Wall clock time and date at job start Mon Mar 30 2020 04:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99603 * 2 1 4 4 C 1.53005 * 109.46787 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47201 * 60.97333 * 4 3 2 6 6 C 1.46894 * 111.00269 * 196.11520 * 5 4 3 7 7 C 1.50704 * 109.47202 * 160.41121 * 6 5 4 8 8 H 1.07990 * 120.00134 * 354.65900 * 7 6 5 9 9 C 1.37876 * 119.99456 * 174.66069 * 7 6 5 10 10 N 1.31508 * 120.00828 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99567 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47183 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47378 * 119.99708 * 11 9 7 14 14 H 1.48501 * 109.47283 * 239.99841 * 11 9 7 15 15 C 1.46905 * 111.00000 * 72.15808 * 5 4 3 16 16 C 1.50698 * 109.54515 * 268.35799 * 15 5 4 17 17 O 1.20764 * 120.00205 * 342.28403 * 16 15 5 18 18 C 1.53181 * 109.53987 * 148.09117 * 15 5 4 19 19 C 1.53098 * 109.15628 * 183.15632 * 18 15 5 20 20 O 1.42899 * 109.41854 * 57.61222 * 19 18 15 21 21 C 1.42908 * 114.09326 * 298.83429 * 20 19 18 22 22 C 1.53091 * 109.41268 * 61.16238 * 21 20 19 23 23 H 1.09003 * 109.46933 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47035 * 299.99881 * 1 2 3 25 25 H 1.08993 * 109.47295 * 60.00149 * 1 2 3 26 26 H 1.09001 * 109.47096 * 299.99997 * 3 2 1 27 27 H 1.08998 * 109.47244 * 60.00390 * 3 2 1 28 28 H 1.08997 * 109.47190 * 180.97081 * 4 3 2 29 29 H 1.09001 * 109.46947 * 300.97497 * 4 3 2 30 30 H 1.09005 * 109.47009 * 280.40992 * 6 5 4 31 31 H 1.09001 * 109.46825 * 40.40954 * 6 5 4 32 32 H 0.97003 * 120.00626 * 180.02562 * 10 9 7 33 33 H 1.07995 * 120.00254 * 162.28542 * 16 15 5 34 34 H 1.08994 * 109.51938 * 303.05636 * 18 15 5 35 35 H 1.08996 * 109.52493 * 63.25076 * 18 15 5 36 36 H 1.08996 * 109.48066 * 297.62012 * 19 18 15 37 37 H 1.09008 * 109.48613 * 177.59736 * 19 18 15 38 38 H 1.09001 * 109.48304 * 301.17891 * 21 20 19 39 39 H 1.08998 * 109.48855 * 181.14888 * 21 20 19 40 40 H 1.08999 * 109.52468 * 182.48418 * 22 21 20 41 41 H 1.09003 * 109.52663 * 62.29736 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9701 0.4763 -1.2119 6 6 5.3548 0.0049 -1.0779 7 6 5.6107 -1.0932 -2.0778 8 1 4.8014 -1.4688 -2.6862 9 6 6.8781 -1.6183 -2.2157 10 7 7.8638 -1.1607 -1.4752 11 14 7.1954 -2.9790 -3.4556 12 1 5.9306 -3.3130 -4.1585 13 1 8.2057 -2.5227 -4.4437 14 1 7.7019 -4.1835 -2.7500 15 6 3.8153 1.3241 -2.4017 16 6 2.4594 1.0886 -3.0156 17 8 1.8313 0.0973 -2.7305 18 6 4.9074 0.9822 -3.4200 19 6 4.7865 1.9234 -4.6214 20 8 4.8877 3.2774 -4.1762 21 6 3.8643 3.6679 -3.2584 22 6 3.9481 2.7969 -2.0022 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6885 1.8464 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 3.9788 2.1803 0.0168 29 1 3.8562 0.6286 0.8803 30 1 6.0399 0.8322 -1.2636 31 1 5.5123 -0.3779 -0.0696 32 1 8.7555 -1.5298 -1.5725 33 1 2.0493 1.8063 -3.7107 34 1 5.8871 1.1048 -2.9583 35 1 4.7863 -0.0491 -3.7515 36 1 3.8224 1.7713 -5.1067 37 1 5.5874 1.7129 -5.3303 38 1 2.8882 3.5387 -3.7258 39 1 4.0009 4.7142 -2.9850 40 1 3.1411 3.0633 -1.3197 41 1 4.9085 2.9561 -1.5118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821999086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:14 Heat of formation + Delta-G solvation = -111.014316 kcal Electronic energy + Delta-G solvation = -23372.725172 eV Core-core repulsion = 20060.751499 eV Total energy + Delta-G solvation = -3311.973673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.83793 -39.08762 -38.70220 -37.62883 -34.91668 -33.07397 -32.43933 -30.65846 -28.45330 -27.06497 -26.25125 -24.48124 -24.07566 -23.62294 -22.43062 -19.31757 -18.71616 -17.82141 -17.41244 -17.13569 -16.89424 -16.72727 -16.45554 -16.14166 -15.70863 -15.68289 -15.30988 -14.67810 -14.50367 -14.22928 -13.86630 -13.77581 -13.36120 -13.25954 -13.13971 -12.81277 -12.72476 -12.53734 -12.46041 -12.17852 -11.96308 -11.79933 -11.44261 -11.22657 -11.16177 -10.59022 -10.54359 -10.37004 -10.07973 -8.77027 -8.14022 -6.17417 1.22713 1.37214 1.40098 1.51881 2.40828 2.92344 3.06173 3.12454 3.16686 3.49567 3.80900 3.89622 4.06193 4.12399 4.25122 4.28029 4.33566 4.39905 4.53937 4.58542 4.60015 4.64039 4.67351 4.72802 4.87097 4.88764 4.94156 4.95657 5.07439 5.10325 5.23668 5.37878 5.60655 5.76752 6.12624 6.32079 6.33314 6.47627 6.62568 6.83248 6.90990 7.45063 8.95285 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.008573 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.163645 B = 3265.104786 C = 4176.999605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.394 6.394 3 C 0.076 3.924 4 C 0.040 3.960 5 N -0.519 5.519 6 C 0.212 3.788 7 C -0.489 4.489 8 H 0.053 0.947 9 C 0.005 3.995 10 N -0.932 5.932 11 Si 0.951 3.049 12 H -0.269 1.269 13 H -0.275 1.275 14 H -0.284 1.284 15 C 0.051 3.949 16 C 0.343 3.657 17 O -0.449 6.449 18 C -0.131 4.131 19 C 0.061 3.939 20 O -0.398 6.398 21 C 0.060 3.940 22 C -0.169 4.169 23 H 0.079 0.921 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.056 0.944 30 H -0.017 1.017 31 H -0.011 1.011 32 H 0.261 0.739 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.513 11.805 -2.801 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.312 6.312 3 C -0.001 4.001 4 C -0.088 4.088 5 N -0.242 5.242 6 C 0.086 3.914 7 C -0.528 4.528 8 H 0.071 0.929 9 C -0.192 4.192 10 N -0.574 5.574 11 Si 0.777 3.223 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.210 1.210 15 C -0.040 4.040 16 C 0.196 3.804 17 O -0.317 6.317 18 C -0.169 4.169 19 C -0.016 4.016 20 O -0.317 6.317 21 C -0.017 4.017 22 C -0.207 4.207 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.000 1.000 31 H 0.007 0.993 32 H 0.070 0.930 33 H 0.142 0.858 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.734 10.744 -2.712 16.880 hybrid contribution 1.065 -0.380 0.112 1.136 sum -11.669 10.364 -2.601 15.822 Atomic orbital electron populations 1.22733 0.80900 1.02694 0.99885 1.88093 1.20058 1.27890 1.95183 1.22568 0.92490 0.85071 0.99952 1.22400 0.94797 0.98177 0.93405 1.62074 1.24167 1.36893 1.01077 1.19438 0.83412 0.93649 0.94909 1.21283 0.93615 1.18092 1.19782 0.92874 1.25656 0.96039 0.99244 0.98276 1.70060 1.01352 1.44260 1.41719 0.85594 0.78170 0.79292 0.79209 1.19329 1.20044 1.21047 1.21924 0.96660 0.92323 0.93135 1.26451 0.86142 0.86988 0.80800 1.90401 1.58974 1.28953 1.53363 1.22471 0.98042 1.00565 0.95836 1.22801 1.02637 0.80970 0.95236 1.87902 1.52748 1.28178 1.62831 1.22829 0.91843 0.99255 0.87729 1.22807 1.03061 0.94279 1.00602 0.90234 0.92859 0.94408 0.93608 0.91238 0.91200 0.92587 0.99955 0.99294 0.92975 0.85829 0.92104 0.90680 0.91263 0.88537 0.90439 0.86469 0.88358 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 11.01 113.37 1.25 2.16 16 2 O -0.39 -14.18 9.45 -135.50 -1.28 -15.46 16 3 C 0.08 2.26 4.91 71.98 0.35 2.61 16 4 C 0.04 1.44 4.88 86.31 0.42 1.86 16 5 N -0.52 -22.34 3.72 -854.75 -3.18 -25.52 16 6 C 0.21 11.18 4.33 85.56 0.37 11.55 16 7 C -0.49 -27.54 6.12 25.60 0.16 -27.38 16 8 H 0.05 3.09 6.74 -2.92 -0.02 3.07 16 9 C 0.01 0.30 5.46 84.66 0.46 0.76 16 10 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 11 Si 0.95 45.08 29.54 68.60 2.03 47.11 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 15 C 0.05 1.77 0.50 2.90 0.00 1.77 16 16 C 0.34 10.62 7.08 71.24 0.50 11.12 16 17 O -0.45 -17.57 15.59 12.01 0.19 -17.38 16 18 C -0.13 -5.12 3.28 30.69 0.10 -5.02 16 19 C 0.06 1.78 6.62 72.01 0.48 2.25 16 20 O -0.40 -11.33 10.77 -148.98 -1.60 -12.94 16 21 C 0.06 1.28 6.61 72.01 0.48 1.75 16 22 C -0.17 -4.54 3.48 30.68 0.11 -4.43 16 23 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 1.23 5.04 -2.39 -0.01 1.22 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 2.17 5.43 -2.39 -0.01 2.16 16 29 H 0.06 2.21 7.68 -2.39 -0.02 2.19 16 30 H -0.02 -0.96 6.54 -2.38 -0.02 -0.97 16 31 H -0.01 -0.65 7.65 -2.39 -0.02 -0.67 16 32 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.13 2.57 6.35 -2.91 -0.02 2.55 16 34 H 0.06 2.89 5.60 -2.39 -0.01 2.88 16 35 H 0.07 3.37 5.64 -2.39 -0.01 3.36 16 36 H 0.07 1.63 7.21 -2.39 -0.02 1.61 16 37 H 0.10 2.75 8.14 -2.38 -0.02 2.74 16 38 H 0.08 1.20 6.56 -2.39 -0.02 1.19 16 39 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.10 2.15 5.29 -2.39 -0.01 2.14 16 41 H 0.06 1.85 7.68 -2.39 -0.02 1.83 16 Total: -1.00 -72.28 308.51 2.14 -70.14 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.03 Total: 10.63 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 4.68 Total: -0.98 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.90 Total: -81.11 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -2.70 Total: -45.78 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.28 2.14 -70.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821999086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.876 kcal (2) G-P(sol) polarization free energy of solvation -72.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds