Wall clock time and date at job start Mon Mar 30 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99647 * 2 1 4 4 H 1.48502 * 109.47260 * 269.99429 * 3 2 1 5 5 H 1.48494 * 109.47763 * 29.99997 * 3 2 1 6 6 H 1.48503 * 109.47123 * 149.99791 * 3 2 1 7 7 C 1.37875 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00336 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99713 * 180.02562 * 7 2 1 10 10 O 1.42096 * 106.40354 * 66.46192 * 9 7 2 11 11 O 1.42098 * 106.40178 * 293.53904 * 9 7 2 12 12 N 1.65604 * 107.21544 * 180.02562 * 9 7 2 13 13 C 1.39676 * 120.00552 * 65.00107 * 12 9 7 14 14 C 1.38926 * 120.07182 * 44.99507 * 13 12 9 15 15 C 1.38089 * 119.92422 * 179.97438 * 14 13 12 16 16 C 1.38301 * 120.07155 * 0.28052 * 15 14 13 17 17 C 1.38266 * 120.15343 * 359.44513 * 16 15 14 18 18 N 1.48000 * 119.96579 * 180.27600 * 17 16 15 19 19 O 1.21801 * 120.00023 * 180.27755 * 18 17 16 20 20 O 1.21803 * 120.00067 * 0.27578 * 18 17 16 21 21 C 1.38134 * 120.07086 * 0.55323 * 17 16 15 22 22 H 0.97001 * 120.00401 * 0.02562 * 1 2 3 23 23 H 0.97009 * 119.99802 * 244.99835 * 12 9 7 24 24 H 1.07999 * 120.03920 * 0.02562 * 14 13 12 25 25 H 1.08002 * 119.96096 * 179.97438 * 15 14 13 26 26 H 1.08001 * 119.92197 * 179.69817 * 16 15 14 27 27 H 1.07998 * 120.03610 * 179.74416 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1673 -0.6493 1.2510 11 8 4.1682 -0.6498 -1.2485 12 7 4.2567 -2.7758 0.0011 13 6 3.9756 -3.5940 -1.0955 14 6 4.1822 -3.1236 -2.3862 15 6 3.9038 -3.9353 -3.4681 16 6 3.4144 -5.2132 -3.2678 17 6 3.2130 -5.6866 -1.9845 18 7 2.6949 -7.0571 -1.7749 19 8 2.5125 -7.4730 -0.6447 20 8 2.4509 -7.7690 -2.7326 21 6 3.4895 -4.8799 -0.8978 22 1 -0.4851 0.8400 -0.0004 23 1 4.7392 -3.1341 0.7626 24 1 4.5608 -2.1244 -2.5434 25 1 4.0637 -3.5700 -4.4718 26 1 3.1929 -5.8443 -4.1158 27 1 3.3281 -5.2488 0.1043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509609.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:23 Heat of formation + Delta-G solvation = -75.480130 kcal Electronic energy + Delta-G solvation = -18587.190602 eV Core-core repulsion = 15246.585484 eV Total energy + Delta-G solvation = -3340.605119 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.28479 -40.73864 -37.89756 -37.70877 -36.71063 -36.32171 -35.25110 -32.91497 -30.57953 -28.65672 -27.65041 -23.97298 -23.57230 -21.41459 -20.59554 -19.86027 -19.44748 -18.89570 -18.64261 -17.95568 -17.49033 -17.12786 -16.43025 -16.04814 -15.51751 -15.11343 -15.00345 -14.49017 -13.89928 -13.65710 -13.36623 -13.13346 -12.95981 -12.75415 -12.72738 -12.50458 -12.41335 -12.31209 -12.00722 -11.80917 -11.37571 -11.25440 -10.59420 -9.76437 -9.01304 -7.62443 -1.24159 -0.36035 0.06497 0.28888 0.36194 1.05205 1.14007 1.19544 1.85548 2.17265 2.25522 2.38404 3.06228 3.46714 3.53490 3.68554 3.83627 3.94946 4.12382 4.30104 4.64717 4.78039 4.97669 5.08839 5.15893 5.30813 5.47922 5.91601 5.95479 6.46369 6.49461 8.16305 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.005980 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.798313 B = 4681.126155 C = 4842.601289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.109 3.891 3 Si 0.828 3.172 4 H -0.230 1.230 5 H -0.225 1.225 6 H -0.226 1.226 7 C -1.039 5.039 8 H 0.101 0.899 9 S 2.697 3.303 10 O -1.012 7.012 11 O -1.002 7.002 12 N -1.048 6.048 13 C 0.156 3.844 14 C -0.109 4.109 15 C -0.078 4.078 16 C -0.062 4.062 17 C -0.044 4.044 18 N 0.033 4.967 19 O -0.198 6.198 20 O -0.151 6.151 21 C -0.085 4.085 22 H 0.293 0.707 23 H 0.435 0.565 24 H 0.171 0.829 25 H 0.195 0.805 26 H 0.182 0.818 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.431 -6.450 -6.799 12.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.108 4.108 3 Si 0.645 3.355 4 H -0.153 1.153 5 H -0.147 1.147 6 H -0.148 1.148 7 C -1.172 5.172 8 H 0.119 0.881 9 S 2.798 3.202 10 O -1.003 7.003 11 O -0.992 6.992 12 N -0.798 5.798 13 C 0.059 3.941 14 C -0.130 4.130 15 C -0.097 4.097 16 C -0.082 4.082 17 C -0.127 4.127 18 N 0.549 4.451 19 O -0.406 6.406 20 O -0.372 6.372 21 C -0.108 4.108 22 H 0.104 0.896 23 H 0.274 0.726 24 H 0.188 0.812 25 H 0.212 0.788 26 H 0.200 0.800 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.003 -4.848 -6.882 12.325 hybrid contribution -0.846 -0.286 0.938 1.295 sum 8.156 -5.133 -5.945 11.323 Atomic orbital electron populations 1.70014 1.07742 1.30766 1.39604 1.25196 0.95606 1.01612 0.88408 0.87437 0.82745 0.82246 0.83103 1.15263 1.14722 1.14801 1.30810 1.17438 1.01703 1.67223 0.88122 1.00839 0.75774 0.70619 0.72966 1.93486 1.85235 1.75937 1.45611 1.93346 1.84551 1.76262 1.45052 1.53042 1.70218 1.30428 1.26131 1.17252 0.98730 0.90499 0.87665 1.22722 0.95939 1.03165 0.91221 1.21534 0.96077 0.90991 1.01091 1.21466 0.94765 0.97184 0.94769 1.21016 1.11401 0.82971 0.97342 1.43789 0.97798 1.03280 1.00215 1.94548 1.57966 1.78082 1.10005 1.94475 1.53673 1.55392 1.33611 1.20973 0.96299 0.93315 1.00173 0.89647 0.72626 0.81163 0.78770 0.80036 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.54 13.96 21.45 0.30 -47.24 15 2 C 0.11 5.94 5.47 84.65 0.46 6.40 15 3 Si 0.83 38.12 26.54 68.60 1.82 39.94 15 4 H -0.23 -10.00 7.11 99.48 0.71 -9.29 15 5 H -0.22 -9.30 7.11 99.48 0.71 -8.59 15 6 H -0.23 -10.53 5.61 99.48 0.56 -9.97 15 7 C -1.04 -54.87 10.22 67.73 0.69 -54.18 15 8 H 0.10 5.59 8.06 -2.91 -0.02 5.57 15 9 S 2.70 119.22 4.16 -56.49 -0.24 118.98 15 10 O -1.01 -48.87 16.02 -128.00 -2.05 -50.92 15 11 O -1.00 -44.52 13.75 -128.00 -1.76 -46.28 15 12 N -1.05 -34.91 5.77 -51.37 -0.30 -35.20 15 13 C 0.16 4.85 6.21 38.21 0.24 5.09 15 14 C -0.11 -3.07 9.18 22.40 0.21 -2.86 15 15 C -0.08 -1.59 10.04 22.25 0.22 -1.36 15 16 C -0.06 -1.32 9.55 22.29 0.21 -1.11 15 17 C -0.04 -1.20 6.85 36.36 0.25 -0.95 15 18 N 0.03 1.00 4.45 -46.52 -0.21 0.79 15 19 O -0.20 -6.57 18.45 18.89 0.35 -6.22 15 20 O -0.15 -4.41 18.44 18.88 0.35 -4.07 15 21 C -0.08 -2.46 9.48 22.40 0.21 -2.25 15 22 H 0.29 14.68 8.31 -92.71 -0.77 13.91 15 23 H 0.44 11.58 8.96 -96.73 -0.87 10.71 15 24 H 0.17 5.12 5.58 -2.91 -0.02 5.10 15 25 H 0.20 2.26 8.06 -2.91 -0.02 2.24 15 26 H 0.18 2.78 7.60 -2.91 -0.02 2.76 15 27 H 0.16 4.39 7.61 -2.91 -0.02 4.36 15 Total: -1.00 -65.62 262.53 0.99 -64.63 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.23 Total: 16.80 kcal Atomic # 6 Polarization: -53.72 SS G_CDS: 2.50 Total: -51.23 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -0.20 Total: -81.65 kcal Atomic # 8 Polarization: -104.37 SS G_CDS: -3.11 Total: -107.49 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.82 Total: 39.94 kcal Atomic # 16 Polarization: 119.22 SS G_CDS: -0.24 Total: 118.98 kcal Total: -65.62 0.99 -64.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509609.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.845 kcal (2) G-P(sol) polarization free energy of solvation -65.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds