Wall clock time and date at job start Mon Mar 30 2020 06:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 S 1.65598 * 120.00095 * 180.02562 * 9 7 2 11 11 O 1.42101 * 106.40398 * 178.53845 * 10 9 7 12 12 O 1.42098 * 106.40011 * 311.46286 * 10 9 7 13 13 C 1.76204 * 107.21832 * 65.00007 * 10 9 7 14 14 C 1.38260 * 119.99942 * 269.72766 * 13 10 9 15 15 C 1.38211 * 120.00095 * 179.78526 * 14 13 10 16 16 C 1.38261 * 119.99739 * 0.46497 * 15 14 13 17 17 C 1.38212 * 120.00015 * 359.76747 * 16 15 14 18 18 N 1.48022 * 120.00155 * 179.97438 * 17 16 15 19 19 O 1.21798 * 120.00306 * 180.02562 * 18 17 16 20 20 O 1.21802 * 119.99561 * 0.02562 * 18 17 16 21 21 C 1.38216 * 119.99996 * 90.00138 * 13 10 9 22 22 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 23 23 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 24 24 H 1.07995 * 119.99691 * 0.02562 * 14 13 10 25 25 H 1.08000 * 120.00165 * 180.25468 * 15 14 13 26 26 H 1.07999 * 120.00233 * 179.78330 * 16 15 14 27 27 H 1.08000 * 120.00074 * 359.97438 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 16 2.1534 -3.8223 0.0047 11 8 1.1740 -4.8510 0.0455 12 8 3.1318 -3.7207 -1.0208 13 6 3.0360 -3.9150 1.5269 14 6 4.3223 -3.4150 1.6118 15 6 5.0130 -3.4838 2.8069 16 6 4.4212 -4.0611 3.9151 17 6 3.1372 -4.5652 3.8290 18 7 2.5039 -5.1839 5.0152 19 8 1.3725 -5.6286 4.9392 20 8 3.1142 -5.2483 6.0674 21 6 2.4446 -4.4926 2.6346 22 1 -0.4849 0.8401 0.0004 23 1 0.3555 -2.3880 0.0092 24 1 4.7858 -2.9673 0.7452 25 1 6.0162 -3.0895 2.8743 26 1 4.9622 -4.1180 4.8481 27 1 1.4414 -4.8868 2.5673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037714362.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:34 Heat of formation + Delta-G solvation = -51.168752 kcal Electronic energy + Delta-G solvation = -18540.395307 eV Core-core repulsion = 15200.844408 eV Total energy + Delta-G solvation = -3339.550898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06770 -39.16310 -36.47164 -36.26356 -34.94109 -34.88427 -31.96953 -31.44075 -31.26271 -26.47185 -24.82763 -23.36790 -22.41382 -19.75066 -18.60729 -18.46958 -18.22739 -17.44123 -16.71340 -16.68686 -15.76227 -15.53304 -14.79457 -14.44050 -14.23213 -13.63513 -13.23015 -12.44905 -12.22172 -12.12026 -11.53321 -11.47434 -11.32658 -11.19559 -11.13111 -11.06280 -11.05048 -10.81930 -10.61034 -10.28530 -10.21526 -9.67468 -9.46795 -8.58043 -6.80927 -4.17506 -0.06460 0.72384 1.27108 1.43489 1.51923 3.00975 3.05366 3.06412 3.18559 3.80936 4.19131 4.40163 4.52926 4.58193 4.82697 4.87789 4.93512 5.08255 5.40066 5.53425 5.72653 5.90273 6.04174 6.23946 6.56920 6.70931 7.15320 7.74781 8.34180 8.44767 8.89591 10.32809 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.019207 B = 0.006635 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.433681 B = 4218.938734 C = 4573.829527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.033 3.967 3 Si 0.928 3.072 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.108 0.892 9 N -0.931 5.931 10 S 2.575 3.425 11 O -0.997 6.997 12 O -0.965 6.965 13 C -0.656 4.656 14 C 0.024 3.976 15 C -0.141 4.141 16 C -0.028 4.028 17 C -0.071 4.071 18 N 0.033 4.967 19 O -0.159 6.159 20 O -0.171 6.171 21 C 0.037 3.963 22 H 0.282 0.718 23 H 0.412 0.588 24 H 0.155 0.845 25 H 0.149 0.851 26 H 0.152 0.848 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.626 -1.763 4.558 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.178 4.178 3 Si 0.753 3.247 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.407 4.407 8 H 0.126 0.874 9 N -0.681 5.681 10 S 2.665 3.335 11 O -0.985 6.985 12 O -0.955 6.955 13 C -0.732 4.732 14 C 0.005 3.995 15 C -0.160 4.160 16 C -0.048 4.048 17 C -0.155 4.155 18 N 0.551 4.449 19 O -0.376 6.376 20 O -0.385 6.385 21 C 0.017 3.983 22 H 0.092 0.908 23 H 0.248 0.752 24 H 0.173 0.827 25 H 0.167 0.833 26 H 0.169 0.831 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.055 -2.240 3.437 9.039 hybrid contribution 0.019 0.913 1.287 1.578 sum 8.074 -1.327 4.724 9.448 Atomic orbital electron populations 1.69682 1.06246 1.29362 1.44236 1.25428 0.95770 1.00049 0.96581 0.85961 0.79204 0.80093 0.79467 1.19082 1.20336 1.19497 1.19469 0.92513 0.83049 1.45688 0.87448 1.52232 1.17358 1.19712 1.78786 1.09012 0.73270 0.74307 0.76919 1.93423 1.59361 1.58032 1.87692 1.93468 1.61302 1.86958 1.53745 1.32824 1.07992 1.07595 1.24770 1.21464 0.91507 0.88400 0.98135 1.21360 1.01415 1.01145 0.92079 1.21146 0.91477 0.91641 1.00519 1.21269 0.96916 1.10268 0.87002 1.43621 1.00623 0.98423 1.02190 1.94557 1.03497 1.48539 1.91004 1.94489 1.64492 1.62014 1.17529 1.20781 0.99944 0.89187 0.88351 0.90796 0.75164 0.82695 0.83318 0.83074 0.82049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.70 13.06 55.49 0.72 -19.98 15 2 C 0.03 0.75 5.50 -17.43 -0.10 0.65 15 3 Si 0.93 17.60 29.55 -169.99 -5.02 12.57 15 4 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 15 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 7 C -0.26 -5.91 9.63 -15.06 -0.15 -6.06 15 8 H 0.11 2.21 7.82 -52.49 -0.41 1.80 15 9 N -0.93 -20.41 5.75 31.50 0.18 -20.23 15 10 S 2.58 52.35 5.70 -107.50 -0.61 51.73 15 11 O -1.00 -22.20 17.28 -57.17 -0.99 -23.19 15 12 O -0.96 -21.25 16.98 -57.17 -0.97 -22.22 15 13 C -0.66 -11.50 5.89 -39.58 -0.23 -11.74 15 14 C 0.02 0.36 9.52 -39.58 -0.38 -0.02 15 15 C -0.14 -1.71 10.05 -39.58 -0.40 -2.11 15 16 C -0.03 -0.38 9.56 -39.58 -0.38 -0.75 15 17 C -0.07 -1.15 6.85 -79.95 -0.55 -1.70 15 18 N 0.03 0.57 4.45 33.96 0.15 0.72 15 19 O -0.16 -2.90 18.45 -29.46 -0.54 -3.44 15 20 O -0.17 -2.85 18.45 -29.46 -0.54 -3.40 15 21 C 0.04 0.65 9.03 -39.58 -0.36 0.30 15 22 H 0.28 6.41 8.31 -40.82 -0.34 6.07 15 23 H 0.41 9.25 8.02 -34.47 -0.28 8.98 15 24 H 0.16 2.07 7.61 -52.49 -0.40 1.68 15 25 H 0.15 1.22 8.06 -52.49 -0.42 0.80 15 26 H 0.15 1.60 7.61 -52.49 -0.40 1.20 15 27 H 0.16 2.81 7.17 -52.49 -0.38 2.43 15 LS Contribution 271.63 15.07 4.09 4.09 Total: -1.00 -28.38 271.63 -7.48 -35.87 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -1.42 Total: 8.89 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -2.53 Total: -21.43 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 1.06 Total: -39.48 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -3.05 Total: -52.25 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.02 Total: 12.57 kcal Atomic # 16 Polarization: 52.35 SS G_CDS: -0.61 Total: 51.73 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.38 -7.48 -35.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714362.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.302 kcal (2) G-P(sol) polarization free energy of solvation -28.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds