Wall clock time and date at job start Mon Mar 30 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99594 * 2 1 4 4 C 1.53004 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47024 * 54.92736 * 4 3 2 6 6 C 1.53001 * 109.47159 * 174.92994 * 4 3 2 7 7 N 1.46900 * 109.47090 * 294.43981 * 6 4 3 8 8 C 1.48555 * 111.00107 * 284.36511 * 7 6 4 9 9 C 1.54383 * 104.59357 * 200.96114 * 8 7 6 10 10 C 1.54252 * 105.06011 * 23.84974 * 9 8 7 11 11 O 1.42906 * 110.32621 * 119.00124 * 10 9 8 12 12 C 1.50703 * 110.32774 * 241.10305 * 10 9 8 13 13 H 1.08000 * 119.99847 * 118.54538 * 12 10 9 14 14 C 1.37881 * 120.00050 * 298.55276 * 12 10 9 15 15 N 1.31519 * 119.99809 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00041 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47063 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46738 * 119.99541 * 16 14 12 19 19 H 1.48500 * 109.47032 * 239.99651 * 16 14 12 20 20 C 1.48557 * 111.00094 * 168.94277 * 7 6 4 21 21 C 1.52999 * 109.47095 * 294.93082 * 4 3 2 22 22 C 1.52998 * 109.47002 * 174.37801 * 21 4 3 23 23 C 1.52996 * 109.47360 * 294.37634 * 21 4 3 24 24 H 1.09010 * 109.47154 * 300.00012 * 1 2 3 25 25 H 1.09002 * 109.47210 * 60.00001 * 1 2 3 26 26 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47313 * 60.00208 * 3 2 1 28 28 H 1.09003 * 109.47071 * 299.99426 * 3 2 1 29 29 H 1.08998 * 109.46709 * 174.44278 * 6 4 3 30 30 H 1.08999 * 109.46770 * 54.44291 * 6 4 3 31 31 H 1.08999 * 110.41278 * 82.18274 * 8 7 6 32 32 H 1.09001 * 110.41054 * 319.73408 * 8 7 6 33 33 H 1.09003 * 110.32348 * 264.95483 * 9 8 7 34 34 H 1.08996 * 110.41193 * 142.79354 * 9 8 7 35 35 H 0.96699 * 113.99879 * 62.82257 * 11 10 9 36 36 H 0.97000 * 119.99687 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.41148 * 40.26059 * 20 7 6 38 38 H 1.08998 * 110.41550 * 277.82455 * 20 7 6 39 39 H 1.08998 * 109.46784 * 54.38156 * 21 4 3 40 40 H 1.09001 * 109.47526 * 65.51363 * 22 21 4 41 41 H 1.08999 * 109.47168 * 185.51792 * 22 21 4 42 42 H 1.09007 * 109.47094 * 305.51619 * 22 21 4 43 43 H 1.09006 * 109.46704 * 63.72894 * 23 21 4 44 44 H 1.08994 * 109.47055 * 183.72680 * 23 21 4 45 45 H 1.08996 * 109.47110 * 303.73326 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5672 -0.8402 6 6 4.1573 2.5768 -0.1268 7 7 3.8245 3.1433 -1.4407 8 6 4.6419 2.5186 -2.5124 9 6 4.5973 3.5318 -3.6763 10 6 4.2930 4.8909 -3.0132 11 8 5.3588 5.8114 -3.2559 12 6 2.9929 5.4479 -3.5336 13 1 2.1701 5.6215 -2.8559 14 6 2.8540 5.7356 -4.8748 15 7 3.8561 5.5244 -5.7000 16 14 1.2423 6.4254 -5.5200 17 1 0.2810 6.5698 -4.3974 18 1 1.4845 7.7539 -6.1376 19 1 0.6805 5.5013 -6.5377 20 6 4.1793 4.5845 -1.5044 21 6 3.9953 0.5386 1.3090 22 6 5.5038 0.2896 1.2522 23 6 3.6762 1.4719 2.4786 24 1 -0.3634 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8901 29 1 5.2401 2.5014 -0.0274 30 1 3.7645 3.2234 0.6578 31 1 4.2047 1.5682 -2.8187 32 1 5.6676 2.3745 -2.1730 33 1 3.8064 3.2675 -4.3783 34 1 5.5596 3.5668 -4.1870 35 1 5.4910 6.0225 -4.1902 36 1 3.7584 5.7272 -6.6435 37 1 5.1326 4.7637 -1.0072 38 1 3.3939 5.1898 -1.0517 39 1 3.4756 -0.4094 1.4483 40 1 6.0284 1.2442 1.2113 41 1 5.8154 -0.2584 2.1414 42 1 5.7424 -0.2945 0.3633 43 1 2.5963 1.5965 2.5597 44 1 4.0628 1.0419 3.4025 45 1 4.1420 2.4422 2.3066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930819349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:26 Heat of formation + Delta-G solvation = -107.078473 kcal Electronic energy + Delta-G solvation = -22583.732754 eV Core-core repulsion = 19407.762847 eV Total energy + Delta-G solvation = -3175.969908 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.13634 -37.77956 -36.31566 -34.45067 -32.06650 -30.77470 -28.88244 -27.93097 -27.15336 -26.46403 -24.85700 -23.73817 -22.63608 -20.43878 -19.47409 -18.46401 -17.00002 -16.28848 -16.03340 -15.60063 -14.90879 -14.81412 -14.48893 -14.22402 -13.97587 -13.61742 -13.32744 -13.20580 -12.59420 -12.40497 -12.09558 -11.98037 -11.80531 -11.78682 -11.43889 -11.29713 -11.15856 -11.13028 -10.87954 -10.57039 -10.44390 -10.38057 -10.33521 -10.18946 -10.05544 -9.84584 -9.38453 -8.98484 -8.54534 -8.08645 -7.77013 -6.13967 -4.19389 3.25843 3.34281 3.39152 3.94430 4.37057 4.51810 4.89750 4.99410 5.06374 5.16126 5.34308 5.40287 5.42974 5.50082 5.62484 5.67157 5.70084 5.72174 5.74815 5.84550 5.89605 5.98921 6.00530 6.02629 6.07852 6.15798 6.20155 6.25419 6.37487 6.42005 6.48556 6.51605 6.58173 6.91109 7.11145 7.26713 7.36458 7.60498 7.71267 7.75821 7.89290 8.24917 8.83347 9.45641 9.54572 10.93487 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.005366 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.373412 B = 5217.199581 C = 6080.146099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.068 3.932 4 C -0.070 4.070 5 H 0.077 0.923 6 C 0.047 3.953 7 N -0.501 5.501 8 C 0.033 3.967 9 C -0.120 4.120 10 C 0.248 3.752 11 O -0.596 6.596 12 C -0.516 4.516 13 H 0.062 0.938 14 C 0.065 3.935 15 N -0.900 5.900 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.053 3.947 21 C -0.089 4.089 22 C -0.148 4.148 23 C -0.151 4.151 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.382 0.618 36 H 0.264 0.736 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 -9.450 11.469 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.008 4.008 4 C -0.089 4.089 5 H 0.096 0.904 6 C -0.082 4.082 7 N -0.225 5.225 8 C -0.095 4.095 9 C -0.159 4.159 10 C 0.209 3.791 11 O -0.405 6.405 12 C -0.555 4.555 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.541 5.541 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.074 4.074 21 C -0.108 4.108 22 C -0.206 4.206 23 C -0.208 4.208 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.233 0.767 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.455 -9.705 11.864 15.396 hybrid contribution -0.278 0.678 -0.957 1.205 sum -1.733 -9.027 10.907 14.264 Atomic orbital electron populations 1.22661 0.81679 1.02016 0.99937 1.87804 1.19135 1.29087 1.95495 1.22617 0.93314 0.83721 1.01133 1.21088 0.93496 0.96550 0.97770 0.90436 1.22360 0.97929 0.94899 0.92987 1.65286 1.51483 1.03546 1.02207 1.23162 0.93948 0.98656 0.93718 1.22836 1.00872 0.96175 0.95996 1.19262 0.85974 0.85615 0.88298 1.86079 1.55418 1.66686 1.32284 1.21682 0.98568 1.41928 0.93289 0.92007 1.25010 0.96890 0.94926 0.96784 1.69709 1.31195 1.48987 1.04233 0.86437 0.83571 0.78580 0.78793 1.19732 1.21026 1.21004 1.22962 0.97981 0.87920 0.98562 1.21086 0.95959 0.99292 0.94477 1.21893 0.95858 1.01503 1.01299 1.21946 1.01424 0.99799 0.97604 0.94579 0.93983 0.90244 0.93812 0.91173 0.94212 0.91033 0.91675 0.95418 0.90732 0.93187 0.76737 0.92560 0.95238 0.90681 0.90542 0.92618 0.93092 0.92750 0.92710 0.93140 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.40 -5.70 10.15 -35.23 -0.36 -6.06 16 3 C 0.07 0.99 5.14 37.16 0.19 1.18 16 4 C -0.07 -0.98 1.92 -90.62 -0.17 -1.16 16 5 H 0.08 1.19 7.32 -51.93 -0.38 0.81 16 6 C 0.05 0.72 3.40 -3.82 -0.01 0.71 16 7 N -0.50 -9.61 4.73 -229.98 -1.09 -10.70 16 8 C 0.03 0.65 5.94 -2.18 -0.01 0.64 16 9 C -0.12 -2.82 5.56 -25.35 -0.14 -2.96 16 10 C 0.25 6.21 1.06 -90.40 -0.10 6.11 16 11 O -0.60 -15.64 12.95 -35.23 -0.46 -16.10 16 12 C -0.52 -13.96 8.10 -34.44 -0.28 -14.23 16 13 H 0.06 1.69 7.53 -52.49 -0.40 1.29 16 14 C 0.06 1.73 5.02 -17.82 -0.09 1.64 16 15 N -0.90 -24.30 10.80 55.43 0.60 -23.70 16 16 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.05 1.16 5.73 -2.19 -0.01 1.15 16 21 C -0.09 -1.06 2.65 -90.62 -0.24 -1.30 16 22 C -0.15 -1.63 8.83 37.16 0.33 -1.30 16 23 C -0.15 -1.63 8.49 37.16 0.32 -1.31 16 24 H 0.04 0.37 8.14 -51.92 -0.42 -0.06 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.59 6.44 -51.93 -0.33 0.26 16 28 H 0.07 1.17 7.64 -51.93 -0.40 0.78 16 29 H 0.04 0.61 6.06 -51.93 -0.31 0.29 16 30 H 0.07 1.06 6.52 -51.93 -0.34 0.72 16 31 H 0.06 1.21 7.75 -51.93 -0.40 0.81 16 32 H 0.03 0.52 7.74 -51.93 -0.40 0.12 16 33 H 0.07 1.91 7.24 -51.93 -0.38 1.54 16 34 H 0.05 1.18 7.98 -51.93 -0.41 0.77 16 35 H 0.38 10.17 7.30 45.56 0.33 10.50 16 36 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.03 0.63 7.94 -51.93 -0.41 0.22 16 38 H 0.07 1.64 7.67 -51.93 -0.40 1.24 16 39 H 0.08 0.95 7.68 -51.93 -0.40 0.55 16 40 H 0.05 0.63 6.74 -51.93 -0.35 0.28 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.05 0.59 6.66 -51.93 -0.35 0.25 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.64 6.25 -51.93 -0.32 0.32 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -27.68 341.94 -7.60 -35.29 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.32 Total: 9.48 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 0.89 Total: -9.33 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: -0.49 Total: -34.40 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.81 Total: -22.16 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.68 -7.60 -35.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.792 kcal (2) G-P(sol) polarization free energy of solvation -27.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds