Wall clock time and date at job start Mon Mar 30 2020 05:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99834 * 2 1 4 4 C 1.53003 * 112.84597 * 48.80529 * 3 2 1 5 5 C 1.53777 * 113.69283 * 277.53894 * 3 2 1 6 6 C 1.53776 * 87.08006 * 270.87246 * 5 3 2 7 7 H 1.08998 * 113.69343 * 89.12238 * 6 5 3 8 8 N 1.46901 * 113.61681 * 220.01888 * 6 5 3 9 9 C 1.46902 * 111.00056 * 290.88015 * 8 6 5 10 10 C 1.46901 * 111.00416 * 166.91906 * 8 6 5 11 11 C 1.52995 * 109.47397 * 196.70174 * 10 8 6 12 12 H 1.09002 * 109.47223 * 53.46422 * 11 10 8 13 13 O 1.42906 * 109.47053 * 293.46711 * 11 10 8 14 14 C 1.50698 * 109.47096 * 173.46351 * 11 10 8 15 15 H 1.07996 * 120.00109 * 0.02562 * 14 11 10 16 16 C 1.37885 * 119.99904 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99713 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 119.99813 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47292 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47391 * 120.00100 * 18 16 14 21 21 H 1.48499 * 109.47026 * 239.99935 * 18 16 14 22 22 C 1.53778 * 113.61390 * 179.97438 * 3 2 1 23 23 C 1.52994 * 113.61778 * 334.65896 * 22 3 2 24 24 C 1.53003 * 113.69298 * 203.75805 * 22 3 2 25 25 H 1.09000 * 109.47146 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46722 * 299.99840 * 1 2 3 27 27 H 1.08997 * 109.47198 * 59.99670 * 1 2 3 28 28 H 1.09005 * 109.46714 * 191.19356 * 4 3 2 29 29 H 1.08994 * 109.47562 * 311.19307 * 4 3 2 30 30 H 1.09002 * 109.46956 * 71.19855 * 4 3 2 31 31 H 1.08997 * 113.61247 * 156.32331 * 5 3 2 32 32 H 1.09000 * 113.61347 * 25.42379 * 5 3 2 33 33 H 1.09001 * 109.47298 * 52.54522 * 9 8 6 34 34 H 1.08997 * 109.47101 * 172.54920 * 9 8 6 35 35 H 1.09001 * 109.46862 * 292.54615 * 9 8 6 36 36 H 1.08997 * 109.47135 * 316.70567 * 10 8 6 37 37 H 1.09003 * 109.46922 * 76.70272 * 10 8 6 38 38 H 0.96693 * 113.99789 * 299.99606 * 13 11 10 39 39 H 0.97005 * 119.99506 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.47187 * 157.49228 * 23 22 3 41 41 H 1.09005 * 109.46931 * 277.49344 * 23 22 3 42 42 H 1.09002 * 109.47243 * 37.49121 * 23 22 3 43 43 H 1.08999 * 109.47075 * 316.05027 * 24 22 3 44 44 H 1.09001 * 109.46816 * 76.04804 * 24 22 3 45 45 H 1.08995 * 109.47129 * 196.04659 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4035 2.2259 1.0610 5 6 2.0928 1.9452 -1.3960 6 6 3.4694 1.2744 -1.5357 7 1 3.4266 0.2701 -1.9570 8 7 4.4747 2.1242 -2.1878 9 6 4.1593 2.3161 -3.6097 10 6 5.8239 1.5685 -2.0182 11 6 6.8628 2.6485 -2.3267 12 1 6.6558 3.5340 -1.7258 13 8 6.7993 2.9883 -3.7133 14 6 8.2392 2.1296 -1.9991 15 1 8.3609 1.1295 -1.6102 16 6 9.3433 2.9319 -2.1959 17 7 9.1951 4.1496 -2.6700 18 14 11.0494 2.2884 -1.7906 19 1 10.9454 0.8993 -1.2764 20 1 11.8876 2.3016 -3.0163 21 1 11.6717 3.1533 -0.7561 22 6 3.5480 1.2952 0.0006 23 6 4.1522 0.0243 0.6011 24 6 4.1712 2.5735 0.5651 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.7356 3.2494 0.8870 29 1 0.3160 2.1818 1.0014 30 1 1.7266 1.9023 2.0504 31 1 2.1377 3.0340 -1.3753 32 1 1.3485 1.5644 -2.0954 33 1 3.1331 2.6698 -3.7097 34 1 4.8405 3.0520 -4.0368 35 1 4.2702 1.3689 -4.1375 36 1 5.9495 1.2265 -0.9909 37 1 5.9594 0.7288 -2.6998 38 1 6.9737 2.2464 -4.3084 39 1 9.9718 4.7141 -2.8081 40 1 5.1669 -0.1080 0.2257 41 1 4.1751 0.1111 1.6874 42 1 3.5450 -0.8355 0.3180 43 1 3.6456 3.4409 0.1658 44 1 4.0897 2.5680 1.6521 45 1 5.2219 2.6221 0.2797 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929757937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:30 Heat of formation + Delta-G solvation = -68.564331 kcal Electronic energy + Delta-G solvation = -22981.562466 eV Core-core repulsion = 19807.262657 eV Total energy + Delta-G solvation = -3174.299809 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69072 -37.29590 -35.82738 -33.77120 -32.06209 -30.69464 -29.45054 -28.22474 -27.28487 -26.46486 -25.50840 -23.89899 -21.91706 -20.97716 -19.97919 -18.28512 -16.90657 -15.84782 -15.65340 -15.41963 -15.09632 -14.64944 -14.45712 -14.37161 -13.89607 -13.44720 -13.07553 -12.81347 -12.70632 -12.62611 -12.33056 -12.12074 -11.93063 -11.83787 -11.56518 -11.43037 -11.28069 -10.98975 -10.96613 -10.81399 -10.78302 -10.53693 -10.35434 -10.09710 -9.78892 -9.71685 -9.30109 -8.93224 -8.53044 -8.06940 -7.49243 -5.96694 -4.14388 3.28807 3.37266 3.40592 3.62831 4.38347 4.53880 4.61606 4.68182 4.91168 5.09828 5.24935 5.28064 5.30346 5.41003 5.47531 5.52190 5.56478 5.66664 5.80080 5.87926 5.93575 6.01236 6.04327 6.06655 6.09194 6.16439 6.25077 6.28563 6.35465 6.39832 6.50169 6.60868 6.71081 6.80568 6.85177 7.10242 7.29009 7.62898 7.81707 7.85377 8.03486 8.27249 8.89603 9.43138 9.62897 11.07282 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.029949 B = 0.004804 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.713306 B = 5827.044681 C = 6202.888639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.091 3.909 4 C -0.165 4.165 5 C -0.146 4.146 6 C 0.067 3.933 7 H 0.057 0.943 8 N -0.519 5.519 9 C 0.019 3.981 10 C 0.031 3.969 11 C 0.238 3.762 12 H 0.063 0.937 13 O -0.561 6.561 14 C -0.571 4.571 15 H 0.054 0.946 16 C 0.081 3.919 17 N -0.858 5.858 18 Si 0.886 3.114 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.051 4.051 23 C -0.136 4.136 24 C -0.115 4.115 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.008 0.992 36 H 0.071 0.929 37 H 0.017 0.983 38 H 0.340 0.660 39 H 0.259 0.741 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.051 -5.520 5.070 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.280 6.280 3 C 0.051 3.949 4 C -0.223 4.223 5 C -0.184 4.184 6 C -0.042 4.042 7 H 0.075 0.925 8 N -0.243 5.243 9 C -0.129 4.129 10 C -0.097 4.097 11 C 0.180 3.820 12 H 0.081 0.919 13 O -0.363 6.363 14 C -0.609 4.609 15 H 0.072 0.928 16 C -0.125 4.125 17 N -0.494 5.494 18 Si 0.714 3.286 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.052 4.052 23 C -0.194 4.194 24 C -0.172 4.172 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.027 0.973 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.183 0.817 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.004 -4.457 5.498 17.499 hybrid contribution 0.855 -1.634 -0.419 1.891 sum -15.149 -6.090 5.079 17.099 Atomic orbital electron populations 1.22723 0.81940 1.02188 1.00012 1.87912 1.18964 1.26348 1.94738 1.22507 0.94617 0.83193 0.94589 1.22199 1.00504 1.00335 0.99219 1.23559 0.97043 1.01261 0.96530 1.23094 0.92171 0.94843 0.94091 0.92524 1.62289 1.01957 1.46680 1.13375 1.22641 1.01210 1.00703 0.88373 1.23122 0.88230 0.97862 1.00456 1.19371 0.89711 0.92730 0.80160 0.91913 1.86543 1.92762 1.38868 1.18121 1.21686 0.92266 1.00641 1.46353 0.92792 1.25010 0.98948 0.94586 0.93996 1.70096 1.29672 1.07380 1.42232 0.86662 0.84769 0.79126 0.78087 1.19769 1.20976 1.20900 1.21951 0.91091 0.97037 0.95079 1.21685 1.00696 0.96866 1.00103 1.21497 1.02492 0.94780 0.98471 0.90018 0.93804 0.94239 0.90718 0.92541 0.91917 0.88534 0.92010 0.93543 0.87907 0.97306 0.91056 0.96455 0.81693 0.93140 0.92291 0.92979 0.91951 0.92089 0.93575 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.35 101.05 1.05 1.31 16 2 O -0.36 -4.71 9.12 -35.23 -0.32 -5.03 16 3 C 0.09 1.17 1.08 -89.81 -0.10 1.07 16 4 C -0.17 -1.78 8.06 37.16 0.30 -1.49 16 5 C -0.15 -1.98 5.96 -25.92 -0.15 -2.13 16 6 C 0.07 1.06 2.56 -66.87 -0.17 0.89 16 7 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 8 N -0.52 -9.44 3.87 -233.87 -0.91 -10.34 16 9 C 0.02 0.33 9.03 60.07 0.54 0.87 16 10 C 0.03 0.63 3.97 -3.83 -0.02 0.62 16 11 C 0.24 5.95 3.02 -27.89 -0.08 5.86 16 12 H 0.06 1.76 8.14 -51.93 -0.42 1.34 16 13 O -0.56 -14.03 9.77 -35.23 -0.34 -14.37 16 14 C -0.57 -15.57 8.76 -34.44 -0.30 -15.88 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 17 N -0.86 -25.28 12.84 55.43 0.71 -24.57 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.05 -0.75 0.66 -153.67 -0.10 -0.85 16 23 C -0.14 -1.98 8.95 37.15 0.33 -1.65 16 24 C -0.12 -1.73 7.11 37.16 0.26 -1.47 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.37 6.36 -51.93 -0.33 0.04 16 27 H 0.04 0.36 7.90 -51.93 -0.41 -0.05 16 28 H 0.07 0.79 6.70 -51.93 -0.35 0.45 16 29 H 0.06 0.53 6.18 -51.93 -0.32 0.21 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.33 7.43 -51.93 -0.39 0.94 16 32 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 33 H 0.05 0.72 7.42 -51.93 -0.39 0.34 16 34 H 0.10 2.02 5.57 -51.93 -0.29 1.73 16 35 H 0.01 0.14 8.04 -51.93 -0.42 -0.27 16 36 H 0.07 1.47 4.78 -51.93 -0.25 1.22 16 37 H 0.02 0.36 7.97 -51.93 -0.41 -0.05 16 38 H 0.34 7.71 9.04 45.56 0.41 8.13 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.06 0.92 6.68 -51.93 -0.35 0.57 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.90 6.96 -51.93 -0.36 0.54 16 43 H 0.06 0.90 6.44 -51.93 -0.33 0.57 16 44 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 45 H 0.08 1.39 6.40 -51.93 -0.33 1.06 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -29.56 337.95 -6.32 -35.88 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.00 Total: 7.87 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 1.46 Total: -10.68 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.19 Total: -34.92 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.67 Total: -19.40 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.56 -6.32 -35.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929757937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.684 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds