Wall clock time and date at job start Mon Mar 30 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47119 * 2 1 4 4 C 1.52995 * 109.47074 * 120.00109 * 2 1 3 5 5 N 1.46907 * 109.47218 * 60.96375 * 4 2 1 6 6 C 1.46897 * 111.00302 * 73.44081 * 5 4 2 7 7 C 1.50698 * 109.47151 * 279.62300 * 6 5 4 8 8 H 1.08000 * 120.00187 * 2.94795 * 7 6 5 9 9 C 1.37878 * 120.00265 * 182.95359 * 7 6 5 10 10 N 1.31515 * 119.99332 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00293 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47241 * 59.99686 * 11 9 7 13 13 H 1.48503 * 109.47215 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47171 * 299.99936 * 11 9 7 15 15 C 1.46898 * 110.99928 * 197.39713 * 5 4 2 16 16 C 1.53007 * 109.47143 * 66.04266 * 15 5 4 17 17 H 1.09000 * 109.47027 * 304.99856 * 16 15 5 18 18 O 1.42900 * 109.46798 * 65.00165 * 16 15 5 19 19 C 1.52999 * 109.46724 * 184.99877 * 16 15 5 20 20 O 1.42900 * 112.85392 * 309.66612 * 19 16 15 21 21 C 1.53777 * 113.69096 * 80.93971 * 19 16 15 22 22 C 1.53785 * 87.08431 * 139.98695 * 21 19 16 23 23 C 1.53783 * 113.61079 * 178.47398 * 19 16 15 24 24 H 1.09005 * 109.47205 * 59.99663 * 1 2 3 25 25 H 1.09000 * 109.46907 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46817 * 299.99845 * 1 2 3 27 27 H 1.08998 * 109.46817 * 240.00155 * 2 1 3 28 28 H 1.09002 * 109.47044 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47745 * 299.99968 * 3 2 1 30 30 H 1.09003 * 109.47514 * 60.00076 * 3 2 1 31 31 H 1.09002 * 109.47434 * 300.96200 * 4 2 1 32 32 H 1.08998 * 109.47219 * 180.95941 * 4 2 1 33 33 H 1.09001 * 109.46606 * 39.61662 * 6 5 4 34 34 H 1.08995 * 109.46971 * 159.61966 * 6 5 4 35 35 H 0.97010 * 119.99414 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47282 * 306.04576 * 15 5 4 37 37 H 1.08996 * 109.47281 * 186.04148 * 15 5 4 38 38 H 0.96699 * 114.00372 * 60.00093 * 18 16 15 39 39 H 0.96702 * 114.00265 * 178.47529 * 20 19 16 40 40 H 1.09000 * 113.61336 * 254.53453 * 21 19 16 41 41 H 1.09000 * 113.61348 * 25.44245 * 21 19 16 42 42 H 1.09000 * 113.61586 * 220.02051 * 22 21 19 43 43 H 1.08999 * 113.61293 * 89.11087 * 22 21 19 44 44 H 1.09003 * 113.61383 * 334.48463 * 23 19 16 45 45 H 1.09003 * 113.61785 * 105.30087 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5695 -2.1129 1.2376 6 6 2.3019 -2.9081 0.2431 7 6 1.7235 -2.6571 -1.1256 8 1 0.9263 -1.9394 -1.2517 9 6 2.2119 -3.3436 -2.2170 10 7 3.1829 -4.2172 -2.0635 11 14 1.4944 -3.0330 -3.9135 12 1 1.6800 -1.6049 -4.2756 13 1 2.1870 -3.8906 -4.9085 14 1 0.0453 -3.3571 -3.9050 15 6 1.6737 -2.7150 2.5734 16 6 0.7059 -2.0113 3.5270 17 1 0.9014 -0.9390 3.5171 18 8 -0.6380 -2.2545 3.1066 19 6 0.9028 -2.5526 4.9444 20 8 0.8812 -3.9803 5.0012 21 6 2.0947 -1.9246 5.6857 22 6 1.2073 -1.9143 6.9417 23 6 -0.0013 -1.8808 5.9914 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6627 -0.2175 2.1391 32 1 3.1299 -0.7064 1.2579 33 1 3.3534 -2.6209 0.2514 34 1 2.2123 -3.9666 0.4869 35 1 3.5268 -4.7000 -2.8315 36 1 2.6931 -2.6042 2.9434 37 1 1.4212 -3.7737 2.5155 38 1 -0.8823 -3.1900 3.0913 39 1 1.0274 -4.3410 5.8865 40 1 2.9570 -2.5865 5.7657 41 1 2.3560 -0.9288 5.3276 42 1 1.3141 -1.0124 7.5444 43 1 1.2741 -2.8289 7.5309 44 1 -0.3131 -0.8730 5.7169 45 1 -0.8321 -2.5068 6.3172 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929691074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:28 Heat of formation + Delta-G solvation = -104.343330 kcal Electronic energy + Delta-G solvation = -22726.479424 eV Core-core repulsion = 19550.628121 eV Total energy + Delta-G solvation = -3175.851303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.17199 -39.16883 -37.04803 -35.28037 -35.15023 -34.45852 -30.82074 -28.78113 -27.77942 -26.97396 -26.59408 -25.20725 -22.99458 -22.07350 -20.78164 -20.53338 -18.48690 -17.84708 -17.61120 -16.81558 -16.47909 -16.33355 -16.07060 -15.47283 -15.35527 -14.92743 -14.51617 -14.26650 -14.05104 -13.96969 -13.85452 -13.33669 -13.15121 -13.05189 -12.85790 -12.76029 -12.60514 -12.43326 -12.26087 -11.98943 -11.86979 -11.81701 -11.70110 -11.57301 -11.41893 -11.27662 -10.88546 -10.67790 -10.48537 -10.34200 -8.89157 -8.12032 -6.17659 1.42077 1.45023 1.52161 2.43892 3.08090 3.18685 3.20565 3.46032 3.53635 3.78709 3.85736 3.98460 4.05268 4.18469 4.27808 4.42904 4.53063 4.61036 4.71164 4.76962 4.78138 4.79730 4.82863 4.94934 5.01361 5.04333 5.07394 5.08470 5.14672 5.17032 5.20358 5.24789 5.33403 5.43255 5.45988 5.69581 5.84215 5.89328 6.16526 6.48282 6.67436 6.82018 6.89325 6.97097 7.48688 8.98465 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021917 B = 0.005300 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.245152 B = 5282.048447 C = 5883.375555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.076 3.924 5 N -0.526 5.526 6 C 0.210 3.790 7 C -0.503 4.503 8 H 0.084 0.916 9 C -0.003 4.003 10 N -0.941 5.941 11 Si 0.958 3.042 12 H -0.266 1.266 13 H -0.288 1.288 14 H -0.270 1.270 15 C 0.036 3.964 16 C 0.148 3.852 17 H 0.108 0.892 18 O -0.555 6.555 19 C 0.075 3.925 20 O -0.554 6.554 21 C -0.170 4.170 22 C -0.132 4.132 23 C -0.152 4.152 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.005 0.995 33 H -0.042 1.042 34 H -0.008 1.008 35 H 0.260 0.740 36 H 0.022 0.978 37 H 0.056 0.944 38 H 0.380 0.620 39 H 0.391 0.609 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.441 7.545 17.033 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.127 4.127 3 C -0.194 4.194 4 C -0.052 4.052 5 N -0.249 5.249 6 C 0.084 3.916 7 C -0.541 4.541 8 H 0.102 0.898 9 C -0.200 4.200 10 N -0.583 5.583 11 Si 0.784 3.216 12 H -0.191 1.191 13 H -0.213 1.213 14 H -0.195 1.195 15 C -0.093 4.093 16 C 0.088 3.912 17 H 0.126 0.874 18 O -0.360 6.360 19 C 0.033 3.967 20 O -0.362 6.362 21 C -0.208 4.208 22 C -0.170 4.170 23 C -0.190 4.190 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.024 0.976 33 H -0.025 1.025 34 H 0.010 0.990 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.227 0.773 39 H 0.241 0.759 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.949 8.136 16.126 18.728 hybrid contribution 1.265 -1.200 -0.254 1.762 sum -3.684 6.936 15.873 17.709 Atomic orbital electron populations 1.21504 0.94680 1.01288 0.99992 1.21357 0.96827 0.95598 0.98919 1.21758 1.00294 0.95250 1.02097 1.22062 0.95241 0.89238 0.98632 1.62020 1.56526 1.02085 1.04293 1.19425 0.89690 0.91231 0.91298 1.21726 1.18682 1.22070 0.91652 0.89822 1.25883 0.95692 0.95157 1.03264 1.70107 1.28771 1.27706 1.31686 0.85591 0.78630 0.78388 0.79019 1.19076 1.21341 1.19483 1.22657 0.97533 0.98924 0.90203 1.21844 0.82023 0.98839 0.88500 0.87408 1.86472 1.28226 1.31232 1.90076 1.23102 0.97271 0.81497 0.94823 1.86489 1.94819 1.18541 1.36321 1.23687 0.97472 1.02191 0.97418 1.22871 0.94556 1.03770 0.95767 1.23505 0.97658 1.01935 0.95860 0.93800 0.93467 0.92903 0.91219 0.93541 0.92305 0.91659 0.90586 0.97639 1.02465 0.98960 0.93142 0.96026 0.92494 0.77271 0.75892 0.90910 0.89046 0.89732 0.88614 0.89271 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 8.40 71.98 0.60 -3.64 16 2 C -0.11 -4.12 2.40 -10.80 -0.03 -4.14 16 3 C -0.14 -4.06 9.19 71.98 0.66 -3.40 16 4 C 0.08 2.94 4.27 86.30 0.37 3.31 16 5 N -0.53 -23.00 3.65 -900.79 -3.29 -26.29 16 6 C 0.21 11.48 4.79 85.56 0.41 11.89 16 7 C -0.50 -28.50 7.24 25.60 0.19 -28.31 16 8 H 0.08 4.57 4.58 -2.91 -0.01 4.55 16 9 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 10 N -0.94 -58.09 13.29 21.45 0.28 -57.80 16 11 Si 0.96 45.30 29.54 68.60 2.03 47.32 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 15 C 0.04 1.34 4.24 86.31 0.37 1.70 16 16 C 0.15 4.33 2.58 30.60 0.08 4.41 16 17 H 0.11 3.06 5.93 -2.39 -0.01 3.05 16 18 O -0.55 -17.72 13.11 -148.98 -1.95 -19.67 16 19 C 0.08 1.69 1.12 -10.27 -0.01 1.68 16 20 O -0.55 -12.95 12.78 -148.98 -1.90 -14.85 16 21 C -0.17 -3.15 7.37 31.12 0.23 -2.92 16 22 C -0.13 -1.81 7.75 31.12 0.24 -1.56 16 23 C -0.15 -2.69 7.28 31.12 0.23 -2.46 16 24 H 0.04 1.45 8.14 -2.38 -0.02 1.44 16 25 H 0.05 1.99 6.74 -2.39 -0.02 1.97 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 3.24 5.14 -2.39 -0.01 3.23 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 2.49 5.85 -2.39 -0.01 2.48 16 32 H 0.01 0.22 7.74 -2.39 -0.02 0.20 16 33 H -0.04 -2.53 7.67 -2.39 -0.02 -2.54 16 34 H -0.01 -0.47 7.65 -2.39 -0.02 -0.49 16 35 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 36 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 37 H 0.06 2.36 7.47 -2.39 -0.02 2.34 16 38 H 0.38 11.21 9.03 -74.06 -0.67 10.54 16 39 H 0.39 5.75 8.32 -74.06 -0.62 5.13 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.68 7.99 -2.39 -0.02 1.66 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 43 H 0.10 1.00 7.79 -2.39 -0.02 0.98 16 44 H 0.09 1.63 8.10 -2.39 -0.02 1.62 16 45 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -67.53 347.30 -1.35 -68.88 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.31 Total: 25.61 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 3.80 Total: -23.19 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -3.01 Total: -84.10 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -3.86 Total: -34.53 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.53 -1.35 -68.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929691074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.465 kcal (2) G-P(sol) polarization free energy of solvation -67.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds