Wall clock time and date at job start Mon Mar 30 2020 06:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 S 1.65598 * 120.00095 * 180.02562 * 9 7 2 11 11 O 1.42101 * 106.40398 * 178.53845 * 10 9 7 12 12 O 1.42098 * 106.40011 * 311.46286 * 10 9 7 13 13 C 1.76204 * 107.21832 * 65.00007 * 10 9 7 14 14 C 1.38260 * 119.99942 * 269.72766 * 13 10 9 15 15 C 1.38211 * 120.00095 * 179.78526 * 14 13 10 16 16 C 1.38261 * 119.99739 * 0.46497 * 15 14 13 17 17 C 1.38212 * 120.00015 * 359.76747 * 16 15 14 18 18 N 1.48022 * 120.00155 * 179.97438 * 17 16 15 19 19 O 1.21798 * 120.00306 * 180.02562 * 18 17 16 20 20 O 1.21802 * 119.99561 * 0.02562 * 18 17 16 21 21 C 1.38216 * 119.99996 * 90.00138 * 13 10 9 22 22 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 23 23 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 24 24 H 1.07995 * 119.99691 * 0.02562 * 14 13 10 25 25 H 1.08000 * 120.00165 * 180.25468 * 15 14 13 26 26 H 1.07999 * 120.00233 * 179.78330 * 16 15 14 27 27 H 1.08000 * 120.00074 * 359.97438 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 16 2.1534 -3.8223 0.0047 11 8 1.1740 -4.8510 0.0455 12 8 3.1318 -3.7207 -1.0208 13 6 3.0360 -3.9150 1.5269 14 6 4.3223 -3.4150 1.6118 15 6 5.0130 -3.4838 2.8069 16 6 4.4212 -4.0611 3.9151 17 6 3.1372 -4.5652 3.8290 18 7 2.5039 -5.1839 5.0152 19 8 1.3725 -5.6286 4.9392 20 8 3.1142 -5.2483 6.0674 21 6 2.4446 -4.4926 2.6346 22 1 -0.4849 0.8401 0.0004 23 1 0.3555 -2.3880 0.0092 24 1 4.7858 -2.9673 0.7452 25 1 6.0162 -3.0895 2.8743 26 1 4.9622 -4.1180 4.8481 27 1 1.4414 -4.8868 2.5673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037714362.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:33 Heat of formation + Delta-G solvation = -70.946416 kcal Electronic energy + Delta-G solvation = -18541.252931 eV Core-core repulsion = 15200.844408 eV Total energy + Delta-G solvation = -3340.408522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.39103 -40.41646 -38.15293 -37.80232 -36.77779 -36.54428 -33.24976 -32.91527 -32.66920 -27.78298 -26.48394 -24.69262 -23.69072 -21.16961 -20.14217 -19.99394 -19.78636 -18.77259 -18.40461 -17.97510 -17.24003 -16.97710 -16.36215 -16.00667 -15.40842 -15.21887 -14.50179 -13.87228 -13.65243 -13.46737 -13.15070 -13.04928 -13.00776 -12.89907 -12.82435 -12.42092 -12.40950 -12.39308 -12.18431 -11.89522 -11.76820 -10.99563 -10.64686 -10.23449 -8.37964 -5.92887 -1.34621 -0.61381 -0.35241 0.16251 0.22095 1.50086 1.54306 1.60146 1.93818 2.26335 2.58733 2.85038 3.14064 3.24400 3.35056 3.59026 3.72333 3.79696 4.08564 4.33472 4.48232 4.73675 4.78589 5.01562 5.04252 5.34821 5.54341 6.39058 6.66146 6.89915 7.24291 8.79345 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.019207 B = 0.006635 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.433681 B = 4218.938734 C = 4573.829527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.016 4.016 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.964 5.964 10 S 2.654 3.346 11 O -1.012 7.012 12 O -0.978 6.978 13 C -0.674 4.674 14 C 0.023 3.977 15 C -0.116 4.116 16 C -0.008 4.008 17 C -0.084 4.084 18 N 0.032 4.968 19 O -0.211 6.211 20 O -0.136 6.136 21 C 0.023 3.977 22 H 0.274 0.726 23 H 0.407 0.593 24 H 0.173 0.827 25 H 0.205 0.795 26 H 0.190 0.810 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.594 -2.452 6.203 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.219 4.219 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.446 4.446 8 H 0.139 0.861 9 N -0.717 5.717 10 S 2.744 3.256 11 O -1.001 7.001 12 O -0.968 6.968 13 C -0.757 4.757 14 C 0.004 3.996 15 C -0.135 4.135 16 C -0.027 4.027 17 C -0.168 4.168 18 N 0.549 4.451 19 O -0.415 6.415 20 O -0.361 6.361 21 C 0.003 3.997 22 H 0.084 0.916 23 H 0.242 0.758 24 H 0.190 0.810 25 H 0.222 0.778 26 H 0.207 0.793 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.892 -2.819 4.962 13.190 hybrid contribution -0.847 0.632 0.975 1.438 sum 11.045 -2.188 5.937 12.729 Atomic orbital electron populations 1.69796 1.07557 1.29134 1.49759 1.26119 0.96343 1.02711 0.96758 0.85109 0.77864 0.76519 0.79764 1.18726 1.21333 1.18210 1.19647 0.92961 0.83224 1.48742 0.86142 1.51567 1.16881 1.19508 1.83705 1.04223 0.72775 0.72543 0.76013 1.93447 1.60581 1.57913 1.88197 1.93484 1.61839 1.87011 1.54506 1.31794 1.09909 1.11834 1.22208 1.21868 0.90195 0.87120 1.00425 1.21923 1.03029 0.98759 0.89789 1.21760 0.89718 0.88750 1.02424 1.21397 0.98064 1.11227 0.86084 1.43774 1.00528 0.98313 1.02507 1.94588 1.04420 1.51025 1.91426 1.94451 1.63896 1.60161 1.17575 1.20684 0.99883 0.89807 0.89336 0.91627 0.75824 0.80951 0.77763 0.79278 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.83 13.06 21.65 0.28 -47.55 15 2 C -0.02 -0.77 5.50 84.86 0.47 -0.30 15 3 Si 0.98 37.09 29.55 68.60 2.03 39.11 15 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 5 H -0.29 -11.05 7.11 99.48 0.71 -10.35 15 6 H -0.26 -8.98 7.11 99.48 0.71 -8.28 15 7 C -0.31 -14.30 9.63 84.03 0.81 -13.49 15 8 H 0.12 4.93 7.82 -2.91 -0.02 4.91 15 9 N -0.96 -43.64 5.75 -54.26 -0.31 -43.95 15 10 S 2.65 106.30 5.70 -56.49 -0.32 105.98 15 11 O -1.01 -44.96 17.28 -128.00 -2.21 -47.17 15 12 O -0.98 -41.59 16.98 -128.00 -2.17 -43.77 15 13 C -0.67 -22.16 5.89 22.27 0.13 -22.03 15 14 C 0.02 0.58 9.52 22.27 0.21 0.79 15 15 C -0.12 -2.04 10.05 22.27 0.22 -1.81 15 16 C -0.01 -0.16 9.56 22.27 0.21 0.06 15 17 C -0.08 -2.45 6.85 36.37 0.25 -2.20 15 18 N 0.03 1.03 4.45 -46.46 -0.21 0.83 15 19 O -0.21 -7.65 18.45 18.89 0.35 -7.30 15 20 O -0.14 -4.02 18.45 18.88 0.35 -3.67 15 21 C 0.02 0.78 9.03 22.27 0.20 0.98 15 22 H 0.27 13.57 8.31 -92.71 -0.77 12.80 15 23 H 0.41 19.43 8.02 -96.74 -0.78 18.66 15 24 H 0.17 3.79 7.61 -2.91 -0.02 3.77 15 25 H 0.21 1.49 8.06 -2.91 -0.02 1.47 15 26 H 0.19 2.54 7.61 -2.91 -0.02 2.52 15 27 H 0.15 5.27 7.17 -2.91 -0.02 5.25 15 Total: -1.00 -64.33 271.63 0.75 -63.58 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.46 Total: 21.93 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 2.51 Total: -38.01 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -0.24 Total: -90.67 kcal Atomic # 8 Polarization: -98.22 SS G_CDS: -3.69 Total: -101.91 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 16 Polarization: 106.30 SS G_CDS: -0.32 Total: 105.98 kcal Total: -64.33 0.75 -63.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714362.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.369 kcal (2) G-P(sol) polarization free energy of solvation -64.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds