Wall clock time and date at job start Mon Mar 30 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99807 * 2 1 4 4 C 1.52998 * 109.46775 * 174.87943 * 3 2 1 5 5 N 1.46898 * 109.46982 * 70.99190 * 4 3 2 6 6 C 1.46898 * 110.99913 * 292.38521 * 5 4 3 7 7 C 1.50703 * 109.47310 * 297.67140 * 6 5 4 8 8 H 1.08007 * 119.99776 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00394 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00205 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99953 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47209 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47112 * 120.00005 * 11 9 7 14 14 H 1.48505 * 109.46703 * 239.99856 * 11 9 7 15 15 C 1.46901 * 111.00589 * 56.33827 * 5 4 3 16 16 H 1.08999 * 109.47003 * 292.40881 * 15 5 4 17 17 C 1.53004 * 109.46751 * 52.40421 * 15 5 4 18 18 C 1.52999 * 109.46724 * 180.02562 * 17 15 5 19 19 C 1.52996 * 109.47792 * 300.00182 * 18 17 15 20 20 C 1.53003 * 109.46936 * 59.99733 * 19 18 17 21 21 H 1.09001 * 109.47411 * 180.02562 * 20 19 18 22 22 O 1.42905 * 109.46980 * 60.00564 * 20 19 18 23 23 C 1.42897 * 114.00258 * 89.99593 * 22 20 19 24 24 C 1.52994 * 109.47378 * 172.40861 * 15 5 4 25 25 H 1.08999 * 109.47495 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47686 * 299.99864 * 1 2 3 27 27 H 1.09001 * 109.47499 * 59.99637 * 1 2 3 28 28 H 1.09000 * 109.47212 * 294.88162 * 3 2 1 29 29 H 1.09000 * 109.46932 * 54.88218 * 3 2 1 30 30 H 1.09006 * 109.46893 * 190.98149 * 4 3 2 31 31 H 1.08997 * 109.47467 * 310.98882 * 4 3 2 32 32 H 1.09004 * 109.47391 * 57.66790 * 6 5 4 33 33 H 1.09001 * 109.47345 * 177.67224 * 6 5 4 34 34 H 0.96998 * 120.00428 * 180.02562 * 10 9 7 35 35 H 1.08992 * 109.47193 * 300.00244 * 17 15 5 36 36 H 1.08999 * 109.46991 * 60.00454 * 17 15 5 37 37 H 1.08999 * 109.47109 * 60.00411 * 18 17 15 38 38 H 1.09006 * 109.46940 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.47626 * 179.97438 * 19 18 17 40 40 H 1.08999 * 109.46981 * 300.00308 * 19 18 17 41 41 H 1.09005 * 109.47296 * 300.00555 * 23 22 20 42 42 H 1.09000 * 109.46582 * 60.00060 * 23 22 20 43 43 H 1.09000 * 109.47263 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.47071 * 299.99979 * 24 15 5 45 45 H 1.08997 * 109.47131 * 60.00052 * 24 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5301 1.1869 0.1287 5 7 4.0871 0.6520 -1.1209 6 6 3.6766 -0.7435 -1.3253 7 6 4.2183 -1.5956 -0.2066 8 1 4.8090 -1.1455 0.5777 9 6 3.9600 -2.9497 -0.1842 10 7 3.2404 -3.4978 -1.1388 11 14 4.6310 -4.0057 1.2030 12 1 5.4026 -3.1548 2.1442 13 1 3.5040 -4.6480 1.9258 14 1 5.5205 -5.0539 0.6413 15 6 3.7046 1.4867 -2.2677 16 1 2.6306 1.4047 -2.4345 17 6 4.0661 2.9453 -1.9799 18 6 3.6671 3.8146 -3.1740 19 6 4.4142 3.3407 -4.4223 20 6 4.0527 1.8821 -4.7099 21 1 4.5853 1.5443 -5.5990 22 8 2.6445 1.7745 -4.9281 23 6 2.2536 1.9373 -6.2929 24 6 4.4521 1.0125 -3.5155 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.7629 1.8132 -0.9323 29 1 1.6178 1.8778 0.8406 30 1 3.9560 2.1711 0.3243 31 1 3.7738 0.5154 0.9520 32 1 2.5883 -0.8046 -1.3342 33 1 4.0683 -1.1018 -2.2773 34 1 3.0584 -4.4504 -1.1229 35 1 3.5335 3.2830 -1.0910 36 1 5.1401 3.0272 -1.8131 37 1 2.5930 3.7325 -3.3404 38 1 3.9251 4.8537 -2.9693 39 1 4.1296 3.9597 -5.2730 40 1 5.4883 3.4228 -4.2559 41 1 2.5590 2.9234 -6.6431 42 1 2.7330 1.1710 -6.9020 43 1 1.1708 1.8423 -6.3745 44 1 5.5262 1.0945 -3.3487 45 1 4.1946 -0.0266 -3.7204 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070329066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:27 Heat of formation + Delta-G solvation = -87.567590 kcal Electronic energy + Delta-G solvation = -23140.232163 eV Core-core repulsion = 19965.108310 eV Total energy + Delta-G solvation = -3175.123852 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.49896 -37.80053 -36.22122 -34.40835 -32.28885 -30.49584 -29.24100 -28.41058 -26.35163 -26.10158 -25.15974 -22.92742 -22.20485 -21.50014 -19.87623 -18.70302 -16.53268 -16.03384 -15.87380 -15.58942 -15.40643 -15.08889 -14.52680 -14.32245 -14.18833 -13.71957 -13.48821 -13.16522 -12.59392 -12.34312 -12.11086 -11.95653 -11.74310 -11.61186 -11.35130 -11.14667 -11.08422 -10.97380 -10.78228 -10.64297 -10.58385 -10.36328 -10.15727 -9.88582 -9.73563 -9.56703 -9.11117 -8.87546 -8.81859 -8.16159 -6.90133 -5.78187 -3.74657 3.43331 3.50127 3.54735 3.99882 4.51001 4.61650 4.89302 4.97669 5.02932 5.29904 5.34513 5.41612 5.53468 5.58467 5.65852 5.67204 5.70763 5.72303 5.77056 5.80522 5.88082 5.91674 5.93052 6.03114 6.08941 6.16843 6.18718 6.26889 6.30858 6.44279 6.49637 6.58419 6.78532 6.85678 6.98740 7.43444 7.56074 7.88145 7.99755 8.03663 8.34141 8.49422 8.83979 9.30829 9.85379 11.33368 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018591 B = 0.006030 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.704720 B = 4642.646837 C = 4966.027085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.024 3.976 4 C 0.062 3.938 5 N -0.532 5.532 6 C 0.182 3.818 7 C -0.486 4.486 8 H 0.056 0.944 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.888 3.112 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.288 1.288 15 C 0.089 3.911 16 H 0.043 0.957 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.138 4.138 20 C 0.090 3.910 21 H 0.056 0.944 22 O -0.376 6.376 23 C 0.031 3.969 24 C -0.107 4.107 25 H 0.080 0.920 26 H 0.027 0.973 27 H 0.029 0.971 28 H 0.043 0.957 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.024 0.976 34 H 0.255 0.745 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.038 0.962 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 14.204 -6.085 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.261 6.261 3 C -0.055 4.055 4 C -0.067 4.067 5 N -0.255 5.255 6 C 0.058 3.942 7 C -0.525 4.525 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.540 5.540 11 Si 0.717 3.283 12 H -0.200 1.200 13 H -0.214 1.214 14 H -0.215 1.215 15 C -0.020 4.020 16 H 0.060 0.940 17 C -0.153 4.153 18 C -0.148 4.148 19 C -0.176 4.176 20 C 0.032 3.968 21 H 0.074 0.926 22 O -0.294 6.294 23 C -0.066 4.066 24 C -0.144 4.144 25 H 0.099 0.901 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.526 13.820 -5.948 15.123 hybrid contribution -0.712 -0.404 0.345 0.889 sum -2.239 13.415 -5.603 14.710 Atomic orbital electron populations 1.22664 0.83845 1.02115 0.98244 1.88465 1.17213 1.25851 1.94595 1.23377 0.97512 0.85880 0.98731 1.22217 0.88691 0.99777 0.95998 1.62369 1.58419 1.04966 0.99736 1.20017 0.96479 0.80966 0.96768 1.21123 1.30913 0.92116 1.08381 0.92557 1.24868 0.95705 0.97932 0.95903 1.69976 1.39830 1.11187 1.32992 0.86600 0.78491 0.80514 0.82660 1.19961 1.21445 1.21454 1.21399 0.97450 0.91755 0.91372 0.93959 1.21693 1.01519 0.95043 0.97045 1.21392 1.00645 0.98147 0.94648 1.22007 1.00663 0.96612 0.98289 1.22217 0.81640 0.94818 0.98137 0.92603 1.88003 1.23296 1.92968 1.25171 1.22726 1.00773 0.99121 0.83951 1.21699 1.00475 0.99660 0.92597 0.90117 0.95441 0.95285 0.93913 0.94996 0.91420 0.89069 0.95167 0.95855 0.93546 0.92327 0.91624 0.91748 0.92736 0.92635 0.91147 0.94692 0.94324 0.90122 0.90385 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.34 -7.59 7.72 -35.23 -0.27 -7.86 16 3 C 0.02 0.44 5.45 37.16 0.20 0.65 16 4 C 0.06 1.22 5.12 -3.83 -0.02 1.21 16 5 N -0.53 -11.54 4.60 -228.08 -1.05 -12.59 16 6 C 0.18 4.82 4.09 -4.98 -0.02 4.80 16 7 C -0.49 -13.97 8.38 -34.44 -0.29 -14.26 16 8 H 0.06 1.61 6.89 -52.48 -0.36 1.25 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 11 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 C 0.09 1.64 1.15 -67.71 -0.08 1.56 16 16 H 0.04 0.88 5.99 -51.93 -0.31 0.57 16 17 C -0.12 -1.72 4.59 -26.73 -0.12 -1.84 16 18 C -0.11 -1.42 5.78 -26.73 -0.15 -1.57 16 19 C -0.14 -1.68 5.63 -26.73 -0.15 -1.84 16 20 C 0.09 1.29 2.92 -26.70 -0.08 1.22 16 21 H 0.06 0.72 7.79 -51.93 -0.40 0.32 16 22 O -0.38 -5.83 9.00 -35.23 -0.32 -6.15 16 23 C 0.03 0.36 10.82 101.05 1.09 1.45 16 24 C -0.11 -1.88 4.83 -26.71 -0.13 -2.01 16 25 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.79 5.67 -51.93 -0.29 0.49 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 31 H 0.09 2.02 6.42 -51.93 -0.33 1.69 16 32 H 0.03 0.88 5.31 -51.93 -0.28 0.61 16 33 H 0.02 0.67 6.11 -51.93 -0.32 0.36 16 34 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.06 0.85 5.99 -51.93 -0.31 0.54 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.60 7.87 -51.93 -0.41 0.19 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.34 7.87 -51.93 -0.41 -0.07 16 42 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.08 1.58 6.36 -51.93 -0.33 1.25 16 LS Contribution 336.74 15.07 5.07 5.07 Total: -1.00 -31.89 336.74 -7.43 -39.31 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.85 Total: -0.97 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 1.27 Total: -7.48 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -0.31 Total: -39.38 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.59 Total: -14.01 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.89 -7.43 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070329066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.255 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds