Wall clock time and date at job start Mon Mar 30 2020 04:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34222 * 116.99867 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00323 * 359.72425 * 4 3 2 6 6 C 1.50706 * 120.00024 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.50475 * 54.80804 * 6 4 3 8 8 C 1.53100 * 109.50531 * 294.72479 * 6 4 3 9 9 N 1.47007 * 109.25765 * 183.21311 * 8 6 4 10 10 C 1.46904 * 111.00109 * 182.39002 * 9 8 6 11 11 H 1.08996 * 109.46854 * 60.00252 * 10 9 8 12 12 C 1.53000 * 109.47146 * 300.00543 * 10 9 8 13 13 C 1.52999 * 109.47159 * 180.02562 * 10 9 8 14 14 C 1.50701 * 109.47130 * 295.00162 * 13 10 9 15 15 H 1.08003 * 119.99964 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00070 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00157 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00203 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46941 * 90.00308 * 18 16 14 20 20 H 1.48504 * 109.47270 * 210.00123 * 18 16 14 21 21 H 1.48501 * 109.47166 * 330.00166 * 18 16 14 22 22 C 1.47012 * 110.75167 * 58.61786 * 9 8 6 23 23 C 1.53096 * 109.26060 * 301.38147 * 22 9 8 24 24 O 1.43016 * 109.50862 * 174.94284 * 6 4 3 25 25 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 27 27 H 1.08997 * 109.47571 * 60.00140 * 1 2 3 28 28 H 1.09009 * 109.46963 * 240.00402 * 2 1 3 29 29 H 1.09001 * 109.47306 * 120.00307 * 2 1 3 30 30 H 1.09000 * 109.50304 * 303.15024 * 8 6 4 31 31 H 1.08998 * 109.50660 * 63.27497 * 8 6 4 32 32 H 1.09009 * 109.46841 * 299.99263 * 12 10 9 33 33 H 1.09000 * 109.47459 * 59.99540 * 12 10 9 34 34 H 1.08997 * 109.46863 * 179.97438 * 12 10 9 35 35 H 1.09000 * 109.47144 * 55.00055 * 13 10 9 36 36 H 1.09001 * 109.46796 * 175.00556 * 13 10 9 37 37 H 0.97002 * 120.00409 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.50871 * 61.31920 * 22 9 8 39 39 H 1.08999 * 109.50869 * 181.45143 * 22 9 8 40 40 H 1.08992 * 109.51577 * 176.78482 * 23 22 9 41 41 H 1.09005 * 109.50640 * 296.91621 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 0.0040 6 6 3.9207 2.9374 0.0000 7 1 3.5131 3.4996 0.8402 8 6 3.5577 3.6413 -1.3102 9 7 4.1863 4.9699 -1.3372 10 6 3.8162 5.7028 -2.5554 11 1 2.7340 5.8275 -2.5897 12 6 4.2782 4.9165 -3.7838 13 6 4.4885 7.0772 -2.5477 14 6 3.9421 7.8973 -1.4075 15 1 3.1909 7.4798 -0.7535 16 6 4.4020 9.1802 -1.1987 17 7 5.3171 9.6884 -1.9948 18 14 3.7243 10.1970 0.2142 19 1 4.5492 9.9697 1.4278 20 1 3.7635 11.6365 -0.1485 21 1 2.3214 9.7931 0.4864 22 6 5.6469 4.8578 -1.2131 23 6 5.9890 4.1417 0.0961 24 8 5.3442 2.8654 0.1181 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9183 3.0508 -2.1525 31 1 2.4752 3.7493 -1.3776 32 1 5.3606 4.7919 -3.7495 33 1 3.7997 3.9371 -3.7895 34 1 4.0032 5.4601 -4.6877 35 1 5.5645 6.9547 -2.4242 36 1 4.2864 7.5857 -3.4904 37 1 5.6405 10.5911 -1.8481 38 1 6.0408 4.2869 -2.0539 39 1 6.0894 5.8539 -1.2095 40 1 7.0682 4.0055 0.1654 41 1 5.6422 4.7393 0.9392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839494826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:12 Heat of formation + Delta-G solvation = -145.310355 kcal Electronic energy + Delta-G solvation = -21931.358773 eV Core-core repulsion = 18617.897912 eV Total energy + Delta-G solvation = -3313.460861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.90120 -40.56647 -38.14973 -37.48162 -34.87491 -33.31129 -32.40865 -32.11112 -29.34781 -28.05699 -25.98797 -24.76301 -24.31941 -23.01035 -21.79973 -20.38184 -18.92587 -18.31924 -18.12488 -17.75050 -17.10024 -16.84148 -16.47626 -16.16973 -15.73209 -15.47570 -14.93823 -14.80541 -14.70666 -14.00447 -13.82476 -13.62180 -13.61047 -13.19013 -13.04650 -12.96090 -12.80425 -12.62760 -12.52056 -12.38338 -12.14952 -11.95346 -11.77963 -11.56329 -11.37914 -11.07987 -11.07638 -10.72577 -10.44653 -9.12516 -8.07619 -6.12571 0.95096 1.21540 1.45834 1.46594 1.56955 2.50080 2.72772 3.05348 3.28429 3.59494 3.67566 3.90935 4.00895 4.04159 4.07083 4.16178 4.24631 4.32829 4.35275 4.46634 4.54205 4.59660 4.66453 4.80910 4.87377 4.91782 4.94111 5.03553 5.11034 5.15480 5.22640 5.37507 5.50308 5.69814 5.87645 5.91438 6.19923 6.22421 6.45205 6.60131 7.01703 7.54065 9.04157 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.004627 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.391356 B = 6050.007045 C = 6266.119113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.351 6.351 4 C 0.481 3.519 5 O -0.521 6.521 6 C 0.105 3.895 7 H 0.117 0.883 8 C 0.035 3.965 9 N -0.520 5.520 10 C 0.095 3.905 11 H 0.075 0.925 12 C -0.177 4.177 13 C 0.033 3.967 14 C -0.500 4.500 15 H 0.061 0.939 16 C -0.001 4.001 17 N -0.939 5.939 18 Si 0.953 3.047 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.266 1.266 22 C 0.017 3.983 23 C 0.072 3.928 24 O -0.381 6.381 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.004 0.996 36 H -0.006 1.006 37 H 0.258 0.742 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.083 -17.058 3.480 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.268 6.268 4 C 0.323 3.677 5 O -0.409 6.409 6 C 0.045 3.955 7 H 0.134 0.866 8 C -0.094 4.094 9 N -0.244 5.244 10 C -0.013 4.013 11 H 0.093 0.907 12 C -0.236 4.236 13 C -0.004 4.004 14 C -0.538 4.538 15 H 0.080 0.920 16 C -0.197 4.197 17 N -0.581 5.581 18 Si 0.780 3.220 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.190 1.190 22 C -0.111 4.111 23 C -0.004 4.004 24 O -0.300 6.300 25 H 0.121 0.879 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.022 0.978 36 H 0.013 0.987 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.891 -17.134 3.882 18.871 hybrid contribution 0.340 0.590 -0.284 0.738 sum -6.551 -16.544 3.598 18.154 Atomic orbital electron populations 1.21841 0.90075 1.04529 1.03872 1.23403 0.97232 0.78566 1.02883 1.86502 1.22414 1.34431 1.83476 1.23145 0.81269 0.91324 0.71960 1.90652 1.61215 1.43500 1.45547 1.21476 0.83514 0.89382 1.01093 0.86578 1.22619 1.01865 0.90166 0.94734 1.62306 1.08400 1.14653 1.39062 1.21684 0.99762 0.93691 0.86141 0.90728 1.22413 1.01172 1.00551 0.99436 1.19123 0.95101 0.90811 0.95382 1.21489 1.21695 0.97843 1.12822 0.92038 1.25795 0.95750 0.99344 0.98831 1.70085 1.31606 1.16370 1.40055 0.85616 0.79133 0.77500 0.79761 1.20311 1.21633 1.19026 1.22786 0.89262 1.01349 0.97714 1.22885 0.98476 0.82405 0.96652 1.87969 1.16796 1.30716 1.94520 0.87860 0.91168 0.91245 0.91081 0.90935 0.93835 0.87534 0.93324 0.91762 0.91945 0.97788 0.98749 0.93310 0.94287 0.89920 0.85846 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.29 71.98 0.74 -0.95 16 2 C 0.05 0.93 6.19 71.98 0.45 1.37 16 3 O -0.35 -8.32 10.22 -51.34 -0.52 -8.84 16 4 C 0.48 13.69 7.29 71.24 0.52 14.21 16 5 O -0.52 -17.71 16.26 28.36 0.46 -17.25 16 6 C 0.10 3.01 3.33 29.88 0.10 3.11 16 7 H 0.12 3.08 8.14 -2.39 -0.02 3.07 16 8 C 0.03 1.02 4.46 86.32 0.38 1.40 16 9 N -0.52 -18.42 4.47 -870.00 -3.89 -22.31 16 10 C 0.09 3.65 2.37 44.91 0.11 3.76 16 11 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 12 C -0.18 -5.75 8.49 71.98 0.61 -5.14 16 13 C 0.03 1.62 4.14 29.85 0.12 1.74 16 14 C -0.50 -26.91 8.84 25.60 0.23 -26.69 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 17 N -0.94 -55.74 13.29 21.44 0.28 -55.45 16 18 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 C 0.02 0.58 4.88 86.31 0.42 1.01 16 23 C 0.07 2.12 7.01 72.01 0.50 2.63 16 24 O -0.38 -12.15 10.01 -129.98 -1.30 -13.45 16 25 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 30 H 0.04 1.29 6.44 -2.39 -0.02 1.27 16 31 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.05 1.61 6.54 -2.38 -0.02 1.59 16 33 H 0.06 1.81 6.46 -2.39 -0.02 1.79 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 35 H 0.00 0.21 6.02 -2.39 -0.01 0.19 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.04 1.31 6.52 -2.39 -0.02 1.30 16 39 H 0.08 3.33 6.00 -2.39 -0.01 3.32 16 40 H 0.12 3.05 8.14 -2.39 -0.02 3.04 16 41 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -66.00 329.57 2.71 -63.29 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.00 Total: 11.30 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.65 Total: -3.14 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -3.60 Total: -77.76 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.36 Total: -39.55 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -66.00 2.71 -63.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839494826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.020 kcal (2) G-P(sol) polarization free energy of solvation -65.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds