Wall clock time and date at job start Mon Mar 30 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99834 * 2 1 4 4 C 1.53003 * 112.84597 * 48.80529 * 3 2 1 5 5 C 1.53777 * 113.69283 * 277.53894 * 3 2 1 6 6 C 1.53776 * 87.08006 * 270.87246 * 5 3 2 7 7 H 1.08998 * 113.69343 * 89.12238 * 6 5 3 8 8 N 1.46901 * 113.61681 * 220.01888 * 6 5 3 9 9 C 1.46902 * 111.00056 * 290.88015 * 8 6 5 10 10 C 1.46901 * 111.00416 * 166.91906 * 8 6 5 11 11 C 1.52995 * 109.47397 * 196.70174 * 10 8 6 12 12 H 1.09002 * 109.47223 * 53.46422 * 11 10 8 13 13 O 1.42906 * 109.47053 * 293.46711 * 11 10 8 14 14 C 1.50698 * 109.47096 * 173.46351 * 11 10 8 15 15 H 1.07996 * 120.00109 * 0.02562 * 14 11 10 16 16 C 1.37885 * 119.99904 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99713 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 119.99813 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47292 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47391 * 120.00100 * 18 16 14 21 21 H 1.48499 * 109.47026 * 239.99935 * 18 16 14 22 22 C 1.53778 * 113.61390 * 179.97438 * 3 2 1 23 23 C 1.52994 * 113.61778 * 334.65896 * 22 3 2 24 24 C 1.53003 * 113.69298 * 203.75805 * 22 3 2 25 25 H 1.09000 * 109.47146 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46722 * 299.99840 * 1 2 3 27 27 H 1.08997 * 109.47198 * 59.99670 * 1 2 3 28 28 H 1.09005 * 109.46714 * 191.19356 * 4 3 2 29 29 H 1.08994 * 109.47562 * 311.19307 * 4 3 2 30 30 H 1.09002 * 109.46956 * 71.19855 * 4 3 2 31 31 H 1.08997 * 113.61247 * 156.32331 * 5 3 2 32 32 H 1.09000 * 113.61347 * 25.42379 * 5 3 2 33 33 H 1.09001 * 109.47298 * 52.54522 * 9 8 6 34 34 H 1.08997 * 109.47101 * 172.54920 * 9 8 6 35 35 H 1.09001 * 109.46862 * 292.54615 * 9 8 6 36 36 H 1.08997 * 109.47135 * 316.70567 * 10 8 6 37 37 H 1.09003 * 109.46922 * 76.70272 * 10 8 6 38 38 H 0.96693 * 113.99789 * 299.99606 * 13 11 10 39 39 H 0.97005 * 119.99506 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.47187 * 157.49228 * 23 22 3 41 41 H 1.09005 * 109.46931 * 277.49344 * 23 22 3 42 42 H 1.09002 * 109.47243 * 37.49121 * 23 22 3 43 43 H 1.08999 * 109.47075 * 316.05027 * 24 22 3 44 44 H 1.09001 * 109.46816 * 76.04804 * 24 22 3 45 45 H 1.08995 * 109.47129 * 196.04659 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4035 2.2259 1.0610 5 6 2.0928 1.9452 -1.3960 6 6 3.4694 1.2744 -1.5357 7 1 3.4266 0.2701 -1.9570 8 7 4.4747 2.1242 -2.1878 9 6 4.1593 2.3161 -3.6097 10 6 5.8239 1.5685 -2.0182 11 6 6.8628 2.6485 -2.3267 12 1 6.6558 3.5340 -1.7258 13 8 6.7993 2.9883 -3.7133 14 6 8.2392 2.1296 -1.9991 15 1 8.3609 1.1295 -1.6102 16 6 9.3433 2.9319 -2.1959 17 7 9.1951 4.1496 -2.6700 18 14 11.0494 2.2884 -1.7906 19 1 10.9454 0.8993 -1.2764 20 1 11.8876 2.3016 -3.0163 21 1 11.6717 3.1533 -0.7561 22 6 3.5480 1.2952 0.0006 23 6 4.1522 0.0243 0.6011 24 6 4.1712 2.5735 0.5651 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.7356 3.2494 0.8870 29 1 0.3160 2.1818 1.0014 30 1 1.7266 1.9023 2.0504 31 1 2.1377 3.0340 -1.3753 32 1 1.3485 1.5644 -2.0954 33 1 3.1331 2.6698 -3.7097 34 1 4.8405 3.0520 -4.0368 35 1 4.2702 1.3689 -4.1375 36 1 5.9495 1.2265 -0.9909 37 1 5.9594 0.7288 -2.6998 38 1 6.9737 2.2464 -4.3084 39 1 9.9718 4.7141 -2.8081 40 1 5.1669 -0.1080 0.2257 41 1 4.1751 0.1111 1.6874 42 1 3.5450 -0.8355 0.3180 43 1 3.6456 3.4409 0.1658 44 1 4.0897 2.5680 1.6521 45 1 5.2219 2.6221 0.2797 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929757937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:29 Heat of formation + Delta-G solvation = -89.113493 kcal Electronic energy + Delta-G solvation = -22982.453545 eV Core-core repulsion = 19807.262657 eV Total energy + Delta-G solvation = -3175.190888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82248 -38.75442 -37.27023 -35.31880 -34.18583 -31.90335 -30.68991 -29.80971 -28.31025 -27.42196 -27.25955 -25.51811 -23.04207 -22.59209 -21.52092 -19.39981 -18.92264 -17.04801 -16.74127 -16.62637 -16.55936 -16.49667 -16.09219 -15.63133 -15.36766 -14.92425 -14.42752 -14.15317 -13.92899 -13.90957 -13.58464 -13.52345 -13.26070 -12.98183 -12.96991 -12.84981 -12.67729 -12.65399 -12.50364 -12.34975 -12.04188 -12.01275 -11.87473 -11.67257 -11.10011 -11.01071 -10.74367 -10.67633 -10.30219 -9.93893 -9.04838 -8.10482 -6.35812 1.39886 1.41636 1.53278 2.40051 2.70493 3.15185 3.19265 3.48167 3.58404 3.74669 4.05474 4.25890 4.27722 4.34293 4.43994 4.48851 4.55048 4.56517 4.60039 4.64994 4.75066 4.78778 4.81715 4.83114 4.83906 4.95896 5.00301 5.03671 5.06348 5.15417 5.19136 5.23703 5.34177 5.39582 5.56258 5.63968 5.68709 5.80164 6.06728 6.33572 6.37614 6.44900 6.77422 7.36222 7.57638 8.93675 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.029949 B = 0.004804 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.713306 B = 5827.044681 C = 6202.888639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.381 6.381 3 C 0.104 3.896 4 C -0.163 4.163 5 C -0.137 4.137 6 C 0.059 3.941 7 H 0.047 0.953 8 N -0.525 5.525 9 C 0.024 3.976 10 C 0.052 3.948 11 C 0.244 3.756 12 H 0.025 0.975 13 O -0.570 6.570 14 C -0.585 4.585 15 H 0.054 0.946 16 C 0.030 3.970 17 N -0.897 5.897 18 Si 0.956 3.044 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.058 4.058 23 C -0.131 4.131 24 C -0.108 4.108 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.012 0.988 36 H 0.069 0.931 37 H 0.013 0.987 38 H 0.349 0.651 39 H 0.260 0.740 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.383 -6.416 5.919 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.300 6.300 3 C 0.063 3.937 4 C -0.220 4.220 5 C -0.175 4.175 6 C -0.049 4.049 7 H 0.064 0.936 8 N -0.248 5.248 9 C -0.124 4.124 10 C -0.076 4.076 11 C 0.186 3.814 12 H 0.043 0.957 13 O -0.374 6.374 14 C -0.624 4.624 15 H 0.072 0.928 16 C -0.173 4.173 17 N -0.534 5.534 18 Si 0.781 3.219 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.204 1.204 22 C -0.058 4.058 23 C -0.189 4.189 24 C -0.165 4.165 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.031 0.969 36 H 0.088 0.912 37 H 0.031 0.969 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.354 -5.368 6.348 19.243 hybrid contribution 1.197 -1.371 -0.700 1.949 sum -16.157 -6.739 5.648 18.395 Atomic orbital electron populations 1.22943 0.80033 1.03537 1.00945 1.87883 1.21024 1.26237 1.94848 1.22312 0.93080 0.83673 0.94586 1.22185 1.01629 0.99719 0.98487 1.23515 0.95380 1.01110 0.97518 1.23193 0.92831 0.94195 0.94703 0.93561 1.62216 1.01292 1.47240 1.14048 1.22533 1.01781 1.00211 0.87860 1.22684 0.88902 0.95941 1.00050 1.19125 0.90391 0.92182 0.79698 0.95746 1.86502 1.92920 1.39656 1.18283 1.22048 0.93605 1.00664 1.46055 0.92755 1.25825 1.03016 0.94679 0.93755 1.70226 1.30877 1.08712 1.43595 0.85571 0.79707 0.78731 0.77918 1.18974 1.20512 1.20424 1.21985 0.93144 0.96692 0.94016 1.21627 0.99564 0.96897 1.00778 1.21392 1.00274 0.95144 0.99688 0.88617 0.92430 0.93664 0.90597 0.90660 0.91552 0.88529 0.90997 0.91332 0.90296 0.96927 0.91227 0.96885 0.80651 0.93060 0.94065 0.91803 0.91949 0.92054 0.91710 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.35 113.37 1.17 1.51 16 2 O -0.38 -8.99 9.12 -148.98 -1.36 -10.35 16 3 C 0.10 2.43 1.08 -10.27 -0.01 2.42 16 4 C -0.16 -3.04 8.06 71.98 0.58 -2.46 16 5 C -0.14 -3.46 5.96 31.12 0.19 -3.27 16 6 C 0.06 1.84 2.56 45.46 0.12 1.95 16 7 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 8 N -0.52 -19.18 3.87 -893.83 -3.46 -22.64 16 9 C 0.02 0.83 9.03 127.69 1.15 1.99 16 10 C 0.05 2.22 3.97 86.30 0.34 2.56 16 11 C 0.24 12.59 3.02 29.85 0.09 12.68 16 12 H 0.02 1.45 8.14 -2.39 -0.02 1.43 16 13 O -0.57 -29.35 9.77 -148.98 -1.46 -30.81 16 14 C -0.59 -32.51 8.76 25.60 0.22 -32.29 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 16 C 0.03 1.68 5.40 84.66 0.46 2.13 16 17 N -0.90 -53.87 12.84 21.45 0.28 -53.59 16 18 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 C -0.06 -1.63 0.66 -51.64 -0.03 -1.67 16 23 C -0.13 -3.72 8.95 71.98 0.64 -3.08 16 24 C -0.11 -3.19 7.11 71.98 0.51 -2.68 16 25 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 0.77 6.36 -2.38 -0.02 0.75 16 27 H 0.04 0.68 7.90 -2.39 -0.02 0.66 16 28 H 0.08 1.41 6.70 -2.38 -0.02 1.39 16 29 H 0.07 1.13 6.18 -2.39 -0.01 1.11 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 2.46 7.43 -2.39 -0.02 2.44 16 32 H 0.07 1.67 7.93 -2.39 -0.02 1.65 16 33 H 0.07 2.05 7.42 -2.39 -0.02 2.03 16 34 H 0.08 3.15 5.57 -2.39 -0.01 3.13 16 35 H 0.01 0.41 8.04 -2.39 -0.02 0.39 16 36 H 0.07 2.96 4.78 -2.39 -0.01 2.95 16 37 H 0.01 0.56 7.97 -2.39 -0.02 0.54 16 38 H 0.35 16.23 9.04 -74.06 -0.67 15.56 16 39 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 40 H 0.04 1.28 6.68 -2.39 -0.02 1.27 16 41 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.06 1.75 6.96 -2.39 -0.02 1.73 16 43 H 0.06 1.78 6.44 -2.39 -0.02 1.76 16 44 H 0.06 1.63 8.08 -2.39 -0.02 1.62 16 45 H 0.04 1.61 6.40 -2.39 -0.02 1.59 16 Total: -1.00 -63.68 337.95 1.76 -61.92 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.30 Total: 29.91 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 5.43 Total: -20.20 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -3.19 Total: -76.23 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -2.81 Total: -41.16 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -63.68 1.76 -61.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929757937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.191 kcal (2) G-P(sol) polarization free energy of solvation -63.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds