Wall clock time and date at job start Mon Mar 30 2020 06:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99647 * 2 1 4 4 H 1.48502 * 109.47260 * 269.99429 * 3 2 1 5 5 H 1.48494 * 109.47763 * 29.99997 * 3 2 1 6 6 H 1.48503 * 109.47123 * 149.99791 * 3 2 1 7 7 C 1.37875 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00336 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99713 * 180.02562 * 7 2 1 10 10 O 1.42096 * 106.40354 * 66.46192 * 9 7 2 11 11 O 1.42098 * 106.40178 * 293.53904 * 9 7 2 12 12 N 1.65604 * 107.21544 * 180.02562 * 9 7 2 13 13 C 1.39676 * 120.00552 * 65.00107 * 12 9 7 14 14 C 1.38926 * 120.07182 * 44.99507 * 13 12 9 15 15 C 1.38089 * 119.92422 * 179.97438 * 14 13 12 16 16 C 1.38301 * 120.07155 * 0.28052 * 15 14 13 17 17 C 1.38266 * 120.15343 * 359.44513 * 16 15 14 18 18 N 1.48000 * 119.96579 * 180.27600 * 17 16 15 19 19 O 1.21801 * 120.00023 * 180.27755 * 18 17 16 20 20 O 1.21803 * 120.00067 * 0.27578 * 18 17 16 21 21 C 1.38134 * 120.07086 * 0.55323 * 17 16 15 22 22 H 0.97001 * 120.00401 * 0.02562 * 1 2 3 23 23 H 0.97009 * 119.99802 * 244.99835 * 12 9 7 24 24 H 1.07999 * 120.03920 * 0.02562 * 14 13 12 25 25 H 1.08002 * 119.96096 * 179.97438 * 15 14 13 26 26 H 1.08001 * 119.92197 * 179.69817 * 16 15 14 27 27 H 1.07998 * 120.03610 * 179.74416 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1673 -0.6493 1.2510 11 8 4.1682 -0.6498 -1.2485 12 7 4.2567 -2.7758 0.0011 13 6 3.9756 -3.5940 -1.0955 14 6 4.1822 -3.1236 -2.3862 15 6 3.9038 -3.9353 -3.4681 16 6 3.4144 -5.2132 -3.2678 17 6 3.2130 -5.6866 -1.9845 18 7 2.6949 -7.0571 -1.7749 19 8 2.5125 -7.4730 -0.6447 20 8 2.4509 -7.7690 -2.7326 21 6 3.4895 -4.8799 -0.8978 22 1 -0.4851 0.8400 -0.0004 23 1 4.7392 -3.1341 0.7626 24 1 4.5608 -2.1244 -2.5434 25 1 4.0637 -3.5700 -4.4718 26 1 3.1929 -5.8443 -4.1158 27 1 3.3281 -5.2488 0.1043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509609.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:24 Heat of formation + Delta-G solvation = -53.394149 kcal Electronic energy + Delta-G solvation = -18586.232882 eV Core-core repulsion = 15246.585484 eV Total energy + Delta-G solvation = -3339.647399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.06795 -39.57315 -36.47132 -36.07498 -35.03905 -34.84055 -33.23836 -31.79361 -29.35517 -26.64890 -26.45246 -22.85579 -22.33871 -19.83345 -19.12040 -18.59728 -17.71868 -17.43520 -17.24820 -16.50753 -16.32825 -15.33857 -15.20006 -14.33656 -14.07018 -13.63633 -13.25124 -13.04974 -12.59222 -12.03493 -11.84559 -11.57108 -11.48247 -11.20560 -11.14949 -11.04961 -10.92733 -10.78881 -10.52639 -10.10075 -9.49823 -9.40477 -9.34656 -8.50286 -6.98998 -5.58324 -0.04431 0.94659 1.43072 1.47794 1.69245 2.92684 3.01631 3.09086 3.35973 3.71998 3.78334 4.39449 4.48260 4.63227 4.81808 4.95985 5.01518 5.12224 5.38416 5.69917 5.75213 5.86159 6.07360 6.28794 6.36912 6.60043 7.18767 7.28273 7.74976 7.99174 8.48434 10.12933 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.005980 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.798313 B = 4681.126155 C = 4842.601289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.154 3.846 3 Si 0.803 3.197 4 H -0.244 1.244 5 H -0.252 1.252 6 H -0.221 1.221 7 C -1.014 5.014 8 H 0.123 0.877 9 S 2.665 3.335 10 O -0.991 6.991 11 O -1.000 7.000 12 N -1.060 6.060 13 C 0.182 3.818 14 C -0.096 4.096 15 C -0.094 4.094 16 C -0.078 4.078 17 C -0.030 4.030 18 N 0.033 4.967 19 O -0.164 6.164 20 O -0.166 6.166 21 C -0.081 4.081 22 H 0.284 0.716 23 H 0.421 0.579 24 H 0.179 0.821 25 H 0.152 0.848 26 H 0.151 0.849 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.442 -6.481 -5.106 11.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.067 4.067 3 Si 0.622 3.378 4 H -0.167 1.167 5 H -0.176 1.176 6 H -0.143 1.143 7 C -1.149 5.149 8 H 0.141 0.859 9 S 2.768 3.232 10 O -0.981 6.981 11 O -0.989 6.989 12 N -0.804 5.804 13 C 0.083 3.917 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.098 4.098 17 C -0.114 4.114 18 N 0.551 4.449 19 O -0.380 6.380 20 O -0.382 6.382 21 C -0.104 4.104 22 H 0.095 0.905 23 H 0.256 0.744 24 H 0.196 0.804 25 H 0.170 0.830 26 H 0.169 0.831 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.043 -4.879 -5.267 10.781 hybrid contribution -0.557 -0.127 0.544 0.788 sum 7.486 -5.006 -4.724 10.169 Atomic orbital electron populations 1.69970 1.06574 1.29398 1.38248 1.24409 0.94844 0.98783 0.88649 0.87843 0.83468 0.84445 0.81999 1.16735 1.17573 1.14324 1.30210 1.14350 1.02584 1.67774 0.85888 1.01922 0.77872 0.69657 0.73724 1.93521 1.85625 1.74340 1.44606 1.93352 1.85289 1.75172 1.45123 1.53658 1.70288 1.31683 1.24804 1.17098 0.96785 0.90140 0.87665 1.22579 0.95505 1.02918 0.90713 1.21087 0.98213 0.91945 1.00101 1.21022 0.96898 0.96905 0.94946 1.20811 1.10588 0.83589 0.96368 1.43620 0.97986 1.02866 1.00392 1.94536 1.56270 1.77493 1.09682 1.94504 1.54656 1.55173 1.33818 1.20963 0.96411 0.93513 0.99511 0.90538 0.74385 0.80360 0.83032 0.83084 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.46 13.96 55.43 0.77 -21.69 15 2 C 0.15 4.17 5.47 -17.82 -0.10 4.08 15 3 Si 0.80 19.17 26.54 -169.99 -4.51 14.66 15 4 H -0.24 -5.62 7.11 56.52 0.40 -5.22 15 5 H -0.25 -5.57 7.11 56.52 0.40 -5.17 15 6 H -0.22 -5.33 5.61 56.52 0.32 -5.01 15 7 C -1.01 -26.44 10.22 30.60 0.31 -26.13 15 8 H 0.12 3.31 8.06 -52.49 -0.42 2.88 15 9 S 2.66 59.55 4.16 -107.50 -0.45 59.10 15 10 O -0.99 -24.17 16.02 -57.17 -0.92 -25.09 15 11 O -1.00 -22.79 13.75 -57.17 -0.79 -23.58 15 12 N -1.06 -17.91 5.77 32.41 0.19 -17.73 15 13 C 0.18 2.91 6.21 -83.79 -0.52 2.39 15 14 C -0.10 -1.45 9.18 -39.38 -0.36 -1.81 15 15 C -0.09 -1.13 10.04 -39.61 -0.40 -1.53 15 16 C -0.08 -0.96 9.55 -39.55 -0.38 -1.34 15 17 C -0.03 -0.44 6.85 -79.98 -0.55 -0.99 15 18 N 0.03 0.52 4.45 33.95 0.15 0.67 15 19 O -0.16 -2.73 18.45 -29.46 -0.54 -3.27 15 20 O -0.17 -2.62 18.44 -29.46 -0.54 -3.16 15 21 C -0.08 -1.21 9.48 -39.38 -0.37 -1.58 15 22 H 0.28 7.08 8.31 -40.82 -0.34 6.74 15 23 H 0.42 5.71 8.96 -34.48 -0.31 5.40 15 24 H 0.18 2.84 5.58 -52.49 -0.29 2.55 15 25 H 0.15 1.29 8.06 -52.49 -0.42 0.86 15 26 H 0.15 1.52 7.60 -52.49 -0.40 1.12 15 27 H 0.16 2.13 7.61 -52.49 -0.40 1.73 15 LS Contribution 262.53 15.07 3.96 3.96 Total: -1.00 -30.64 262.53 -6.51 -37.14 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -1.47 Total: 5.88 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -2.36 Total: -26.90 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 1.11 Total: -38.74 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -2.79 Total: -55.10 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.51 Total: 14.66 kcal Atomic # 16 Polarization: 59.55 SS G_CDS: -0.45 Total: 59.10 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.64 -6.51 -37.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509609.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.251 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds