Wall clock time and date at job start Mon Mar 30 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47119 * 2 1 4 4 C 1.52995 * 109.47074 * 120.00109 * 2 1 3 5 5 N 1.46907 * 109.47218 * 60.96375 * 4 2 1 6 6 C 1.46897 * 111.00302 * 73.44081 * 5 4 2 7 7 C 1.50698 * 109.47151 * 279.62300 * 6 5 4 8 8 H 1.08000 * 120.00187 * 2.94795 * 7 6 5 9 9 C 1.37878 * 120.00265 * 182.95359 * 7 6 5 10 10 N 1.31515 * 119.99332 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00293 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47241 * 59.99686 * 11 9 7 13 13 H 1.48503 * 109.47215 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47171 * 299.99936 * 11 9 7 15 15 C 1.46898 * 110.99928 * 197.39713 * 5 4 2 16 16 C 1.53007 * 109.47143 * 66.04266 * 15 5 4 17 17 H 1.09000 * 109.47027 * 304.99856 * 16 15 5 18 18 O 1.42900 * 109.46798 * 65.00165 * 16 15 5 19 19 C 1.52999 * 109.46724 * 184.99877 * 16 15 5 20 20 O 1.42900 * 112.85392 * 309.66612 * 19 16 15 21 21 C 1.53777 * 113.69096 * 80.93971 * 19 16 15 22 22 C 1.53785 * 87.08431 * 139.98695 * 21 19 16 23 23 C 1.53783 * 113.61079 * 178.47398 * 19 16 15 24 24 H 1.09005 * 109.47205 * 59.99663 * 1 2 3 25 25 H 1.09000 * 109.46907 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46817 * 299.99845 * 1 2 3 27 27 H 1.08998 * 109.46817 * 240.00155 * 2 1 3 28 28 H 1.09002 * 109.47044 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47745 * 299.99968 * 3 2 1 30 30 H 1.09003 * 109.47514 * 60.00076 * 3 2 1 31 31 H 1.09002 * 109.47434 * 300.96200 * 4 2 1 32 32 H 1.08998 * 109.47219 * 180.95941 * 4 2 1 33 33 H 1.09001 * 109.46606 * 39.61662 * 6 5 4 34 34 H 1.08995 * 109.46971 * 159.61966 * 6 5 4 35 35 H 0.97010 * 119.99414 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47282 * 306.04576 * 15 5 4 37 37 H 1.08996 * 109.47281 * 186.04148 * 15 5 4 38 38 H 0.96699 * 114.00372 * 60.00093 * 18 16 15 39 39 H 0.96702 * 114.00265 * 178.47529 * 20 19 16 40 40 H 1.09000 * 113.61336 * 254.53453 * 21 19 16 41 41 H 1.09000 * 113.61348 * 25.44245 * 21 19 16 42 42 H 1.09000 * 113.61586 * 220.02051 * 22 21 19 43 43 H 1.08999 * 113.61293 * 89.11087 * 22 21 19 44 44 H 1.09003 * 113.61383 * 334.48463 * 23 19 16 45 45 H 1.09003 * 113.61785 * 105.30087 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5695 -2.1129 1.2376 6 6 2.3019 -2.9081 0.2431 7 6 1.7235 -2.6571 -1.1256 8 1 0.9263 -1.9394 -1.2517 9 6 2.2119 -3.3436 -2.2170 10 7 3.1829 -4.2172 -2.0635 11 14 1.4944 -3.0330 -3.9135 12 1 1.6800 -1.6049 -4.2756 13 1 2.1870 -3.8906 -4.9085 14 1 0.0453 -3.3571 -3.9050 15 6 1.6737 -2.7150 2.5734 16 6 0.7059 -2.0113 3.5270 17 1 0.9014 -0.9390 3.5171 18 8 -0.6380 -2.2545 3.1066 19 6 0.9028 -2.5526 4.9444 20 8 0.8812 -3.9803 5.0012 21 6 2.0947 -1.9246 5.6857 22 6 1.2073 -1.9143 6.9417 23 6 -0.0013 -1.8808 5.9914 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6627 -0.2175 2.1391 32 1 3.1299 -0.7064 1.2579 33 1 3.3534 -2.6209 0.2514 34 1 2.2123 -3.9666 0.4869 35 1 3.5268 -4.7000 -2.8315 36 1 2.6931 -2.6042 2.9434 37 1 1.4212 -3.7737 2.5155 38 1 -0.8823 -3.1900 3.0913 39 1 1.0274 -4.3410 5.8865 40 1 2.9570 -2.5865 5.7657 41 1 2.3560 -0.9288 5.3276 42 1 1.3141 -1.0124 7.5444 43 1 1.2741 -2.8289 7.5309 44 1 -0.3131 -0.8730 5.7169 45 1 -0.8321 -2.5068 6.3172 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929691074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:28 Heat of formation + Delta-G solvation = -81.149370 kcal Electronic energy + Delta-G solvation = -22725.473659 eV Core-core repulsion = 19550.628121 eV Total energy + Delta-G solvation = -3174.845537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.20116 -37.60889 -35.73773 -34.39637 -33.48155 -32.43328 -29.28986 -26.94170 -26.35947 -25.87865 -25.46798 -23.62618 -21.47049 -20.58395 -19.84663 -18.93152 -16.93504 -16.59006 -16.32392 -15.29800 -15.08582 -14.89531 -14.36886 -14.23856 -13.93808 -13.47187 -13.25262 -13.12580 -12.71774 -12.49914 -12.26611 -12.11377 -11.68250 -11.64514 -11.23426 -11.16385 -11.10248 -11.02045 -10.90771 -10.70775 -10.58801 -10.37203 -10.12161 -10.04485 -9.84436 -9.79004 -9.55314 -9.03103 -8.96583 -8.30519 -7.09364 -5.93720 -3.92102 3.38803 3.42632 3.46110 4.05198 4.26327 4.35258 4.46842 4.58127 4.64507 4.96677 5.13337 5.31084 5.41138 5.47925 5.56323 5.64678 5.67316 5.70175 5.71473 5.79797 5.86363 5.89431 6.02665 6.11864 6.20165 6.22711 6.35749 6.37534 6.51731 6.56012 6.63128 6.79302 6.89536 7.29712 7.36240 7.38847 7.49422 7.55537 7.95716 8.07641 8.22954 8.34489 8.65076 9.15110 9.69683 11.16782 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021917 B = 0.005300 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.245152 B = 5282.048447 C = 5883.375555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C -0.144 4.144 4 C 0.075 3.925 5 N -0.524 5.524 6 C 0.193 3.807 7 C -0.500 4.500 8 H 0.078 0.922 9 C 0.052 3.948 10 N -0.902 5.902 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.032 3.968 16 C 0.140 3.860 17 H 0.104 0.896 18 O -0.543 6.543 19 C 0.080 3.920 20 O -0.535 6.535 21 C -0.168 4.168 22 C -0.149 4.149 23 C -0.157 4.157 24 H 0.031 0.969 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.110 0.890 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.018 0.982 33 H -0.011 1.011 34 H 0.025 0.975 35 H 0.259 0.741 36 H 0.023 0.977 37 H 0.078 0.922 38 H 0.375 0.625 39 H 0.373 0.627 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 5.676 15.781 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.125 4.125 3 C -0.202 4.202 4 C -0.053 4.053 5 N -0.248 5.248 6 C 0.068 3.932 7 C -0.538 4.538 8 H 0.096 0.904 9 C -0.148 4.148 10 N -0.542 5.542 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.097 4.097 16 C 0.080 3.920 17 H 0.122 0.878 18 O -0.347 6.347 19 C 0.038 3.962 20 O -0.340 6.340 21 C -0.206 4.206 22 C -0.186 4.186 23 C -0.195 4.195 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.128 0.872 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.007 0.993 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.041 0.959 37 H 0.096 0.904 38 H 0.222 0.778 39 H 0.220 0.780 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.819 6.256 14.842 16.553 hybrid contribution 0.904 -0.594 0.083 1.085 sum -2.914 5.662 14.925 16.226 Atomic orbital electron populations 1.21624 0.95351 1.02896 0.98513 1.21430 0.96308 0.93740 1.01006 1.21844 1.00260 0.97640 1.00413 1.21993 0.95873 0.90359 0.97096 1.62058 1.57639 1.01418 1.03636 1.19783 0.91000 0.92499 0.89915 1.21406 1.18949 1.22467 0.90988 0.90438 1.25010 0.95319 0.95359 0.99140 1.69964 1.27179 1.26449 1.30595 0.86650 0.79325 0.78070 0.83938 1.20270 1.21573 1.20190 1.22624 0.96433 0.99689 0.90920 1.21894 0.83604 0.98996 0.87493 0.87804 1.86508 1.27789 1.30688 1.89741 1.23181 0.95140 0.81277 0.96601 1.86537 1.94615 1.18348 1.34502 1.23654 0.97888 1.02447 0.96565 1.22909 0.96913 1.02219 0.96589 1.23549 0.97167 1.02389 0.96412 0.94942 0.90388 0.94788 0.87168 0.93569 0.93328 0.94021 0.93488 0.96411 0.99297 0.95647 0.93102 0.95879 0.90371 0.77801 0.77952 0.90693 0.89128 0.91062 0.90348 0.89056 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.40 37.16 0.31 -2.07 16 2 C -0.11 -2.06 2.40 -90.62 -0.22 -2.28 16 3 C -0.14 -2.31 9.19 37.15 0.34 -1.97 16 4 C 0.08 1.46 4.27 -3.82 -0.02 1.44 16 5 N -0.52 -11.15 3.65 -236.07 -0.86 -12.01 16 6 C 0.19 5.01 4.79 -4.98 -0.02 4.99 16 7 C -0.50 -13.72 7.24 -34.44 -0.25 -13.97 16 8 H 0.08 2.08 4.58 -52.49 -0.24 1.84 16 9 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 10 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 11 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.03 0.59 4.24 -3.82 -0.02 0.58 16 16 C 0.14 2.11 2.58 -26.73 -0.07 2.04 16 17 H 0.10 1.57 5.93 -51.93 -0.31 1.26 16 18 O -0.54 -8.85 13.11 -35.23 -0.46 -9.31 16 19 C 0.08 0.96 1.12 -89.81 -0.10 0.86 16 20 O -0.54 -6.51 12.78 -35.23 -0.45 -6.96 16 21 C -0.17 -1.73 7.37 -25.92 -0.19 -1.92 16 22 C -0.15 -1.26 7.75 -25.91 -0.20 -1.46 16 23 C -0.16 -1.60 7.28 -25.92 -0.19 -1.78 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.08 1.67 6.74 -51.93 -0.35 1.32 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.11 2.54 5.14 -51.93 -0.27 2.27 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.81 5.85 -51.93 -0.30 0.51 16 32 H 0.02 0.36 7.74 -51.93 -0.40 -0.04 16 33 H -0.01 -0.30 7.67 -51.93 -0.40 -0.70 16 34 H 0.03 0.72 7.65 -51.93 -0.40 0.32 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 37 H 0.08 1.54 7.47 -51.93 -0.39 1.15 16 38 H 0.38 5.53 9.03 45.56 0.41 5.94 16 39 H 0.37 3.06 8.32 45.56 0.38 3.44 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.93 7.99 -51.93 -0.41 0.52 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.55 7.79 -51.93 -0.40 0.15 16 44 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -30.39 347.30 -7.98 -38.37 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.44 Total: 8.25 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -0.72 Total: -14.17 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.13 Total: -38.19 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.91 Total: -16.27 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.39 -7.98 -38.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929691074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.782 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds