Wall clock time and date at job start Mon Mar 30 2020 04:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34222 * 116.99867 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00323 * 359.72425 * 4 3 2 6 6 C 1.50706 * 120.00024 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.50475 * 54.80804 * 6 4 3 8 8 C 1.53100 * 109.50531 * 294.72479 * 6 4 3 9 9 N 1.47007 * 109.25765 * 183.21311 * 8 6 4 10 10 C 1.46904 * 111.00109 * 182.39002 * 9 8 6 11 11 H 1.08996 * 109.46854 * 60.00252 * 10 9 8 12 12 C 1.53000 * 109.47146 * 300.00543 * 10 9 8 13 13 C 1.52999 * 109.47159 * 180.02562 * 10 9 8 14 14 C 1.50701 * 109.47130 * 295.00162 * 13 10 9 15 15 H 1.08003 * 119.99964 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00070 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00157 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00203 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46941 * 90.00308 * 18 16 14 20 20 H 1.48504 * 109.47270 * 210.00123 * 18 16 14 21 21 H 1.48501 * 109.47166 * 330.00166 * 18 16 14 22 22 C 1.47012 * 110.75167 * 58.61786 * 9 8 6 23 23 C 1.53096 * 109.26060 * 301.38147 * 22 9 8 24 24 O 1.43016 * 109.50862 * 174.94284 * 6 4 3 25 25 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 27 27 H 1.08997 * 109.47571 * 60.00140 * 1 2 3 28 28 H 1.09009 * 109.46963 * 240.00402 * 2 1 3 29 29 H 1.09001 * 109.47306 * 120.00307 * 2 1 3 30 30 H 1.09000 * 109.50304 * 303.15024 * 8 6 4 31 31 H 1.08998 * 109.50660 * 63.27497 * 8 6 4 32 32 H 1.09009 * 109.46841 * 299.99263 * 12 10 9 33 33 H 1.09000 * 109.47459 * 59.99540 * 12 10 9 34 34 H 1.08997 * 109.46863 * 179.97438 * 12 10 9 35 35 H 1.09000 * 109.47144 * 55.00055 * 13 10 9 36 36 H 1.09001 * 109.46796 * 175.00556 * 13 10 9 37 37 H 0.97002 * 120.00409 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.50871 * 61.31920 * 22 9 8 39 39 H 1.08999 * 109.50869 * 181.45143 * 22 9 8 40 40 H 1.08992 * 109.51577 * 176.78482 * 23 22 9 41 41 H 1.09005 * 109.50640 * 296.91621 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 0.0040 6 6 3.9207 2.9374 0.0000 7 1 3.5131 3.4996 0.8402 8 6 3.5577 3.6413 -1.3102 9 7 4.1863 4.9699 -1.3372 10 6 3.8162 5.7028 -2.5554 11 1 2.7340 5.8275 -2.5897 12 6 4.2782 4.9165 -3.7838 13 6 4.4885 7.0772 -2.5477 14 6 3.9421 7.8973 -1.4075 15 1 3.1909 7.4798 -0.7535 16 6 4.4020 9.1802 -1.1987 17 7 5.3171 9.6884 -1.9948 18 14 3.7243 10.1970 0.2142 19 1 4.5492 9.9697 1.4278 20 1 3.7635 11.6365 -0.1485 21 1 2.3214 9.7931 0.4864 22 6 5.6469 4.8578 -1.2131 23 6 5.9890 4.1417 0.0961 24 8 5.3442 2.8654 0.1181 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9183 3.0508 -2.1525 31 1 2.4752 3.7493 -1.3776 32 1 5.3606 4.7919 -3.7495 33 1 3.7997 3.9371 -3.7895 34 1 4.0032 5.4601 -4.6877 35 1 5.5645 6.9547 -2.4242 36 1 4.2864 7.5857 -3.4904 37 1 5.6405 10.5911 -1.8481 38 1 6.0408 4.2869 -2.0539 39 1 6.0894 5.8539 -1.2095 40 1 7.0682 4.0055 0.1654 41 1 5.6422 4.7393 0.9392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839494826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:12 Heat of formation + Delta-G solvation = -125.765395 kcal Electronic energy + Delta-G solvation = -21930.511240 eV Core-core repulsion = 18617.897912 eV Total energy + Delta-G solvation = -3312.613328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73229 -39.28161 -36.87711 -36.20504 -32.92261 -32.25163 -31.17235 -30.77674 -27.54428 -26.74737 -24.57940 -23.42171 -22.99848 -21.77347 -20.55717 -18.91799 -17.75126 -16.90436 -16.70651 -16.25602 -15.79724 -15.59139 -14.94130 -14.57645 -14.38295 -14.20581 -13.82551 -13.54526 -13.22851 -13.01140 -12.57572 -12.24972 -12.14299 -11.87592 -11.80684 -11.70126 -11.48100 -11.21610 -10.90257 -10.78008 -10.69633 -10.60947 -10.40828 -10.09399 -10.02101 -9.57147 -9.17740 -9.05623 -8.31951 -7.69717 -5.95063 -3.94032 2.12028 2.26310 3.35698 3.42324 3.46146 3.99530 4.27223 4.51333 4.69936 4.70469 4.78751 4.90002 5.03603 5.11465 5.35343 5.41113 5.42429 5.53749 5.55163 5.60833 5.67596 5.74309 5.79207 5.86738 5.91183 5.97407 6.21395 6.28781 6.31054 6.51622 6.61669 6.85170 7.12248 7.38431 7.51985 7.71540 7.75390 7.86086 8.05375 8.49282 9.12557 9.68748 11.16587 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.004627 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.391356 B = 6050.007045 C = 6266.119113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.472 3.528 5 O -0.492 6.492 6 C 0.107 3.893 7 H 0.106 0.894 8 C 0.028 3.972 9 N -0.506 5.506 10 C 0.087 3.913 11 H 0.075 0.925 12 C -0.186 4.186 13 C 0.027 3.973 14 C -0.496 4.496 15 H 0.062 0.938 16 C 0.052 3.948 17 N -0.902 5.902 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.275 1.275 22 C 0.013 3.987 23 C 0.066 3.934 24 O -0.369 6.369 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.258 0.742 38 H 0.037 0.963 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 -15.855 2.603 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.313 3.687 5 O -0.377 6.377 6 C 0.047 3.953 7 H 0.123 0.877 8 C -0.101 4.101 9 N -0.230 5.230 10 C -0.020 4.020 11 H 0.093 0.907 12 C -0.245 4.245 13 C -0.010 4.010 14 C -0.534 4.534 15 H 0.080 0.920 16 C -0.147 4.147 17 N -0.543 5.543 18 Si 0.719 3.281 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.200 1.200 22 C -0.115 4.115 23 C -0.010 4.010 24 O -0.288 6.288 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.485 -15.919 3.000 17.103 hybrid contribution -0.047 0.263 0.004 0.267 sum -5.532 -15.656 3.004 16.875 Atomic orbital electron populations 1.21811 0.92429 1.02908 1.03804 1.23046 0.95442 0.80056 1.02624 1.86500 1.23868 1.32494 1.84169 1.23265 0.80725 0.91931 0.72731 1.90662 1.60379 1.42730 1.43954 1.21392 0.84004 0.88910 1.00980 0.87673 1.22633 1.01345 0.91740 0.94410 1.62405 1.07855 1.13023 1.39749 1.21964 1.00425 0.95498 0.84152 0.90691 1.22534 1.01345 0.99888 1.00734 1.19275 0.95806 0.88383 0.97555 1.21176 1.22212 0.97526 1.12502 0.91990 1.25004 0.95385 0.97970 0.96387 1.69959 1.30122 1.16024 1.38191 0.86625 0.79451 0.79307 0.82762 1.20875 1.21599 1.19965 1.22885 0.89696 1.02682 0.96273 1.22858 0.97194 0.82924 0.98042 1.87972 1.15953 1.30294 1.94555 0.90264 0.91324 0.91271 0.91205 0.91199 0.93909 0.88913 0.92893 0.93959 0.92227 0.96053 0.96059 0.93223 0.94526 0.87091 0.88064 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.35 -4.52 10.22 -39.24 -0.40 -4.93 16 4 C 0.47 7.11 7.29 36.01 0.26 7.37 16 5 O -0.49 -8.65 16.26 -25.46 -0.41 -9.06 16 6 C 0.11 1.63 3.33 -27.83 -0.09 1.53 16 7 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 8 C 0.03 0.43 4.46 -3.71 -0.02 0.41 16 9 N -0.51 -9.21 4.47 -226.34 -1.01 -10.22 16 10 C 0.09 1.69 2.37 -67.71 -0.16 1.53 16 11 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 12 C -0.19 -3.13 8.49 37.16 0.32 -2.81 16 13 C 0.03 0.65 4.14 -27.88 -0.12 0.53 16 14 C -0.50 -13.26 8.84 -34.44 -0.30 -13.56 16 15 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 16 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 17 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.01 0.22 4.88 -3.71 -0.02 0.20 16 23 C 0.07 1.01 7.01 37.21 0.26 1.27 16 24 O -0.37 -6.16 10.01 -55.11 -0.55 -6.71 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 29 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 30 H 0.04 0.68 6.44 -51.93 -0.33 0.34 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.05 0.90 6.54 -51.92 -0.34 0.56 16 33 H 0.04 0.64 6.46 -51.93 -0.34 0.30 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.54 6.02 -51.93 -0.31 0.23 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.04 0.63 6.52 -51.93 -0.34 0.29 16 39 H 0.11 2.18 6.00 -51.93 -0.31 1.87 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 329.57 15.07 4.97 4.97 Total: -1.00 -31.02 329.57 -7.64 -38.66 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.59 Total: -1.47 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 0.65 Total: -2.02 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.28 Total: -35.80 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -1.37 Total: -20.69 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.02 -7.64 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839494826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.107 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds