80262 * 6 4 3 9 9 N 1.47015 * 109.25768 * 183.19581 * 8 6 4 10 10 C 1.46894 * 110.99960 * 182.39041 * 9 8 6 11 11 C 1.52997 * 109.47515 * 302.41397 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00241 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99936 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00183 * 17 15 13 21 21 C 1.47023 * 110.75153 * 58.61524 * 9 8 6 22 22 C 1.53095 * 109.25658 * 301.38476 * 21 9 8 23 23 O 1.43010 * 109.25990 * 56.85136 * 22 21 9 24 24 H 1.08997 * 109.46783 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47086 * 300.00239 * 1 2 3 26 26 H 1.09006 * 109.46793 * 60.00657 * 1 2 3 27 27 H 1.08994 * 109.47629 * 239.99256 * 2 1 3 28 28 H 1.09006 * 109.46793 * 119.99343 * 2 1 3 29 29 H 1.08996 * 109.50540 * 63.26618 * 8 6 4 30 30 H 1.09001 * 109.50449 * 303.12954 * 8 6 4 31 31 H 1.09002 * 109.47104 * 182.41129 * 10 9 8 32 32 H 1.08998 * 109.46828 * 62.41961 * 10 9 8 33 33 H 1.09002 * 109.47153 * 59.99762 * 11 10 9 34 34 H 1.09001 * 109.46832 * 299.99953 * 11 10 9 35 35 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 36 36 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 37 37 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.50243 * 61.32109 * 21 9 8 39 39 H 1.09001 * 109.50368 * 181.44451 * 21 9 8 40 40 H 1.09006 * 109.49938 * 176.77940 * 22 21 9 41 41 H 1.08995 * 109.50572 * 296.86536 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5137 3.5000 0.8402 8 6 3.5577 3.6413 -1.3104 9 7 4.1862 4.9700 -1.3373 10 6 3.8161 5.7028 -2.5555 11 6 4.2245 4.8882 -3.7846 12 6 3.8396 5.6518 -5.0533 13 6 4.2413 4.8492 -6.2640 14 1 4.7233 3.8906 -6.1407 15 6 3.9934 5.3387 -7.5289 16 7 3.4061 6.5057 -7.6789 17 14 4.4920 4.3441 -9.0295 18 1 3.3733 3.4514 -9.4256 19 1 4.8109 5.2649 -10.1500 20 1 5.6879 3.5255 -8.7058 21 6 5.6469 4.8580 -1.2131 22 6 5.9888 4.1420 0.0962 23 8 5.3441 2.8656 0.1182 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 2.4752 3.7493 -1.3777 30 1 3.9184 3.0508 -2.1526 31 1 4.3284 6.6648 -2.5706 32 1 2.7384 5.8649 -2.5687 33 1 3.7123 3.9262 -3.7695 34 1 5.3023 4.7262 -3.7713 35 1 2.7618 5.8142 -5.0668 36 1 4.3521 6.6136 -5.0682 37 1 3.2313 6.8499 -8.5688 38 1 6.0409 4.2871 -2.0539 39 1 6.0893 5.8542 -1.2096 40 1 7.0681 4.0058 0.1653 41 1 5.6426 4.7400 0.9392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741247996.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:04 Heat of formation + Delta-G solvation = -157.183933 kcal Electronic energy + Delta-G solvation = -21344.556955 eV Core-core repulsion = 18030.581217 eV Total energy + Delta-G solvation = -3313.975738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.91803 -40.51668 -38.02111 -37.42726 -35.45303 -33.32783 -33.04830 -32.15875 -29.63800 -27.43352 -26.09205 -24.62920 -23.94988 -22.88528 -22.15720 -20.81288 -19.07984 -18.55911 -18.04568 -17.79848 -17.25766 -16.69703 -16.58930 -16.30071 -15.64094 -15.59010 -15.37308 -14.95079 -14.82039 -14.20140 -14.00795 -13.75251 -13.63648 -13.12439 -13.07473 -12.86718 -12.72972 -12.63802 -12.53662 -12.52247 -12.42616 -11.99054 -11.60052 -11.58590 -11.39590 -11.34569 -11.22619 -10.86320 -10.58206 -9.39904 -8.23203 -6.34725 0.92611 1.20830 1.36423 1.37022 1.48301 2.37296 2.64190 2.99004 3.09190 3.54479 3.58536 3.85161 3.95728 3.99027 4.04742 4.08059 4.21469 4.29158 4.32198 4.40598 4.49314 4.61757 4.65542 4.79384 4.79828 4.89095 4.92374 4.93088 5.09743 5.11075 5.20313 5.35949 5.46007 5.65529 5.80762 5.82972 5.86901 5.94532 6.22177 6.57343 6.81295 7.34559 8.87667 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.004271 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.305399 B = 6554.079045 C = 7523.685911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.351 6.351 4 C 0.473 3.527 5 O -0.523 6.523 6 C 0.111 3.889 7 H 0.133 0.867 8 C 0.029 3.971 9 N -0.522 5.522 10 C 0.064 3.936 11 C -0.131 4.131 12 C 0.030 3.970 13 C -0.547 4.547 14 H 0.050 0.950 15 C 0.005 3.995 16 N -0.929 5.929 17 Si 0.960 3.040 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.268 1.268 21 C 0.004 3.996 22 C 0.069 3.931 23 O -0.387 6.387 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.044 0.956 35 H -0.004 1.004 36 H -0.003 1.003 37 H 0.265 0.735 38 H 0.030 0.970 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 -7.323 19.372 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.268 6.268 4 C 0.316 3.684 5 O -0.412 6.412 6 C 0.052 3.948 7 H 0.150 0.850 8 C -0.100 4.100 9 N -0.245 5.245 10 C -0.063 4.063 11 C -0.170 4.170 12 C -0.008 4.008 13 C -0.585 4.585 14 H 0.068 0.932 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.784 3.216 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.193 1.193 21 C -0.124 4.124 22 C -0.007 4.007 23 O -0.307 6.307 24 H 0.120 0.880 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.126 0.874 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.490 -7.424 19.688 21.188 hybrid contribution 0.491 -0.761 -2.018 2.212 sum -1.999 -8.185 17.670 19.576 Atomic orbital electron populations 1.21839 0.90022 1.04538 1.03908 1.23387 0.97293 0.78658 1.02751 1.86489 1.22542 1.34309 1.83477 1.23367 0.81276 0.91799 0.71978 1.90661 1.61261 1.43741 1.45496 1.21468 0.83548 0.89037 1.00766 0.85008 1.22634 1.02045 0.90426 0.94913 1.62624 1.08911 1.15486 1.37480 1.22201 1.01787 0.96814 0.85531 1.22039 0.99704 0.99052 0.96191 1.18903 0.95068 0.94713 0.92113 1.21665 1.39309 1.04922 0.92643 0.93184 1.25898 0.95021 0.96096 1.02339 1.70067 1.43392 1.19706 1.23710 0.85532 0.78864 0.78555 0.78626 1.19729 1.20294 1.19263 1.23001 0.88428 1.02744 0.98261 1.22997 0.98772 0.82457 0.96469 1.88014 1.16782 1.31442 1.94422 0.87974 0.90646 0.91597 0.91747 0.90555 0.87368 0.95064 0.89849 0.90170 0.93849 0.93709 0.98545 0.98475 0.92626 0.95167 0.87407 0.85759 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.29 71.98 0.74 -1.09 16 2 C 0.05 0.98 6.19 71.98 0.45 1.43 16 3 O -0.35 -8.27 10.22 -51.45 -0.53 -8.80 16 4 C 0.47 13.15 7.29 71.24 0.52 13.66 16 5 O -0.52 -17.95 16.26 28.39 0.46 -17.49 16 6 C 0.11 2.76 3.33 29.88 0.10 2.86 16 7 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 8 C 0.03 0.78 4.39 86.32 0.38 1.16 16 9 N -0.52 -14.07 4.94 -895.21 -4.42 -18.49 16 10 C 0.06 2.06 5.38 86.30 0.46 2.52 16 11 C -0.13 -5.37 4.44 30.59 0.14 -5.23 16 12 C 0.03 1.56 4.97 29.85 0.15 1.71 16 13 C -0.55 -31.72 9.11 25.60 0.23 -31.48 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C 0.00 0.27 5.46 84.66 0.46 0.73 16 16 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 17 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 21 C 0.00 0.09 5.33 86.31 0.46 0.55 16 22 C 0.07 1.40 7.01 72.01 0.50 1.90 16 23 O -0.39 -10.62 10.01 -129.98 -1.30 -11.92 16 24 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.06 1.30 8.13 -2.39 -0.02 1.29 16 28 H 0.08 1.34 8.13 -2.38 -0.02 1.32 16 29 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.03 1.03 6.41 -2.39 -0.02 1.01 16 31 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.51 16 33 H 0.04 1.81 6.42 -2.39 -0.02 1.80 16 34 H 0.04 1.86 6.61 -2.39 -0.02 1.84 16 35 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.03 0.90 6.59 -2.39 -0.02 0.88 16 39 H 0.11 2.27 8.12 -2.39 -0.02 2.25 16 40 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -70.93 334.74 2.11 -68.82 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.99 Total: 8.40 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 4.59 Total: -11.28 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -4.13 Total: -74.56 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -1.36 Total: -38.20 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.93 2.11 -68.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741247996.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.364 kcal (2) G-P(sol) polarization free energy of solvation -70.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds