Wall clock time and date at job start Mon Mar 30 2020 04:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99603 * 2 1 4 4 C 1.53005 * 109.46787 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47201 * 60.97333 * 4 3 2 6 6 C 1.46894 * 111.00269 * 196.11520 * 5 4 3 7 7 C 1.50704 * 109.47202 * 160.41121 * 6 5 4 8 8 H 1.07990 * 120.00134 * 354.65900 * 7 6 5 9 9 C 1.37876 * 119.99456 * 174.66069 * 7 6 5 10 10 N 1.31508 * 120.00828 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99567 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47183 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47378 * 119.99708 * 11 9 7 14 14 H 1.48501 * 109.47283 * 239.99841 * 11 9 7 15 15 C 1.46905 * 111.00000 * 72.15808 * 5 4 3 16 16 C 1.50698 * 109.54515 * 268.35799 * 15 5 4 17 17 O 1.20764 * 120.00205 * 342.28403 * 16 15 5 18 18 C 1.53181 * 109.53987 * 148.09117 * 15 5 4 19 19 C 1.53098 * 109.15628 * 183.15632 * 18 15 5 20 20 O 1.42899 * 109.41854 * 57.61222 * 19 18 15 21 21 C 1.42908 * 114.09326 * 298.83429 * 20 19 18 22 22 C 1.53091 * 109.41268 * 61.16238 * 21 20 19 23 23 H 1.09003 * 109.46933 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47035 * 299.99881 * 1 2 3 25 25 H 1.08993 * 109.47295 * 60.00149 * 1 2 3 26 26 H 1.09001 * 109.47096 * 299.99997 * 3 2 1 27 27 H 1.08998 * 109.47244 * 60.00390 * 3 2 1 28 28 H 1.08997 * 109.47190 * 180.97081 * 4 3 2 29 29 H 1.09001 * 109.46947 * 300.97497 * 4 3 2 30 30 H 1.09005 * 109.47009 * 280.40992 * 6 5 4 31 31 H 1.09001 * 109.46825 * 40.40954 * 6 5 4 32 32 H 0.97003 * 120.00626 * 180.02562 * 10 9 7 33 33 H 1.07995 * 120.00254 * 162.28542 * 16 15 5 34 34 H 1.08994 * 109.51938 * 303.05636 * 18 15 5 35 35 H 1.08996 * 109.52493 * 63.25076 * 18 15 5 36 36 H 1.08996 * 109.48066 * 297.62012 * 19 18 15 37 37 H 1.09008 * 109.48613 * 177.59736 * 19 18 15 38 38 H 1.09001 * 109.48304 * 301.17891 * 21 20 19 39 39 H 1.08998 * 109.48855 * 181.14888 * 21 20 19 40 40 H 1.08999 * 109.52468 * 182.48418 * 22 21 20 41 41 H 1.09003 * 109.52663 * 62.29736 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9701 0.4763 -1.2119 6 6 5.3548 0.0049 -1.0779 7 6 5.6107 -1.0932 -2.0778 8 1 4.8014 -1.4688 -2.6862 9 6 6.8781 -1.6183 -2.2157 10 7 7.8638 -1.1607 -1.4752 11 14 7.1954 -2.9790 -3.4556 12 1 5.9306 -3.3130 -4.1585 13 1 8.2057 -2.5227 -4.4437 14 1 7.7019 -4.1835 -2.7500 15 6 3.8153 1.3241 -2.4017 16 6 2.4594 1.0886 -3.0156 17 8 1.8313 0.0973 -2.7305 18 6 4.9074 0.9822 -3.4200 19 6 4.7865 1.9234 -4.6214 20 8 4.8877 3.2774 -4.1762 21 6 3.8643 3.6679 -3.2584 22 6 3.9481 2.7969 -2.0022 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6885 1.8464 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 3.9788 2.1803 0.0168 29 1 3.8562 0.6286 0.8803 30 1 6.0399 0.8322 -1.2636 31 1 5.5123 -0.3779 -0.0696 32 1 8.7555 -1.5298 -1.5725 33 1 2.0493 1.8063 -3.7107 34 1 5.8871 1.1048 -2.9583 35 1 4.7863 -0.0491 -3.7515 36 1 3.8224 1.7713 -5.1067 37 1 5.5874 1.7129 -5.3303 38 1 2.8882 3.5387 -3.7258 39 1 4.0009 4.7142 -2.9850 40 1 3.1411 3.0633 -1.3197 41 1 4.9085 2.9561 -1.5118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821999086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:15 Heat of formation + Delta-G solvation = -87.923420 kcal Electronic energy + Delta-G solvation = -23371.723876 eV Core-core repulsion = 20060.751499 eV Total energy + Delta-G solvation = -3310.972377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45000 -37.79126 -37.35154 -36.17344 -32.93905 -31.67004 -30.99694 -29.17741 -26.78153 -25.84361 -24.75022 -23.15253 -22.74043 -21.89873 -20.99628 -17.90713 -16.94558 -16.28615 -15.99526 -15.80236 -15.67726 -15.33778 -14.93584 -14.60285 -14.40531 -14.14539 -14.09210 -13.14008 -12.95942 -12.57511 -12.51556 -12.28655 -11.98021 -11.81874 -11.57580 -11.24428 -11.18457 -10.88928 -10.80676 -10.67478 -10.45713 -10.32484 -10.00603 -9.59791 -9.37251 -9.16342 -9.06016 -8.73598 -8.37678 -7.14450 -6.00808 -3.97451 2.57558 3.31428 3.40241 3.45295 4.12685 4.23117 4.38184 4.52533 4.83395 5.01756 5.18529 5.23176 5.34196 5.39165 5.39773 5.44283 5.57936 5.65078 5.66239 5.70189 5.80175 5.87102 5.90195 5.93142 5.99820 6.02400 6.26812 6.32841 6.37973 6.73412 7.11600 7.16823 7.40204 7.48529 7.64807 7.85620 7.91645 8.13861 8.21306 8.53000 9.05621 9.61393 11.09150 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.008573 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.163645 B = 3265.104786 C = 4176.999605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.351 6.351 3 C 0.071 3.929 4 C 0.044 3.956 5 N -0.499 5.499 6 C 0.190 3.810 7 C -0.492 4.492 8 H 0.067 0.933 9 C 0.054 3.946 10 N -0.898 5.898 11 Si 0.890 3.110 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.061 3.939 16 C 0.334 3.666 17 O -0.413 6.413 18 C -0.139 4.139 19 C 0.052 3.948 20 O -0.384 6.384 21 C 0.063 3.937 22 C -0.177 4.177 23 H 0.079 0.921 24 H 0.027 0.973 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.004 0.996 31 H 0.026 0.974 32 H 0.260 0.740 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.039 0.961 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 10.008 -1.463 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.269 6.269 3 C -0.007 4.007 4 C -0.084 4.084 5 N -0.223 5.223 6 C 0.066 3.934 7 C -0.530 4.530 8 H 0.085 0.915 9 C -0.147 4.147 10 N -0.538 5.538 11 Si 0.718 3.282 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.031 4.031 16 C 0.185 3.815 17 O -0.279 6.279 18 C -0.176 4.176 19 C -0.025 4.025 20 O -0.303 6.303 21 C -0.014 4.014 22 C -0.216 4.216 23 H 0.098 0.902 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.021 0.979 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.057 0.943 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.552 8.921 -1.368 13.885 hybrid contribution 0.426 0.136 -0.353 0.570 sum -10.126 9.057 -1.721 13.694 Atomic orbital electron populations 1.22603 0.82935 1.02099 0.98443 1.88152 1.17652 1.26276 1.94823 1.22562 0.94696 0.85467 0.97939 1.22298 0.92644 0.97936 0.95553 1.62172 1.27302 1.34248 0.98558 1.19895 0.80989 0.94810 0.97742 1.21181 0.93971 1.17901 1.19981 0.91535 1.24920 0.96200 0.97067 0.96527 1.69948 1.00988 1.42823 1.40091 0.86558 0.78209 0.82181 0.81269 1.19635 1.21138 1.21103 1.21712 0.95915 0.90670 0.94765 1.25986 0.87419 0.86925 0.81125 1.90392 1.58204 1.27158 1.52120 1.22788 0.99672 1.01159 0.93992 1.22923 1.00870 0.81614 0.97129 1.87905 1.51164 1.28930 1.62259 1.22543 0.91072 0.98475 0.89326 1.22877 1.03370 0.96422 0.98909 0.90207 0.95455 0.94916 0.94884 0.94396 0.93212 0.90325 0.97862 0.95578 0.93050 0.91484 0.87684 0.87424 0.94270 0.88735 0.93602 0.89249 0.90852 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -6.52 9.45 -49.33 -0.47 -6.98 16 3 C 0.07 1.13 4.91 37.16 0.18 1.31 16 4 C 0.04 0.79 4.88 -3.82 -0.02 0.77 16 5 N -0.50 -10.51 3.72 -221.52 -0.82 -11.33 16 6 C 0.19 4.72 4.33 -4.98 -0.02 4.70 16 7 C -0.49 -13.19 6.12 -34.44 -0.21 -13.40 16 8 H 0.07 1.85 6.74 -52.49 -0.35 1.50 16 9 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 11 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.06 1.09 0.50 -132.57 -0.07 1.03 16 16 C 0.33 5.66 7.08 36.00 0.26 5.91 16 17 O -0.41 -8.42 15.59 -8.10 -0.13 -8.55 16 18 C -0.14 -2.67 3.28 -26.59 -0.09 -2.76 16 19 C 0.05 0.81 6.62 37.21 0.25 1.05 16 20 O -0.38 -6.01 10.77 -35.23 -0.38 -6.39 16 21 C 0.06 0.81 6.61 37.20 0.25 1.06 16 22 C -0.18 -2.58 3.48 -26.59 -0.09 -2.68 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.50 5.04 -51.93 -0.26 0.24 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.79 5.43 -51.93 -0.28 0.51 16 29 H 0.08 1.48 7.68 -51.93 -0.40 1.08 16 30 H 0.00 0.10 6.54 -51.93 -0.34 -0.24 16 31 H 0.03 0.71 7.65 -51.93 -0.40 0.31 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.07 0.91 6.35 -52.49 -0.33 0.57 16 34 H 0.10 2.37 5.60 -51.93 -0.29 2.08 16 35 H 0.11 2.34 5.64 -51.93 -0.29 2.04 16 36 H 0.04 0.54 7.21 -51.93 -0.37 0.16 16 37 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 38 H 0.05 0.50 6.56 -51.93 -0.34 0.16 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.94 5.29 -51.93 -0.27 0.67 16 41 H 0.08 1.32 7.68 -51.93 -0.40 0.92 16 LS Contribution 308.51 15.07 4.65 4.65 Total: -1.00 -31.31 308.51 -5.99 -37.31 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.01 Total: 0.05 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 1.45 Total: 0.00 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.09 Total: -36.43 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.97 Total: -21.93 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.31 -5.99 -37.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821999086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.617 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds