Wall clock time and date at job start Mon Mar 30 2020 06:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99680 * 2 1 4 4 H 1.48502 * 109.47230 * 239.99873 * 3 2 1 5 5 H 1.48498 * 109.47170 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47255 * 119.99927 * 3 2 1 7 7 C 1.37877 * 120.00454 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00225 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99700 * 359.97438 * 7 2 1 10 10 O 1.42099 * 104.27604 * 63.93060 * 9 7 2 11 11 O 1.42095 * 104.28051 * 296.07149 * 9 7 2 12 12 C 1.81400 * 104.44799 * 179.97438 * 9 7 2 13 13 C 1.50706 * 109.47256 * 179.97438 * 12 9 7 14 14 O 1.21279 * 119.99507 * 0.02562 * 13 12 9 15 15 C 1.47011 * 120.00202 * 180.02562 * 13 12 9 16 16 C 1.39945 * 120.14559 * 359.73171 * 15 13 12 17 17 C 1.37739 * 119.85306 * 179.73940 * 16 15 13 18 18 C 1.38721 * 120.14563 * 0.53643 * 17 16 15 19 19 F 1.35095 * 119.85396 * 179.69986 * 18 17 16 20 20 C 1.38718 * 120.29097 * 359.71004 * 18 17 16 21 21 C 1.37742 * 120.14864 * 0.03517 * 20 18 17 22 22 H 0.96997 * 120.00242 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46713 * 60.00337 * 12 9 7 24 24 H 1.09000 * 109.47712 * 300.00645 * 12 9 7 25 25 H 1.08003 * 120.06841 * 359.97438 * 16 15 13 26 26 H 1.08001 * 119.92728 * 180.24971 * 17 16 15 27 27 H 1.08007 * 119.92519 * 179.97438 * 20 18 17 28 28 H 1.08000 * 120.07524 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 16 1.1237 -2.7199 0.0019 10 8 0.4239 -2.7217 -1.2348 11 8 0.4248 -2.7201 1.2391 12 6 2.4187 -3.9902 0.0015 13 6 1.7824 -5.3563 0.0032 14 8 0.5743 -5.4625 0.0041 15 6 2.6261 -6.5602 0.0038 16 6 4.0205 -6.4412 -0.0030 17 6 4.8053 -7.5732 0.0031 18 6 4.2164 -8.8292 0.0045 19 9 4.9917 -9.9355 0.0043 20 6 2.8348 -8.9542 0.0060 21 6 2.0385 -7.8302 0.0053 22 1 -0.4850 0.8400 -0.0004 23 1 3.0385 -3.8774 0.8910 24 1 3.0373 -3.8782 -0.8890 25 1 4.4802 -5.4639 -0.0090 26 1 5.8815 -7.4827 0.0020 27 1 2.3825 -9.9350 0.0067 28 1 0.9630 -7.9289 0.0061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058254991.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:19 Heat of formation + Delta-G solvation = -167.475610 kcal Electronic energy + Delta-G solvation = -17944.633743 eV Core-core repulsion = 14580.119439 eV Total energy + Delta-G solvation = -3364.514304 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.035 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.05447 -41.25554 -39.22321 -37.18311 -36.13174 -35.05675 -33.15431 -32.15605 -30.53925 -28.21441 -24.97528 -23.98177 -21.64679 -20.48274 -19.14832 -18.70379 -17.95727 -17.72791 -17.24290 -16.90617 -16.64797 -16.49769 -15.99835 -15.64751 -15.54298 -15.13908 -14.61599 -14.20593 -13.94699 -13.87539 -13.63127 -13.27878 -13.26839 -12.92853 -12.37342 -12.31220 -12.27811 -12.11668 -11.63880 -11.18326 -11.15601 -10.68262 -10.25403 -9.92050 -8.67365 -7.42665 -0.68220 -0.12440 0.15929 1.03834 1.37938 1.42350 1.54242 2.21620 2.51416 2.51645 2.65807 3.07202 3.41543 3.63169 3.73831 3.79132 3.81568 3.95210 4.14226 4.20946 4.41092 4.68806 4.74672 4.86803 4.97210 5.03802 5.18148 5.31362 5.69853 5.92401 6.09626 6.84249 8.29554 Molecular weight = 272.04amu Principal moments of inertia in cm(-1) A = 0.040776 B = 0.004444 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.517503 B = 6299.491073 C = 6808.260507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.995 3.005 4 H -0.245 1.245 5 H -0.273 1.273 6 H -0.245 1.245 7 C -1.028 5.028 8 H 0.137 0.863 9 S 2.520 3.480 10 O -1.023 7.023 11 O -1.023 7.023 12 C -0.668 4.668 13 C 0.418 3.582 14 O -0.496 6.496 15 C -0.191 4.191 16 C -0.031 4.031 17 C -0.159 4.159 18 C 0.128 3.872 19 F -0.135 7.135 20 C -0.164 4.164 21 C -0.042 4.042 22 H 0.294 0.706 23 H 0.201 0.799 24 H 0.201 0.799 25 H 0.177 0.823 26 H 0.175 0.825 27 H 0.163 0.837 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.976 -13.618 -0.004 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.151 4.151 3 Si 0.812 3.188 4 H -0.168 1.168 5 H -0.197 1.197 6 H -0.168 1.168 7 C -1.161 5.161 8 H 0.155 0.845 9 S 2.710 3.290 10 O -1.020 7.020 11 O -1.020 7.020 12 C -0.795 4.795 13 C 0.299 3.701 14 O -0.374 6.374 15 C -0.193 4.193 16 C -0.049 4.049 17 C -0.177 4.177 18 C 0.108 3.892 19 F -0.113 7.113 20 C -0.183 4.183 21 C -0.060 4.060 22 H 0.104 0.896 23 H 0.218 0.782 24 H 0.219 0.781 25 H 0.195 0.805 26 H 0.193 0.807 27 H 0.181 0.819 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.261 -13.815 -0.003 19.150 hybrid contribution 0.518 0.635 0.000 0.819 sum 13.779 -13.181 -0.003 19.068 Atomic orbital electron populations 1.70104 1.09205 1.31933 1.40851 1.26172 0.95345 1.05767 0.87814 0.85106 0.78588 0.74001 0.81057 1.16849 1.19728 1.16840 1.30651 1.07366 1.11154 1.66909 0.84525 1.03340 0.76151 0.76711 0.72786 1.93282 1.73156 1.87971 1.47579 1.93282 1.73179 1.87966 1.47558 1.31042 1.22378 1.09433 1.16688 1.22055 0.88103 0.90475 0.69460 1.90673 1.18301 1.89574 1.38884 1.20274 0.95469 0.93049 1.10522 1.21736 0.90532 1.01146 0.91469 1.21458 1.02992 0.89678 1.03588 1.18255 0.88848 0.83254 0.98833 1.91531 1.74799 1.51687 1.93287 1.21277 0.91719 1.00765 1.04491 1.21406 1.01376 0.90653 0.92606 0.89610 0.78154 0.78141 0.80538 0.80716 0.81908 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.66 13.03 21.45 0.28 -54.38 15 2 C 0.06 3.40 5.46 84.65 0.46 3.86 15 3 Si 0.99 40.15 29.54 68.60 2.03 42.17 15 4 H -0.25 -9.05 7.11 99.48 0.71 -8.35 15 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 15 6 H -0.25 -9.05 7.11 99.48 0.71 -8.34 15 7 C -1.03 -53.80 9.32 67.73 0.63 -53.17 15 8 H 0.14 5.82 7.81 -2.91 -0.02 5.80 15 9 S 2.52 133.72 3.61 -56.49 -0.20 133.52 15 10 O -1.02 -63.09 17.85 -127.64 -2.28 -65.36 15 11 O -1.02 -63.09 17.85 -127.64 -2.28 -65.36 15 12 C -0.67 -21.68 5.07 71.24 0.36 -21.32 15 13 C 0.42 14.52 7.13 27.99 0.20 14.72 15 14 O -0.50 -22.19 15.85 -3.02 -0.05 -22.24 15 15 C -0.19 -4.78 5.87 -20.15 -0.12 -4.90 15 16 C -0.03 -0.52 9.47 22.57 0.21 -0.31 15 17 C -0.16 -2.23 10.01 22.27 0.22 -2.01 15 18 C 0.13 2.13 7.31 22.50 0.16 2.29 15 19 F -0.13 -2.29 17.26 44.97 0.78 -1.51 15 20 C -0.16 -2.89 10.01 22.27 0.22 -2.67 15 21 C -0.04 -0.97 9.59 22.56 0.22 -0.75 15 22 H 0.29 16.34 8.31 -92.71 -0.77 15.57 15 23 H 0.20 4.67 8.09 -2.39 -0.02 4.65 15 24 H 0.20 4.67 8.08 -2.39 -0.02 4.65 15 25 H 0.18 1.88 7.05 -2.91 -0.02 1.86 15 26 H 0.18 1.37 8.06 -2.91 -0.02 1.35 15 27 H 0.16 2.10 8.06 -2.91 -0.02 2.08 15 28 H 0.14 3.34 7.65 -2.91 -0.02 3.32 15 Total: -1.00 -86.85 278.66 2.05 -84.80 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.20 Total: 12.61 kcal Atomic # 6 Polarization: -66.82 SS G_CDS: 2.58 Total: -64.24 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.28 Total: -54.38 kcal Atomic # 8 Polarization: -148.36 SS G_CDS: -4.61 Total: -152.96 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.78 Total: -1.51 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 133.72 SS G_CDS: -0.20 Total: 133.52 kcal Total: -86.85 2.05 -84.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254991.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.678 kcal (2) G-P(sol) polarization free energy of solvation -86.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds