Wall clock time and date at job start Mon Mar 30 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99594 * 2 1 4 4 C 1.53004 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47024 * 54.92736 * 4 3 2 6 6 C 1.53001 * 109.47159 * 174.92994 * 4 3 2 7 7 N 1.46900 * 109.47090 * 294.43981 * 6 4 3 8 8 C 1.48555 * 111.00107 * 284.36511 * 7 6 4 9 9 C 1.54383 * 104.59357 * 200.96114 * 8 7 6 10 10 C 1.54252 * 105.06011 * 23.84974 * 9 8 7 11 11 O 1.42906 * 110.32621 * 119.00124 * 10 9 8 12 12 C 1.50703 * 110.32774 * 241.10305 * 10 9 8 13 13 H 1.08000 * 119.99847 * 118.54538 * 12 10 9 14 14 C 1.37881 * 120.00050 * 298.55276 * 12 10 9 15 15 N 1.31519 * 119.99809 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00041 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47063 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46738 * 119.99541 * 16 14 12 19 19 H 1.48500 * 109.47032 * 239.99651 * 16 14 12 20 20 C 1.48557 * 111.00094 * 168.94277 * 7 6 4 21 21 C 1.52999 * 109.47095 * 294.93082 * 4 3 2 22 22 C 1.52998 * 109.47002 * 174.37801 * 21 4 3 23 23 C 1.52996 * 109.47360 * 294.37634 * 21 4 3 24 24 H 1.09010 * 109.47154 * 300.00012 * 1 2 3 25 25 H 1.09002 * 109.47210 * 60.00001 * 1 2 3 26 26 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47313 * 60.00208 * 3 2 1 28 28 H 1.09003 * 109.47071 * 299.99426 * 3 2 1 29 29 H 1.08998 * 109.46709 * 174.44278 * 6 4 3 30 30 H 1.08999 * 109.46770 * 54.44291 * 6 4 3 31 31 H 1.08999 * 110.41278 * 82.18274 * 8 7 6 32 32 H 1.09001 * 110.41054 * 319.73408 * 8 7 6 33 33 H 1.09003 * 110.32348 * 264.95483 * 9 8 7 34 34 H 1.08996 * 110.41193 * 142.79354 * 9 8 7 35 35 H 0.96699 * 113.99879 * 62.82257 * 11 10 9 36 36 H 0.97000 * 119.99687 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.41148 * 40.26059 * 20 7 6 38 38 H 1.08998 * 110.41550 * 277.82455 * 20 7 6 39 39 H 1.08998 * 109.46784 * 54.38156 * 21 4 3 40 40 H 1.09001 * 109.47526 * 65.51363 * 22 21 4 41 41 H 1.08999 * 109.47168 * 185.51792 * 22 21 4 42 42 H 1.09007 * 109.47094 * 305.51619 * 22 21 4 43 43 H 1.09006 * 109.46704 * 63.72894 * 23 21 4 44 44 H 1.08994 * 109.47055 * 183.72680 * 23 21 4 45 45 H 1.08996 * 109.47110 * 303.73326 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5672 -0.8402 6 6 4.1573 2.5768 -0.1268 7 7 3.8245 3.1433 -1.4407 8 6 4.6419 2.5186 -2.5124 9 6 4.5973 3.5318 -3.6763 10 6 4.2930 4.8909 -3.0132 11 8 5.3588 5.8114 -3.2559 12 6 2.9929 5.4479 -3.5336 13 1 2.1701 5.6215 -2.8559 14 6 2.8540 5.7356 -4.8748 15 7 3.8561 5.5244 -5.7000 16 14 1.2423 6.4254 -5.5200 17 1 0.2810 6.5698 -4.3974 18 1 1.4845 7.7539 -6.1376 19 1 0.6805 5.5013 -6.5377 20 6 4.1793 4.5845 -1.5044 21 6 3.9953 0.5386 1.3090 22 6 5.5038 0.2896 1.2522 23 6 3.6762 1.4719 2.4786 24 1 -0.3634 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8901 29 1 5.2401 2.5014 -0.0274 30 1 3.7645 3.2234 0.6578 31 1 4.2047 1.5682 -2.8187 32 1 5.6676 2.3745 -2.1730 33 1 3.8064 3.2675 -4.3783 34 1 5.5596 3.5668 -4.1870 35 1 5.4910 6.0225 -4.1902 36 1 3.7584 5.7272 -6.6435 37 1 5.1326 4.7637 -1.0072 38 1 3.3939 5.1898 -1.0517 39 1 3.4756 -0.4094 1.4483 40 1 6.0284 1.2442 1.2113 41 1 5.8154 -0.2584 2.1414 42 1 5.7424 -0.2945 0.3633 43 1 2.5963 1.5965 2.5597 44 1 4.0628 1.0419 3.4025 45 1 4.1420 2.4422 2.3066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930819349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:25 Heat of formation + Delta-G solvation = -126.116513 kcal Electronic energy + Delta-G solvation = -22584.558306 eV Core-core repulsion = 19407.762847 eV Total energy + Delta-G solvation = -3176.795459 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52289 -39.20362 -37.52431 -36.11568 -34.14296 -32.15896 -30.28378 -29.68135 -28.05957 -27.66419 -26.47255 -25.21170 -23.77198 -22.00278 -21.32455 -19.62076 -19.02883 -17.46272 -17.32334 -16.85182 -16.72265 -16.09889 -16.00264 -15.83808 -15.25706 -15.00521 -14.66277 -14.29560 -14.08843 -13.89860 -13.58530 -13.43859 -13.15531 -13.01268 -12.87912 -12.80657 -12.61676 -12.42035 -12.28992 -12.24553 -12.13307 -11.93144 -11.83369 -11.41745 -11.32506 -11.19509 -10.88174 -10.59252 -10.46422 -10.10882 -9.29586 -8.18354 -6.30872 1.39350 1.42535 1.53232 2.41043 2.90662 2.96832 3.16942 3.85376 3.91406 4.00114 4.04497 4.19764 4.33889 4.37605 4.41493 4.46000 4.51117 4.56281 4.59164 4.65239 4.71082 4.76751 4.81186 4.84506 4.86509 4.87594 5.01131 5.06952 5.09193 5.13154 5.22526 5.29099 5.33838 5.38996 5.51852 5.55831 5.67118 5.79282 6.00219 6.18950 6.29182 6.32380 6.74310 7.37402 7.45332 8.87692 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.005366 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.373412 B = 5217.199581 C = 6080.146099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.073 3.927 4 C -0.065 4.065 5 H 0.064 0.936 6 C 0.050 3.950 7 N -0.506 5.506 8 C 0.044 3.956 9 C -0.112 4.112 10 C 0.231 3.769 11 O -0.603 6.603 12 C -0.538 4.538 13 H 0.051 0.949 14 C 0.025 3.975 15 N -0.916 5.916 16 Si 0.957 3.043 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.062 3.938 21 C -0.083 4.083 22 C -0.147 4.147 23 C -0.149 4.149 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.376 0.624 36 H 0.267 0.733 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 -10.285 12.906 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.003 4.003 4 C -0.084 4.084 5 H 0.082 0.918 6 C -0.077 4.077 7 N -0.231 5.231 8 C -0.084 4.084 9 C -0.151 4.151 10 C 0.191 3.809 11 O -0.411 6.411 12 C -0.576 4.576 13 H 0.070 0.930 14 C -0.175 4.175 15 N -0.557 5.557 16 Si 0.783 3.217 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.066 4.066 21 C -0.101 4.101 22 C -0.204 4.204 23 C -0.206 4.206 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.226 0.774 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.848 -10.550 13.314 17.087 hybrid contribution -0.176 0.916 -1.404 1.686 sum -2.024 -9.633 11.910 15.451 Atomic orbital electron populations 1.22859 0.80185 1.03536 1.00304 1.87779 1.20831 1.28815 1.95542 1.22504 0.93656 0.83843 1.00301 1.21032 0.93190 0.95441 0.98712 0.91801 1.22426 0.98646 0.95655 0.91019 1.65262 1.51673 1.02134 1.04012 1.23041 0.95058 0.97837 0.92466 1.22621 0.99051 0.96752 0.96680 1.19535 0.84973 0.85770 0.90574 1.86073 1.55914 1.67293 1.31821 1.21882 0.99247 1.42838 0.93683 0.93034 1.25667 0.99744 0.95107 0.96937 1.69787 1.32439 1.49072 1.04403 0.85530 0.80109 0.77999 0.78081 1.19668 1.20517 1.20622 1.22789 0.98040 0.89553 0.96198 1.21022 0.96533 0.99119 0.93473 1.21880 0.95005 1.01559 1.01950 1.21930 1.01426 0.99466 0.97757 0.93229 0.94585 0.88227 0.92710 0.93906 0.93386 0.90047 0.90590 0.93932 0.93624 0.94193 0.77400 0.92370 0.94759 0.91159 0.90775 0.92828 0.91478 0.93161 0.92835 0.91584 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -11.26 10.15 -148.98 -1.51 -12.77 16 3 C 0.07 2.05 5.14 71.98 0.37 2.42 16 4 C -0.06 -1.72 1.92 -10.79 -0.02 -1.74 16 5 H 0.06 1.88 7.32 -2.38 -0.02 1.86 16 6 C 0.05 1.47 3.40 86.30 0.29 1.77 16 7 N -0.51 -19.06 4.73 -881.52 -4.17 -23.22 16 8 C 0.04 1.69 5.94 86.45 0.51 2.21 16 9 C -0.11 -5.34 5.56 31.49 0.17 -5.16 16 10 C 0.23 11.68 1.06 -10.65 -0.01 11.67 16 11 O -0.60 -32.07 12.95 -148.98 -1.93 -34.00 16 12 C -0.54 -29.51 8.10 25.60 0.21 -29.30 16 13 H 0.05 2.86 7.53 -2.91 -0.02 2.84 16 14 C 0.02 1.34 5.02 84.65 0.42 1.76 16 15 N -0.92 -50.03 10.80 21.45 0.23 -49.80 16 16 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 C 0.06 2.68 5.73 86.45 0.50 3.18 16 21 C -0.08 -1.77 2.65 -10.80 -0.03 -1.80 16 22 C -0.15 -2.85 8.83 71.98 0.64 -2.22 16 23 C -0.15 -2.81 8.49 71.98 0.61 -2.20 16 24 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.39 6.44 -2.39 -0.02 1.38 16 28 H 0.04 1.42 7.64 -2.39 -0.02 1.40 16 29 H 0.05 1.35 6.06 -2.39 -0.01 1.34 16 30 H 0.08 2.24 6.52 -2.39 -0.02 2.23 16 31 H 0.08 2.77 7.75 -2.39 -0.02 2.75 16 32 H 0.04 1.52 7.74 -2.39 -0.02 1.51 16 33 H 0.04 2.39 7.24 -2.39 -0.02 2.38 16 34 H 0.04 1.92 7.98 -2.39 -0.02 1.90 16 35 H 0.38 20.49 7.30 -74.06 -0.54 19.95 16 36 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 37 H 0.03 1.43 7.94 -2.39 -0.02 1.41 16 38 H 0.07 3.07 7.67 -2.39 -0.02 3.05 16 39 H 0.07 1.66 7.68 -2.39 -0.02 1.65 16 40 H 0.05 1.06 6.74 -2.39 -0.02 1.05 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.05 1.02 6.66 -2.38 -0.02 1.01 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 1.09 6.25 -2.39 -0.01 1.07 16 Total: -1.00 -58.66 341.94 -0.02 -58.68 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.41 Total: 33.46 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 4.91 Total: -17.59 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -3.93 Total: -73.02 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -3.44 Total: -46.78 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -58.66 -0.02 -58.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.440 kcal (2) G-P(sol) polarization free energy of solvation -58.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds