Wall clock time and date at job start Mon Mar 30 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29498 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47231 * 90.87496 * 3 2 1 5 5 H 1.48500 * 109.46971 * 210.87364 * 3 2 1 6 6 H 1.48492 * 109.47276 * 330.87528 * 3 2 1 7 7 C 1.46548 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99863 * 12.32212 * 7 2 1 9 9 C 1.40344 * 120.00101 * 192.31511 * 7 2 1 10 10 C 1.41291 * 120.28639 * 33.79197 * 9 7 2 11 11 C 1.36485 * 119.69237 * 180.02562 * 10 9 7 12 12 C 1.38822 * 120.29820 * 359.97411 * 11 10 9 13 13 S 1.76200 * 119.70239 * 180.02562 * 12 11 10 14 14 N 1.65598 * 107.21901 * 89.99785 * 13 12 11 15 15 O 1.42100 * 106.40184 * 203.53785 * 13 12 11 16 16 O 1.42104 * 106.40040 * 336.45872 * 13 12 11 17 17 C 1.38773 * 120.59510 * 0.04678 * 12 11 10 18 18 C 1.36518 * 120.30422 * 359.66311 * 17 12 11 19 19 N 1.48013 * 120.15897 * 180.30557 * 18 17 12 20 20 O 1.31697 * 119.99986 * 6.17146 * 19 18 17 21 21 O 1.31704 * 119.99998 * 186.17116 * 19 18 17 22 22 H 0.96999 * 120.00168 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.15929 * 0.02562 * 10 9 7 24 24 H 1.07995 * 119.85459 * 179.97438 * 11 10 9 25 25 H 0.97003 * 120.00161 * 359.97438 * 14 13 12 26 26 H 0.97000 * 120.00304 * 179.97438 * 14 13 12 27 27 H 1.08006 * 119.84508 * 180.02562 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 2.4950 2.0357 1.3999 5 1 3.5171 1.4455 -0.7185 6 1 1.4173 2.6579 -0.6814 7 6 2.0277 -1.2691 -0.0006 8 1 1.5063 -2.1936 -0.2006 9 6 3.4069 -1.2833 0.2587 10 6 3.9718 -0.3550 1.1618 11 6 5.3146 -0.3793 1.4045 12 6 6.1245 -1.3107 0.7691 13 16 7.8561 -1.3284 1.0946 14 7 8.1038 -2.3486 2.3752 15 8 8.4697 -1.9411 -0.0311 16 8 8.1922 -0.0247 1.5493 17 6 5.5827 -2.2277 -0.1205 18 6 4.2418 -2.2291 -0.3768 19 7 3.6663 -3.2130 -1.3211 20 8 4.4246 -4.1657 -1.8227 21 8 2.3958 -3.1356 -1.6597 22 1 -0.4850 0.8400 -0.0004 23 1 3.3439 0.3704 1.6578 24 1 5.7492 0.3293 2.0940 25 1 7.3509 -2.7988 2.7894 26 1 9.0017 -2.4962 2.7112 27 1 6.2239 -2.9473 -0.6078 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063046433.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:37 Heat of formation + Delta-G solvation = -71.000472 kcal Electronic energy + Delta-G solvation = -18719.925920 eV Core-core repulsion = 15379.515054 eV Total energy + Delta-G solvation = -3340.410866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69685 -38.61885 -38.10782 -36.81820 -36.35566 -34.92277 -33.95253 -33.20663 -32.52622 -28.52057 -26.64851 -24.03955 -22.91546 -20.58677 -20.33391 -19.60157 -18.65611 -18.27606 -17.79279 -17.60060 -16.71201 -16.64953 -16.51670 -15.92557 -15.80700 -15.11089 -14.72582 -14.23469 -13.58770 -13.20764 -13.17053 -13.09447 -13.08412 -12.98688 -12.74221 -12.26195 -11.91853 -11.81411 -11.55170 -11.41596 -11.26119 -11.25364 -10.49194 -10.35847 -9.58875 -7.37488 -1.28764 -0.43907 -0.03559 0.60878 0.85441 1.10540 1.24218 1.38680 1.78850 2.00025 2.34199 2.59782 2.87539 3.57061 3.68407 3.99832 4.10800 4.26183 4.44905 4.60937 4.64417 5.02564 5.21675 5.25446 5.36231 5.40691 5.56152 5.90117 6.03444 6.34805 6.43985 7.32343 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.020069 B = 0.007973 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.853829 B = 3511.093584 C = 4588.197519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.030 3.970 3 Si 0.964 3.036 4 H -0.208 1.208 5 H -0.254 1.254 6 H -0.250 1.250 7 C -0.272 4.272 8 H 0.106 0.894 9 C 0.039 3.961 10 C -0.197 4.197 11 C -0.003 4.003 12 C -0.757 4.757 13 S 2.744 3.256 14 N -1.235 6.235 15 O -1.008 7.008 16 O -0.990 6.990 17 C 0.090 3.910 18 C -0.114 4.114 19 N 0.031 4.969 20 O -0.359 6.359 21 O -0.305 6.305 22 H 0.334 0.666 23 H 0.151 0.849 24 H 0.169 0.831 25 H 0.428 0.572 26 H 0.429 0.571 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 6.434 9.923 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.204 4.204 3 Si 0.780 3.220 4 H -0.131 1.131 5 H -0.178 1.178 6 H -0.175 1.175 7 C -0.298 4.298 8 H 0.123 0.877 9 C 0.034 3.966 10 C -0.217 4.217 11 C -0.022 4.022 12 C -0.849 4.849 13 S 2.833 3.167 14 N -0.914 5.914 15 O -0.997 6.997 16 O -0.979 6.979 17 C 0.069 3.931 18 C -0.217 4.217 19 N 0.446 4.554 20 O -0.502 6.502 21 O -0.461 6.461 22 H 0.149 0.851 23 H 0.168 0.832 24 H 0.187 0.813 25 H 0.258 0.742 26 H 0.261 0.739 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.035 7.127 9.394 13.731 hybrid contribution -1.234 -0.907 -0.431 1.591 sum 5.800 6.220 8.964 12.356 Atomic orbital electron populations 1.68850 1.10336 1.36091 1.17273 1.28963 0.95908 1.04743 0.90819 0.85548 0.79666 0.73441 0.83365 1.13064 1.17752 1.17487 1.22632 0.91738 0.96741 1.18680 0.87655 1.17490 0.92514 0.92893 0.93722 1.21268 0.96357 1.02530 1.01510 1.20594 0.92453 0.93975 0.95199 1.29991 1.25336 1.11865 1.17739 0.99940 0.71418 0.72749 0.72551 1.52695 1.18791 1.66461 1.53494 1.93542 1.75401 1.77786 1.52956 1.93532 1.82622 1.40019 1.81722 1.20265 0.91899 0.92459 0.88518 1.20284 0.94299 1.01845 1.05297 1.50101 1.01858 1.01869 1.01619 1.96073 1.58602 1.30608 1.64946 1.96086 0.95810 1.82607 1.71556 0.85120 0.83176 0.81321 0.74207 0.73859 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -27.69 13.89 23.21 0.32 -27.37 15 2 C 0.03 1.18 5.63 87.21 0.49 1.67 15 3 Si 0.96 29.41 24.66 68.60 1.69 31.11 15 4 H -0.21 -5.09 6.61 99.48 0.66 -4.44 15 5 H -0.25 -8.74 6.97 99.48 0.69 -8.05 15 6 H -0.25 -6.91 7.11 99.48 0.71 -6.20 15 7 C -0.27 -12.67 8.49 24.95 0.21 -12.46 15 8 H 0.11 5.64 5.90 -2.91 -0.02 5.62 15 9 C 0.04 1.74 5.13 -21.27 -0.11 1.63 15 10 C -0.20 -7.00 7.24 22.61 0.16 -6.83 15 11 C 0.00 -0.09 9.45 22.00 0.21 0.12 15 12 C -0.76 -25.19 5.97 22.54 0.13 -25.05 15 13 S 2.74 75.72 6.28 -56.49 -0.35 75.36 15 14 N -1.23 -21.53 9.55 37.02 0.35 -21.18 15 15 O -1.01 -35.30 17.26 -128.00 -2.21 -37.51 15 16 O -0.99 -30.48 17.26 -128.00 -2.21 -32.69 15 17 C 0.09 3.67 8.99 22.00 0.20 3.87 15 18 C -0.11 -5.47 6.90 36.72 0.25 -5.21 15 19 N 0.03 1.70 4.98 -45.66 -0.23 1.47 15 20 O -0.36 -20.20 19.15 3.52 0.07 -20.13 15 21 O -0.31 -17.76 16.23 3.51 0.06 -17.70 15 22 H 0.33 10.66 8.27 -92.71 -0.77 9.90 15 23 H 0.15 4.50 4.81 -2.91 -0.01 4.49 15 24 H 0.17 4.02 7.59 -2.91 -0.02 3.99 15 25 H 0.43 5.90 8.92 -96.74 -0.86 5.03 15 26 H 0.43 5.32 8.96 -96.74 -0.87 4.45 15 27 H 0.14 5.82 7.10 -2.91 -0.02 5.79 15 Total: -1.00 -68.84 259.29 -1.47 -70.31 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.51 Total: 20.60 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 1.55 Total: -42.27 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.45 Total: -47.07 kcal Atomic # 8 Polarization: -103.73 SS G_CDS: -4.29 Total: -108.03 kcal Atomic # 14 Polarization: 29.41 SS G_CDS: 1.69 Total: 31.11 kcal Atomic # 16 Polarization: 75.72 SS G_CDS: -0.35 Total: 75.36 kcal Total: -68.84 -1.47 -70.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046433.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.695 kcal (2) G-P(sol) polarization free energy of solvation -68.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds